KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:39:50 2014 Check: 00 .. Name: ENSTTRP00000015144/1-385 Len: 781 Check: 9592 Weight: 1.00 Name: ENSP00000435585/1-715 Len: 781 Check: 1467 Weight: 1.00 Name: bmy_04985T0/1-482 Len: 781 Check: 7543 Weight: 1.00 Name: ENSBTAP00000029870/1-574 Len: 781 Check: 9408 Weight: 1.00 // 1 50 ENSTTRP00000015144/1-385 ---------- ---------- ---------- ---------- ---------- ENSP00000435585/1-715 MSQSGAVSCC PGATNGSLGR SDGVAKMSPK DLFEQRKKYS NSNVIMHETS bmy_04985T0/1-482 ---------- ---------- ---MAKMSAK DLFEQRKKYS NSNVIMHETS ENSBTAP00000029870/1-574 LALSGGRG-- PLPCSGSLGR PDGVPKMSAK DLFEQRKKYS NSNVIMHETS 51 100 ENSTTRP00000015144/1-385 ---------- ---------- ---------- ---------- ---------- ENSP00000435585/1-715 QYHVQHLATF IMDKSEAITS VDDAIRKLVQ LSSKEKIWTQ EMLLQVNDQS bmy_04985T0/1-482 QYHVQ----- ---------- ---------- ---------- ---------- ENSBTAP00000029870/1-574 QYHVQHLATF IMDKSEAITS VEDAIRKLVQ LSSKEKIWTQ EMLLQVNDQS 101 150 ENSTTRP00000015144/1-385 ---------- ---------- ---------- ---------- ---------- ENSP00000435585/1-715 LRLLDIESQE ELEDFPLPTV QRSQTVLNQL RYPSVLLLVC QDSEQSKPDV bmy_04985T0/1-482 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029870/1-574 LRLLDMESQE ELENFPLPSV RHSQTVLNQL RYPSVLLLVC QDADQSKPDV 151 200 ENSTTRP00000015144/1-385 ---------- ---------- ---------- ---------- ---------- ENSP00000435585/1-715 HFFHCDEVEA ELVHEDIESA LADCRLGKKM RPQTLKGHQE KIRQRQSILP bmy_04985T0/1-482 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029870/1-574 HFFHCDEVEA ELVQEDIESA LADCRLGKKM RPQTLKGHME KIRQRRSILP 201 250 ENSTTRP00000015144/1-385 ---------- ---------- ---------- ---------- ---------- ENSP00000435585/1-715 PPQGPAPIPF QHRGGDSPEA KNRVGPQVPL SEPGFRRRES -QEEPRAVLA bmy_04985T0/1-482 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029870/1-574 AAPGPAPIPF QRFGGDSPST KNRVGLLTPL GELGLRRRES LEEEPRAALA 251 300 ENSTTRP00000015144/1-385 ---------- ---------- ---------- ---------- ---------- ENSP00000435585/1-715 QKIEKETQIL NCALDDIEWF VARLQKAAEA FKQLNQRKKG KKKGKKAPA- bmy_04985T0/1-482 -------QIL NCALDDIEWF VARLQKAAEA FKQLNQRKKG KKKGKKAPAG ENSBTAP00000029870/1-574 QRIEKETQIL NCALDDIEWF VARLQKAAEA FKQLNQRKKG KKKGKKGPA- 301 350 ENSTTRP00000015144/1-385 ---------- ---------- ---------- ---------- ---------- ENSP00000435585/1-715 ---------- ---------- ---------- ---------- ---------- bmy_04985T0/1-482 AGAGAGGTGQ GRGIGVDAGV EVGSTVATEQ SKVRSQRVGD IRLRPDPPGQ ENSBTAP00000029870/1-574 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000015144/1-385 ---------- ---------- ---------- ---------- ---AKLQKHI ENSP00000435585/1-715 ---------- ---EGVLTLR ARPPSEGEFI DCFQKIKLAI NLLAKLQKHI bmy_04985T0/1-482 RCAGQAYPPT PCPEGVLTLR ARPPSEAEFV DCFRKTKLAI NLLAKLQKHI ENSBTAP00000029870/1-574 ---------- ---EGVLTLR ARPPSEAEFV DCFQKTKLAF NLLAKLQKHI 401 450 ENSTTRP00000015144/1-385 QNPSAAELVH FLFGPLDLIV STCGGPDIAR SVYSPLLSRD TVGFLRGHLV ENSP00000435585/1-715 QNPSAAELVH FLFGPLDLIV NTCSGPDIAR SVSCPLLSRD AVDFLRGHLV bmy_04985T0/1-482 QNPSAAELVH FLFGPLDLIV STCGGPDIAR SVSSPLLSRD TVGFLRGHLV ENSBTAP00000029870/1-574 ENPSAAELVH FLFGPLDLIV STCGGPNIAR SVSRPLLSRD AVGFLRGHLV 451 500 ENSTTRP00000015144/1-385 PKEMALWESL GETWTRPRXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000435585/1-715 PKEMSLWESL GESWMRPRSE WPREPQVPLY VPKFHSGWEP PVDVLQEAPW bmy_04985T0/1-482 PKEMALWESL GETWTRPRSE WPREPQVPPY VPKFQSGWEP PLDVLQEAPW ENSBTAP00000029870/1-574 PKEMALWESL GETWTRPRSE WPREPQAPPY VPRFHSGWEP PLDVLQEAPW 501 550 ENSTTRP00000015144/1-385 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXTHR ENSP00000435585/1-715 EVEGLASAPI EEVSPVSRQS IRNSQKHSPT SEPTPPGDAL PPVSSPHTHR bmy_04985T0/1-482 EVEGLASAPG DEPTPVSRTS FRNSPKHGLT SEPTPQGDVL PQVSSPHAHR ENSBTAP00000029870/1-574 EVEGLA-APG DEPAPVSRPS FRNSPKHGLV PEPTPPGDVL PQVSSQHTHR 551 600 ENSTTRP00000015144/1-385 GYEPAPAMAK YVKVLYDFTA RNANELSVLK DEVLEXXXXX XXXXXXXXXX ENSP00000435585/1-715 GYQPTPAMAK YVKILYDFTA RNANELSVLK DEVLEVLEDG RQWWKLRSRS bmy_04985T0/1-482 GYEPAPAMAK YVKVLYDFTA RNANELSVLK DEVLEVLEDD HQWWKLRNRS ENSBTAP00000029870/1-574 GYESVPAMAK YVKVLYDFTA RNANELSVLR DEVLEVLEDG HQWWKLRNRS 601 650 ENSTTRP00000015144/1-385 XXXXXVPG-I LAETRPED-- ALLEQXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000435585/1-715 GQAGYVPCNI LGEARPEDAG APFEQAGQKY WGPASPTHKL PPSFPGNKDE bmy_04985T0/1-482 GQAGYVPGNI LAEARPED-- ALLEQ-GVKY WGPASPTHKL PPGFAGNKGE ENSBTAP00000029870/1-574 GQAGYVPGNI LAETRLED-- VPQEQ--VRS WGWGEP---- ---------- 651 700 ENSTTRP00000015144/1-385 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000435585/1-715 LMQHMDEVND ELIRKISNIR AQPQRHFRVE RSQPVSQPLT YESGPDEVRA bmy_04985T0/1-482 LMQHMDEVND ELIKKISHIK VQPTRHFRVE RSQPVHLPLT YESGPSEVRA ENSBTAP00000029870/1-574 ---------- ---------- ---------- ---------- ----PAAPQH 701 750 ENSTTRP00000015144/1-385 XXXXXXXXXX IVENLGILTG PQLFSLNKDE LRKVCGEEGA RVYSQLTVQK ENSP00000435585/1-715 WLEAKAFSPR IVENLGILTG PQLFSLNKEE LKKVCGEEGV RVYSQLTMQK bmy_04985T0/1-482 WLEAKAFSAR ---------- ---------- ---------- ---------- ENSBTAP00000029870/1-574 WYP------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000015144/1-385 AVLEKQQGGS ELEELMSKFH SKNQRRAEED S ENSP00000435585/1-715 AFLEKQQSGS ELEELMNKFH SMNQRRGEDS - bmy_04985T0/1-482 ---------- ---------- ---------- - ENSBTAP00000029870/1-574 ---------- ---------- ---------- -