KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:39:47 2014 Check: 00 ..
Name: ENSTTRP00000007658/1-418 Len: 421 Check: 6379 Weight: 1.00
Name: ENSP00000281317/1-418 Len: 421 Check: 8121 Weight: 1.00
Name: ENSBTAP00000029802/1-421 Len: 421 Check: 1244 Weight: 1.00
Name: bmy_03473T0/1-419 Len: 421 Check: 9078 Weight: 1.00
Name: BACU013554/1-419 Len: 421 Check: 8807 Weight: 1.00
//
1 50
ENSTTRP00000007658/1-418 --IPMLLQHP HRDFLKVLLR TLYRRYHFIL PSSTHLRSGL PCAQPFSYLG
ENSP00000281317/1-418 --MPMLLPHP HQHFLKGLLR APFRCYHFIF HSSTHLGSGI PCAQPFNSLG
ENSBTAP00000029802/1-421 MNIPMLLQRP HQHFLKGLVR TPFRCYRFIF HPSPHLGSGV PCAQLLSSPG
bmy_03473T0/1-419 MNIPMLLQHP HRDLLKVLLR TLFRRYHFIV PSSTHLRSGI PCAQPFSSLG
BACU013554/1-419 MNIPMLLQHP HRDFLKVLLR TLFRRYHFIV PSSTHLRLGI PCAQPFSALG
51 100
ENSTTRP00000007658/1-418 LHHAKWMLPS NGLTRKLCLQ TTLKEQTEGL SDKEQRLVDE LYTGLIQGQR
ENSP00000281317/1-418 LHCTKWMLLS DGLKRKLCVQ TTLKDHTEGL SDKEQRFVDK LYTGLIQGQR
ENSBTAP00000029802/1-421 LHCAKWMLPS NGLTRKLCLQ TTLEEHTEGL SDKEQRLVDK LYAGLIQGQR
bmy_03473T0/1-419 LHHAKWMLPS NGLTRTLCLQ TTLKEQTEGL SDKEQKLVAE LYTGLIQGQR
BACU013554/1-419 LHHAKWMLPS NGLTRTLCLH TTLKEQTEGL SDKEQKLVAE LYTGLIQGQR
101 150
ENSTTRP00000007658/1-418 ACLAEAITLI ESTHNRKKEL AQVLLQKVLV RHREQEKLNK GKPLAFRVGL
ENSP00000281317/1-418 ACLAEAITLV ESTHSRKKEL AQVLLQKVLL YHREQEQSNK GKPLAFRVGL
ENSBTAP00000029802/1-421 ACLAEAITLV ESTHSRKKEL AQVLLQKVLA HHREQENLNK GKPLAFRVGL
bmy_03473T0/1-419 ACLAEAITLI ESTHNRKKEL AQVLLQKVLV HHREQEKL-K GKPLAFRVGL
BACU013554/1-419 ACLAEAITLI ESTHNRKKEL AQVLLQKVLV HHREQEKL-K GKPLAFRVGL
151 200
ENSTTRP00000007658/1-418 SGPPGAGKST FIEYFGKMLT ERGHKLSVLA VDPSSCTSGX XXXXXXXXXX
ENSP00000281317/1-418 SGPPGAGKST FIEYFGKMLT ERGHKLSVLA VDPSSCTSGG SLLGDKTRMT
ENSBTAP00000029802/1-421 SGPPGAGKST FIEYFGKMLT ERGHKLSVLA VDPSSCTSGG SLLGDKTRMT
bmy_03473T0/1-419 SGPPGAGKST FIEYFGKMLT ERGHKLSVLA VDPSSCTSGG SLLGDKTRMT
BACU013554/1-419 SGPPGAGKST FIEYFGKMLT ERGHKLSVLA VDPSSCTSGG SLLGDKTRMT
201 250
ENSTTRP00000007658/1-418 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXVGP
ENSP00000281317/1-418 ELSRDMNAYI RPSPTRGTLG GVTRTTNEAI LLCEGAGYDI ILIETVGVGQ
ENSBTAP00000029802/1-421 ELSRDMNAYI RPSPTRGTLG GVTRTTNEAI LLCEGGGYDV ILVETVGVGQ
bmy_03473T0/1-419 ELSRDMNAYI RPSPTRGTLG GVTRTTNEAI LLCEGGGYDI ILIETVGVGQ
BACU013554/1-419 ELSRDMNAYI RPSPTRGTLG GVTRTTNEAI LLCEGAGYDI ILIETVGVGQ
251 300
ENSTTRP00000007658/1-418 SEFAVANSVD WSVXXXXXXX XXXXXGIKRG IIEMADLVAI TKSDGDLVVP
ENSP00000281317/1-418 SEFAVADMVD MFVLLLPPAG GDELQGIKRG IIEMADLVAV TKSDGDLIVP
ENSBTAP00000029802/1-421 SEFAVADMVD MFILLLPPAG GDELQGIKRG IVEMADLVAI TKSDGDLIVP
bmy_03473T0/1-419 SEFAVADMVD MFVLLLPPAG GDELQGIKRG IIEMADLVAI TKSDGDLVVP
BACU013554/1-419 SEFAVADMVD MFVLLLPPAG GDELQGIKRG IIEMADLVAI TKSDGDLVVP
301 350
ENSTTRP00000007658/1-418 ARRIQAEYVS ALKLLRRRSG VWRPKVIRIS ARSGEGITEM WDTMKEFQDV
ENSP00000281317/1-418 ARRIQAEYVS ALKLLRKRSQ VWKPKVIRIS ARSGEGISEM WDKMKDFQDL
ENSBTAP00000029802/1-421 ARRIQAEYVS ALKLLRRRSG VWRPKVIRIS ARSGEGITEM WDKMKEFQEV
bmy_03473T0/1-419 ARRIQAEYVS ALKLLRRRSG VWRPKVIRIS ARSGEGIAEM WDRMKEFQDV
BACU013554/1-419 ARRIQAEYVS ALKLLRRRSG VWRPKVIRIS ARSGEGITEM WDTMKEFQDV
351 400
ENSTTRP00000007658/1-418 MLASGELTAK RQKQQKVWMW NLIRENVVEH FRTHPTVREQ IPLLEKRVLS
ENSP00000281317/1-418 MLASGELTAK RRKQQKVWMW NLIQESVLEH FRTHPTVREQ IPLLEQKVLI
ENSBTAP00000029802/1-421 MLVSGELAAK RQKQQKVWMW NLIQENVIEH FRTHPAVREQ IPLLEKRVLS
bmy_03473T0/1-419 MLASGELTAK RQKQQRVWMW NLIQENVVEH FRTHPTVRKR IPLLEESVLS
BACU013554/1-419 MLASGELTAK RQKQQRVWMW NLIQENVVEH FRTHPTVRKR IPLLEESVLS
401 450
ENSTTRP00000007658/1-418 GALSPGLAAD LLLKAFKSRD -
ENSP00000281317/1-418 GALSPGLAAD FLLKAFKSRD -
ENSBTAP00000029802/1-421 GALSPGLAAD LLLKAFKSRH E
bmy_03473T0/1-419 GALSPGLAAD LLLKAFKSRD -
BACU013554/1-419 GALSPGLAAD LLLKAFKSRD -