KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:49 2014 Check: 00 .. Name: ENSP00000387185/1-737 Len: 1088 Check: 9089 Weight: 1.00 Name: ENSBTAP00000029859/1-691 Len: 1088 Check: 7457 Weight: 1.00 Name: BACU003643/1-1044 Len: 1088 Check: 2849 Weight: 1.00 Name: bmy_04964T0/1-774 Len: 1088 Check: 6792 Weight: 1.00 Name: ENSTTRP00000012848/1-400 Len: 1088 Check: 3548 Weight: 1.00 // 1 50 ENSP00000387185/1-737 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029859/1-691 ---------- ---------- ---------- ---------- ---------- BACU003643/1-1044 MRRCSRCASP CAGSCARSAL AAPGPDLSRT SKTTTSVYLL FIGSVLSSAP bmy_04964T0/1-774 ---------- ---------- ---------- ---------- -------MVG ENSTTRP00000012848/1-400 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000387185/1-737 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029859/1-691 ---------- ---------- ---------- ---------- ---------- BACU003643/1-1044 AADPPRLQEE LRKLCRLACE GVLGGRGQGA VLREGPGTTG ALRLQSPDAV bmy_04964T0/1-774 ASDSPF---- ---------- ---------- ---------- ---------- ENSTTRP00000012848/1-400 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000387185/1-737 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029859/1-691 ---------- ---------- ---------- ---------- ---------- BACU003643/1-1044 SPQEGDVPGV LETEVTHRFI DQTFQEFLAA LSYLLAARGH FRAVLPAGGA bmy_04964T0/1-774 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012848/1-400 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000387185/1-737 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029859/1-691 ---------- ---------- ---------- ---------- ---------- BACU003643/1-1044 GALLRGAPEL RGRLALTTRF LFGPLNAERM RDVEHHFGCA VSERGKQDVP bmy_04964T0/1-774 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012848/1-400 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000387185/1-737 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029859/1-691 ---------- ---------- ---------- ---------- ---------- BACU003643/1-1044 RWVQDQCQGC PRAAPEGTEG TQALRGAGES EEEEGEELND LLELLHCLSE bmy_04964T0/1-774 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012848/1-400 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000387185/1-737 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029859/1-691 ---------- ---------- ---------- ---------- ---------- BACU003643/1-1044 TQEDALVHQA LRGLPELALE RVHFSRTDLA VLSYCARCCP AGQAVQLVSC bmy_04964T0/1-774 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012848/1-400 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000387185/1-737 ---------- ---------- ---------- ---MEDAGED PTTFAAHSLP ENSBTAP00000029859/1-691 ---------- ---------- ---------- ---MEDAGED ATRFTARSLP BACU003643/1-1044 RLATAQEKKK KSLMKRLQGR LGGSSPLRRA NLPMEDAGKD ATRFTARSLP bmy_04964T0/1-774 ---------- ---------- ---CRPLRRA NLSMEDAGKD ATRFTAHSLP ENSTTRP00000012848/1-400 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000387185/1-737 SDPRLLATVT NAYLGTRVFH DTLHVSGVYN GAGGDTHRAM LPSPLNVRLE ENSBTAP00000029859/1-691 SDPRLLATVT NAYLGTRVYH ETLHVSGVYN GALGDTHRAI LPSPLNVQLE BACU003643/1-1044 GDPRLLATVT NAYLGTRVYH ETLHVSGVYN GARGDTHRAI LPSPLNVQLE bmy_04964T0/1-774 SDPRLLATVT NAYLGTRVYH EXLHVSGVYN GAWGDTHRAV LPSPLNVQLE ENSTTRP00000012848/1-400 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000387185/1-737 APAGMGEQLT ETFALDTNTG SFLHTLEGPR FRASQCIYAH RTLPHVLAFR ENSBTAP00000029859/1-691 APAGTGEQLT KTYVLDTNTG SFVHTLEGPS FRASQRIYAH RTLPHVLAFS BACU003643/1-1044 APAGSGEQLT NTFVLDTNTG SFLQTLEGPS FRASQRIYAH RTLPHVLACS bmy_04964T0/1-774 APAGSGEQLT KTFVLDTSTG SFLHTLEGPS FRASQRIYAH RTLPHVLAFS ENSTTRP00000012848/1-400 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000387185/1-737 VSIARLAPGS GPITLLLRSA FSPESPDLDL HQGPDFQGAR YLYGHTLTPE ENSBTAP00000029859/1-691 VSITRLAKGS WPVTVRLQSA FSPESPDLDL HLGPDFQGAR YLCGRTLTPE BACU003643/1-1044 VSITRLATGS WPITVLLQSA FSPESPDLDL HLGPDFQGAR YLYGRTLTPE bmy_04964T0/1-774 VSITRLATGS WPITVLLQSA FSPESPDLDL HLGPDFQGAR YLYGHTLTPE ENSTTRP00000012848/1-400 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000387185/1-737 QPGGPQQEVH MLWTPAPPDL TLGEGEEART WDFLTAVGGS QAEAQACLTE ENSBTAP00000029859/1-691 QPGGAQQEVH MLWTPVPLAL TLGEGQEDAT WEFLTVVGGS QAEAQACLAE BACU003643/1-1044 QPGGAQQEVH MLWTPVPPAL TLGEGEEDGT WEFLTVVGGS QAEAQACLAD bmy_04964T0/1-774 RPGGAQQEVH MLWTPVPPAL TLGEGEEDGT WEFLTVVGGS QAEAQACLAD ENSTTRP00000012848/1-400 ---------- MLWTPVPPAL TLGEGEEDGT WEFLTVVGGS QAEAQACLAD 551 600 ENSP00000387185/1-737 ALQLQARGAL YTAHAQAWAQ LWVECGLDVV GPLQLRQALR GSLYYLLSAL ENSBTAP00000029859/1-691 ALQLQARHAL YTAHAQAWAQ LWADCGLDVE GPLALRQALR GALYYLLSAL BACU003643/1-1044 ALQLQARRTL YAAHSQAWAQ LWAGCGLDEE GPLRLRQALR GALYYLLSAL bmy_04964T0/1-774 ALQLQARHAL YAAHAQAWAQ LWAGCGLDVE GPLRLRQALR GALYYLLSAL ENSTTRP00000012848/1-400 ALQLQARRTL YMAHAQAWAQ LWAGCGLDVE GPLRLRQALR GALYYLLSAL 601 650 ENSP00000387185/1-737 PQPKAPGYIC HGLSPGGLSN GSREECYWGH VFWDQDLWMF PSILMFHPEA ENSBTAP00000029859/1-691 PQPGASGYVC HGLSPGGLSN GSRGECYWGH VFWDQDLWVL PGLLLLHPEA BACU003643/1-1044 PQPGAPEYVC HGLSPGGLSN GSREECYWGH VFWDQDLWMF PSVLMLHPEA bmy_04964T0/1-774 PQPGATEYVC HGLSPGGLSN GSREECYWGH VFWDQDLWMF PSILMLHPEA ENSTTRP00000012848/1-400 PQPGAPGYVC HGLSPGGLSN GSREECYWGH VFWDQDLWMF PSILMFHPEA 651 700 ENSP00000387185/1-737 ARAILEYRIR TLDGALENAQ NLGYQGAKFA WESADSGLEV CPEDIYGVQE ENSBTAP00000029859/1-691 AKALLQYRIR TLSGALDNAR SLGYQGAKFA WESAGSGLEV CPEAIYGTQE BACU003643/1-1044 AKALLQYRIR TLSGALYNAQ NLGYQGAKFA WESAGSGLEV CPEAIYGTQE bmy_04964T0/1-774 ARALLQYRIR TLSGALYNAQ NLGYQGAKFA WESAGSGLEV CPEAIYGTQE ENSTTRP00000012848/1-400 ARALLQYRIR TLGGALYNAQ NLGYQGAKFA WESAGSGLEV CPEAIYGTQE 701 750 ENSP00000387185/1-737 VHVNGAVVLA FELYYHTTQD LQLFREAGGW DVVRAVAEFW CSRVEWSPRE ENSBTAP00000029859/1-691 IHVNGAVVLA FQLYYHTTQD LELFREAGGW DVVRAVAEFW CSRVEWNPEE BACU003643/1-1044 IHINGAVVLA FRLYYHATQ- ------AGGW DVVRAVAEFW CSRVEWSPEE bmy_04964T0/1-774 IHINGAVVLA FRLYYHTTQD LQLFREAGGW DVVSAVAEFW CSRVEWSPEE ENSTTRP00000012848/1-400 IHINGAVVLA FQLYYHTTQD LQLFREAGGW EVVSAVAEFW CSRVEWSPGE 751 800 ENSP00000387185/1-737 EKYHLRGVMS PDEYHSGVNN SVYTNVLVQN SLRFAAALAQ DLGLPIPSQW ENSBTAP00000029859/1-691 EKYHLKGVMP PDEYHPGVNN SVYTNVLVQN SLRFAAALAQ DLGHPVPNQW BACU003643/1-1044 EKFHLKGVMP PDEYHSGVNN SVYTNVLVQN SLRFAAALAQ DLGQPVPNQW bmy_04964T0/1-774 EKFHLKGVMP PDEYHSGVNN SVYTNVLVQN SLRFAAALAQ DLGQPVPNQW ENSTTRP00000012848/1-400 EKFHLKGVMP PDEYHSGVDN SVYTNVLVQN SLRFAAALAQ DLGQPVPNQW 801 850 ENSP00000387185/1-737 LAVADKIKVP FDVEQNFHPE FDGYEPGEVV KQADVVLLGY PVPFSLSPDV ENSBTAP00000029859/1-691 LVVADKIKVP FDPKLNFHPE FDGYRPGEEV KQADVVLLGY PVPFPLSPHV BACU003643/1-1044 LVVADKIKVP FDPKLNFHPE FDGYQPGEEV KQADVVLLGY PVPFPLSPQV bmy_04964T0/1-774 LVVADKIKVP FDPKLNFHPE FDGYQPGEAV KQADVVLLGY PVPFPLSPQV ENSTTRP00000012848/1-400 LVVADKIKVP FDPKLNFHPE FDGYQPGEEV KQADVVLLGY PVPFPLSPQV 851 900 ENSP00000387185/1-737 RRKNLEIYEA VTSPQGPAMT WSMFAVGWME LKDAVRARGL LDRSFANMAE ENSBTAP00000029859/1-691 RRQNLEIYEA VTSPHGPAMT WSMFAVGWME LKDPGRAWAL LERSFANVTE BACU003643/1-1044 RRQNLEMYEA VTSPQGPAMT WSMFAVGWME LKDPGRAWDL LERSFANVTE bmy_04964T0/1-774 RRQNLEMYEA VTSPQGPAMT WSMFAVGWME LKDPGRAWDL LERSFANVTE ENSTTRP00000012848/1-400 RRQNLEMYEA VTSPQGPAMT WSMFAVGWME LKDPGRAWGL LQRSFANVTE 901 950 ENSP00000387185/1-737 PFKVWTENAD GSGAVNFLTG MGGFLQAVVF GCTGFRVTRA GVTFDPVCLS ENSBTAP00000029859/1-691 PFKVWTENAD GSGAVNFLTG MGGFLQAVLF GVTGFRITRA GLTFNPMCPV BACU003643/1-1044 PFKVWTENAD RSGAVNFLTG MGGFLQAVLF GVTGFRITEA GLTFDPMCPA bmy_04964T0/1-774 PFKVWTENAD RSGAVNFLTG MGGFLQAVLF GVTGFRITEA GLTFDPMCPA ENSTTRP00000012848/1-400 PFKVWTENAD ---------- ---------- ---------- ---------- 951 1000 ENSP00000387185/1-737 GISRVSVSGI FYQGNKLNFS FSEDSVTVEV TARAGPWAPH LEAELWPSQS ENSBTAP00000029859/1-691 GISAVCVSGI SYQGSRLDFS LSVGFVTVEV TAQAGPWAPS LEAELWPSRT BACU003643/1-1044 GVSGVCVSGI SYQGSKLDFS FSEGSVTVEV TARAGPWAPR LEAELWPSQV bmy_04964T0/1-774 GVSGVCVSGI SYQGSKLDFS FSEGSVTVEV TARAGSWAPP LEAELWPSQV ENSTTRP00000012848/1-400 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000387185/1-737 RLSLLPGHKV SFPR------ -----SAGRI QMSPPKLPGS SSSEFPGRTF ENSBTAP00000029859/1-691 RLPLPPGRRV CFPC------ -----SAGRI QRSGL----- ---------- BACU003643/1-1044 RLPLSPGWGE MVSAME---- -----VLARA KPAAPDLPEG RAS------- bmy_04964T0/1-774 RLPLSPAHNA ASPCRTQGLL SLLSWPDTKV TPVGSRGSKF CSNSFLGRFF ENSTTRP00000012848/1-400 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000387185/1-737 SDVR------ -DPLQSPLWV TLGSSSPTES LTVDPASE ENSBTAP00000029859/1-691 ---------- ---------- ---------- -------- BACU003643/1-1044 ---------- ---------- -FVCCEELTS SLLNVRIS bmy_04964T0/1-774 EDIKHLRRAH RTPSGTSLGP PAPPSPPHPG PVLPPPPK ENSTTRP00000012848/1-400 ---------- ---------- ---------- --------