KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:55 2014 Check: 00 .. Name: ENSTTRP00000012651/1-469 Len: 469 Check: 8161 Weight: 1.00 Name: BACU004912/1-399 Len: 469 Check: 2246 Weight: 1.00 Name: ENSP00000369424/1-469 Len: 469 Check: 785 Weight: 1.00 Name: bmy_01259T0/1-469 Len: 469 Check: 803 Weight: 1.00 Name: ENSBTAP00000029915/1-425 Len: 469 Check: 7632 Weight: 1.00 // 1 50 ENSTTRP00000012651/1-469 MAADAGFVGS EASPGGGWRE RADGFLLHVD SSRRMGRGGP LHTGRHLGTV BACU004912/1-399 MAADAGFVGS EASPGGGWRE RTDGFLLHVD SSRRVGRGGP LHTGRHLGTV ENSP00000369424/1-469 MAAEAGVVGA GASPDGDWRD QACGLLLHVH LSSRLGRAAP VRTGRHLRTV bmy_01259T0/1-469 MAADAGFVGS EASPGGGWRE RTDGFLLHVD SSRRVGRGGP LHTGRHLGTV ENSBTAP00000029915/1-425 MASKE----- ---------- ---------- ---------- ---------M 51 100 ENSTTRP00000012651/1-469 FEDTVEERVI NEEYKIWKKN TPFLYDLVMT HALQWPSLTV QWLPEVTXXX BACU004912/1-399 FEDTVEERVI NEEYKIWKKN TPFLYDLVMT HALQWPSLTV QWLPEVTKPE ENSP00000369424/1-469 FEDTVEERVI NEEYKIWKKN TPFLYDLVMT HALQWPSLTV QWLPEVTKPE bmy_01259T0/1-469 FEDTVEERVI NEEYKIWKKN TPFLYDLVMT HALQWPSLTV QWLPEVTKPE ENSBTAP00000029915/1-425 FEDTVEERVI NEEYKIWKKN TPFLYDLVMT HALQWPSLTV QWLPEVTKPE 101 150 ENSTTRP00000012651/1-469 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXFGG BACU004912/1-399 GKDYALHWLV LGTHTSDEQN HLVVARVHIP NDDAQFDASH SDREKGEFGG ENSP00000369424/1-469 GKDYALHWLV LGTHTSDEQN HLVVARVHIP NDDAQFDASH CDSDKGEFGG bmy_01259T0/1-469 GKDYALHWLV LGTHTSDEQN HLVVARVHIP NDDAQFDASH CDSEKGEFGG ENSBTAP00000029915/1-425 GKDYALHWLV LGTHTSDEQN HLVVARVHIP NDDAQFDASH CDSEKGEFGG 151 200 ENSTTRP00000012651/1-469 FGSVTGKIEC EIKINHEGEV NRARYMPQNP HIIATKTPSS DVLVFDYTKH BACU004912/1-399 FGSVTGKIEC EIKINHEGEV NRARYMPQNP HIIATKTPSS DVLVFDYTKH ENSP00000369424/1-469 FGSVTGKIEC EIKINHEGEV NRARYMPQNP HIIATKTPSS DVLVFDYTKH bmy_01259T0/1-469 FGSVTGKIEC EIKINHEGEV NRARYMPQNP HIIATKTPSS DVLVFDYTKH ENSBTAP00000029915/1-425 FGSVTGKIEC EIKINHEGEV NRARYMPQNP HIIATKTPSS DVLVFDYTKH 201 250 ENSTTRP00000012651/1-469 PAKPDPSGKC NPDLRLKGHQ KEGYGLSWNS NLSGHLLSAS DDHTVCLWDI BACU004912/1-399 PAKPDTSEEC NPDLRLRGHQ KEGYGLSWNS NLSGHLLSAS DDHTVCLWDI ENSP00000369424/1-469 PAKPDPSGEC NPDLRLRGHQ KEGYGLSWNS NLSGHLLSAS DDHTVCLWDI bmy_01259T0/1-469 PAKPDPSGEC NPDLRLRGHQ KEGYGLSWNS NLSGHLLSAS DDHTVCLWDI ENSBTAP00000029915/1-425 PAKPDPSGEC NPDLRLRGHQ KEGYGLSWNS NLSGHLLSAS DDHTVCLWDI 251 300 ENSTTRP00000012651/1-469 NAGPKEGKIV DAKAIFTGHS AVVEDVAWHL LHESLFGSVA DDQKLMIWDT BACU004912/1-399 NAGPKEGKIV DAKAIFTGHS AVVEDVAWHL LHESLFGSVA DDQKLMIWDT ENSP00000369424/1-469 NAGPKEGKIV DAKAIFTGHS AVVEDVAWHL LHESLFGSVA DDQKLMIWDT bmy_01259T0/1-469 NAGPKEGKIV DAKAIFTGHS AVVEDVAWHL LHESLFGSVA DDQKLMIWDT ENSBTAP00000029915/1-425 NAGPKEGKIV DAKAIFTGHS AVVEDVAWHL LHESLFGSVA DDQKLMIWDT 301 350 ENSTTRP00000012651/1-469 RSNTTSKPSH LVDAHTAEVN CLSFNPYSEF ILATGSADKT VALWDLRNLK BACU004912/1-399 RSNTTSKPSH LVDAHTAEVN CLSFNPYSEF ILATGSADKT VALWDLRNLK ENSP00000369424/1-469 RSNTTSKPSH LVDAHTAEVN CLSFNPYSEF ILATGSADKT VALWDLRNLK bmy_01259T0/1-469 RSNTTSKPSH LVDAHTAEVN CLSFNPYSEF ILATGSADKT VALWDLRNLK ENSBTAP00000029915/1-425 RSNTTSKPSH LVDAHTAEVN CLSFNPYSEF ILATGSADKT VALWDLRNLK 351 400 ENSTTRP00000012651/1-469 LKLHTFESHK DEIFQVHWSP HNETILASSG TDRRLNVWDL SKIGEEQSAE BACU004912/1-399 LKLHTFESHK DEIFQVHWSP HNETILASSG TDRRLNVWDL RY-------- ENSP00000369424/1-469 LKLHTFESHK DEIFQVHWSP HNETILASSG TDRRLNVWDL SKIGEEQSAE bmy_01259T0/1-469 LKLHTFESHK DEIFQVHWSP HNETILASSG TDRRLNVWDL SKIGEEQSAE ENSBTAP00000029915/1-425 LKLHTFESHK DEIFQVHWSP HNETILASSG TDRRLNVWDL SKIGEEQSAE 401 450 ENSTTRP00000012651/1-469 DAEDGPPELL FIHGGHTAKI SDFSWNPNEP WVICSVSEDN IMQIWQMAEN BACU004912/1-399 -------ELP L--------- ---------- WVV------- ---------- ENSP00000369424/1-469 DAEDGPPELL FIHGGHTAKI SDFSWNPNEP WVICSVSEDN IMQIWQMAEN bmy_01259T0/1-469 DAEDGPPELL FIHGGHTAKI SDFSWNPNEP WVICSVSEDN IMQIWQMAEN ENSBTAP00000029915/1-425 DAEDGPPELL FIHGGHTAKI SDFSWNPNEP WVICSVSEDN IMQIWQMAEN 451 500 ENSTTRP00000012651/1-469 IYNDEESDVT TSELEGQGS BACU004912/1-399 ---------- --------- ENSP00000369424/1-469 IYNDEESDVT TSELEGQGS bmy_01259T0/1-469 IYNDEESDVT TSELEGQGS ENSBTAP00000029915/1-425 IYNDEESDVT TPELEGQGS