KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:48 2014 Check: 00 .. Name: ENSP00000306099/1-491 Len: 505 Check: 4634 Weight: 1.00 Name: ENSBTAP00000029826/1-495 Len: 505 Check: 7958 Weight: 1.00 Name: ENSTTRP00000009538/1-490 Len: 505 Check: 4911 Weight: 1.00 Name: bmy_22468T0/1-436 Len: 505 Check: 64 Weight: 1.00 Name: BACU006562/1-490 Len: 505 Check: 3002 Weight: 1.00 // 1 50 ENSP00000306099/1-491 MKRMVSWSFH KLKTMKHLLL LLLCVFLVKS QGVNDNEEGF -------FSA ENSBTAP00000029826/1-495 ---MISCNFE KFKTMKHLLL LLFCAFIVQA QFPTDYDEGQ DDRPKVGLGA ENSTTRP00000009538/1-490 -QRMVSWNFQ KFKTMKHLLL LLLCVFIIKG QAIDDYDEFH -------LDA bmy_22468T0/1-436 ---------- ---------- ---------- ---------- ---------- BACU006562/1-490 -QRMVSWNFQ KFKTMKHLLL LLLCVFIVKA QAIDDYDELH -------LDA 51 100 ENSP00000306099/1-491 RGHRPLDKKR EEAPSLRPAP PPISGGGYRA RPAKAAATQK KVERKAPDAG ENSBTAP00000029826/1-495 RGHRPYDKKK EEAPSLRPVP PPISGGGYRA RPATATVGQK KVERKPPDAD ENSTTRP00000009538/1-490 RGHRPYDKKR EEPPSLRPVP PPISGDGYKA RPAKTANRQK KVERKPPDAD bmy_22468T0/1-436 ---------- ---------M SELIGDGYQP RPAKAAIRQK KVERKPPDSD BACU006562/1-490 RGHRPYDKKR EEAPSLRPVP PPISGDGYQP RPAKAAIRQK KVERKPPDAD 101 150 ENSP00000306099/1-491 GCLHADPDLG VLCPTGCQLQ EALLQQERPI RNSVDELNNN VEAVSQTSSS ENSBTAP00000029826/1-495 GCLHADPDLG VLCPTGCKLQ DTLVRQERPI RKSIEDLRNT VDSVSRTSSS ENSTTRP00000009538/1-490 GCLHADPDLG VLCPTGCQLQ DTLVKEERLT RKNVEELMTN IESVSQTASS bmy_22468T0/1-436 GCLHADPDLG VLCPTGCQLQ DTLVKEERPI RKNVEELITN IESVSQTSSS BACU006562/1-490 GCLHADPDLG VLCPTGCQLQ DTLVKEERPI RKNVEELITN IESVSQTSSS 151 200 ENSP00000306099/1-491 SFQYMYLLKD LWQKRQKQVK DNENVVNEYS SELEKHQLYI DETVNSNIPT ENSBTAP00000029826/1-495 TFQYITLLKN MWKGRQNQVQ DNENVVNEYS SHLEKHQLYI DETVKNNIPT ENSTTRP00000009538/1-490 TFQYITVLRN IWKERQKQVK DNENVINEYS SQLEKHQLYI DETVNSNIPT bmy_22468T0/1-436 TFQYITLLKN MWKERQKQVK DNENVINEYS SQLEKHQLYI DETVNSNIPT BACU006562/1-490 TFQYITLLKN MWKERQKQVK DNENVINEYS SQLEKHQLYI DETVNSNIPT 201 250 ENSP00000306099/1-491 NLRVLRSILE NLRSKIQKLE SDVSAQMEYC RTPCTVSCNI PVVSGKECEE ENSBTAP00000029826/1-495 KLRVLRSILE NLRSKIQKLE SDVSTQMEYC RTPCTVTCNI PVVSGKECEE ENSTTRP00000009538/1-490 KLRVLRSILE NLRSKIQNLE SDVSTQMEYC RSPCTVTCNI PVVSGRECEE bmy_22468T0/1-436 KLRVLRSILE NLRSKIQKLE SDVSAQMEYC RSPCTVTCNI PVVSGRECEE BACU006562/1-490 KLRVLRSILE NLRSKIQKLE SDVSAQMEYC RSPCTVTCNI PVVSGRECEE 251 300 ENSP00000306099/1-491 IIRKGGETSE MYLIQPDSSV KPYRVYCDMN TENGGWTVIQ NRQDGSVDFG ENSBTAP00000029826/1-495 IIRNGGETSE MYLIQPEDSS KPYRVYCDMK TEKGGWTVIQ NRQDGSVDFG ENSTTRP00000009538/1-490 IIRNGGETSE MYLIQPDSST KPYRVYCDMK TERGGWTVIQ NRQDGSVDFG bmy_22468T0/1-436 IIRNGGETSE MYLIQPDSSI KPYRVYCDMK TERGGWTVIQ NRQDGSVDFG BACU006562/1-490 IIRNGGETSE MYLIQPDSSI KPYRVYCDMK TERGGWTVIQ NRQDGSVDFG 301 350 ENSP00000306099/1-491 RKWDPYKQGF GNVATNTDGK NYCGLPGEYW LGNDKISQLT RMGPTELLIE ENSBTAP00000029826/1-495 RKWDPYKQGF GNIATNAEGK KYCGVPGEYW LGNDRISQLT NMGPTKLLIE ENSTTRP00000009538/1-490 RKWDPYKEGF GNIATNADGK KYCGVPGEYW LGNDKISQLT RLGPTKLFIE bmy_22468T0/1-436 RKWDPYKEGF GNIATNADGR KYCGVPGEYW LGNDKISQLT RLGPTKLFIE BACU006562/1-490 RKWDPYKEGF GNIATNADGK KYCGVPGEYW LGNDKISQLT RLGPTKLFIE 351 400 ENSP00000306099/1-491 MEDWKGDKVK AHYGGFTVQN EANKYQISVN KYRGTAGNAL MDGASQLMGE ENSBTAP00000029826/1-495 MEDWKGDKVT ALYEGFTVQN EANKYQLSVS KYKGTAGNAL IEGASQLVGE ENSTTRP00000009538/1-490 MEDWKGDKVT ALYEGFTVQN EANKYQLSVS NYKGTAGNAL IEGASQLVGE bmy_22468T0/1-436 MEDWKGDKVT ALYEGFTVQN EANKYQLSVS KYKGTAGNAL IEGASQLVGE BACU006562/1-490 MENWKGDKVT ALYEGFTVQS EANKYQLSVS KYKGTAGNAL IEGASQLVGE 401 450 ENSP00000306099/1-491 NRTMTIHNGM FFSTYDRDND GW-------L TSDPRKQCSK EDGGGWWYNR ENSBTAP00000029826/1-495 NRTMTIHNSM FFSTYDRDND GW-------K TTDPRKQCSK EDGGGWWYNR ENSTTRP00000009538/1-490 NRTMTIHNSM FFSTYDRDND GW-------K TTDPRKQCSK EDGGGWWYNR bmy_22468T0/1-436 NRTMTIHNSM FFSTYDRDND GWAEKTFAVK TTDPRKQCSK EDGGGWWYNR BACU006562/1-490 NRTMTIHNSM FFSTYDRDND GW-------K TTDPKKQCSK EDGGGWWYNR 451 500 ENSP00000306099/1-491 CHAANPNGRY YWGGQYTWDM AKHGTDDGVV WMNWKGSWYS MRKMSMKIRP ENSBTAP00000029826/1-495 CHAANPNGRY YWGGAYTWDM AKHGTDDGVV WMNWQGSWYS MKKMSMKIRP ENSTTRP00000009538/1-490 CHAANPNGRY YWGGPYTWDM AKHGTDDGVV WMNWQGSWYS MKKMSMKIRP bmy_22468T0/1-436 CHAANPNGRY YWGGPYTWDM AKHGTDDGVV WMNWQGSWYS MKKMSMKIRP BACU006562/1-490 CHAANPNGRY YWGGPYTWDM AKHGTDDGVV WMNWQGSWYS MKKMSMKIRP 501 550 ENSP00000306099/1-491 FFPQQ ENSBTAP00000029826/1-495 YFPEQ ENSTTRP00000009538/1-490 YFPEH bmy_22468T0/1-436 YFPEQ BACU006562/1-490 YFPEQ