KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:57 2014 Check: 00 .. Name: bmy_09308T0/1-493 Len: 723 Check: 2662 Weight: 1.00 Name: ENSP00000389252/1-595 Len: 723 Check: 4668 Weight: 1.00 Name: ENSTTRP00000004646/1-560 Len: 723 Check: 8223 Weight: 1.00 Name: ENSBTAP00000029938/1-593 Len: 723 Check: 6811 Weight: 1.00 Name: BACU014384/1-581 Len: 723 Check: 2312 Weight: 1.00 // 1 50 bmy_09308T0/1-493 MLPESARART PGPEEPLPAQ KQHFATGKLF DKLWKIQLNQ LHAFKANPEM ENSP00000389252/1-595 --MDFLLALV LVSSLYLQAA AE-------F DGRW------ ---------- ENSTTRP00000004646/1-560 --MDFLLALV LGSSLYLQAA AE-------F DGRW------ ---------- ENSBTAP00000029938/1-593 --MDFLLALL LGSSLYLQAA AE-------F DGRW------ ---------- BACU014384/1-581 --MDFLLALV LGSSLYLQAA AE-------F DGRW------ ---------- 51 100 bmy_09308T0/1-493 LSDSLKFPSK CVHKLKIKRT RLGEREGSEA MYFKNQSAVD GVEMYQHQDM ENSP00000389252/1-595 -------PRQ IVSSIGL--C RYGGR----- ---------- ---------- ENSTTRP00000004646/1-560 -------PRQ IVSSIGL--C RYGGR----- ---------- ---------- ENSBTAP00000029938/1-593 -------PRQ IVSSIGL--C RYGGR----- ---------- ---------- BACU014384/1-581 -------PRQ IVSSIGL--C RYGGR----- ---------- ---------- 101 150 bmy_09308T0/1-493 LERKGNTQYV RNRKALKVAY VFLRLKAENS QDKVPAQSEQ CYLTNHPCDT ENSP00000389252/1-595 ---------- -----IDCCW GWAR------ -----QSWGQ C--------- ENSTTRP00000004646/1-560 ---------- -----IDCCW AWAR------ -----RSWGQ C--------- ENSBTAP00000029938/1-593 ---------- -----IDCCW GWAR------ -----RPWGQ C--------- BACU014384/1-581 ---------- -----IDCCW AWAR------ -----RSWGQ C--------- 151 200 bmy_09308T0/1-493 FVEIFVYHFG LQP------- -----PKEMT VCQPQCKHGE CIGPNKCKCH ENSP00000389252/1-595 ---------- -QP------- ---------- VCQPRCKHGE CIGPNKCKCH ENSTTRP00000004646/1-560 ---------- -QP------- ---------- VCQPQCKHGE CIGPNKCKCH ENSBTAP00000029938/1-593 ---------- -QP------- ---------- VCQPQCKHGE CVGPNKCKCH BACU014384/1-581 ---------- -QPFYVLRQR IARIRCQLKA VCQPQCKHGE CIGPNKCKCH 201 250 bmy_09308T0/1-493 PGYAGKTCNQ ---------- ---------- ---------- -DLNECGLKP ENSP00000389252/1-595 PGYAGKTCNQ DEHI-PAPLD QGSEQPLFQP LDHQATSLPS RDLNECGLKP ENSTTRP00000004646/1-560 PGYAGKTCNQ ---------- ---------- ---------- -DLNECGLKP ENSBTAP00000029938/1-593 PGFAGKTCNQ DEHLYPTPLD QGSEQPLLQP PDHPATSLPS RDLNECGLKP BACU014384/1-581 PGYAGKTCNQ ---------- ---------- ---------- -DLNECGLKP 251 300 bmy_09308T0/1-493 RPCKHRCMNT YGSYKCYCLN GYMLMPDGSC SSALTCSMAN CQYGCDVVKG ENSP00000389252/1-595 RPCKHRCMNT YGSYKCYCLN GYMLMPDGSC SSALTCSMAN CQYGCDVVKG ENSTTRP00000004646/1-560 RPCKHRCMNT YGSYKCYCLN GYMLMPDGSC SSALTCSMAN CQYGCDVVKG ENSBTAP00000029938/1-593 RPCKHRCMNT FGSYKCYCLS GYMLLPDGSC SSALTCSMAN CQYGCDVVKG BACU014384/1-581 RPCKHRCMNT YGSYKCYCLN GYMLMPDGSC SSALTCSMAN CQYGCDVVKG 301 350 bmy_09308T0/1-493 QIRCQCPSPG LRLAPDGRTC VDIDECATGR ASCPRYRQCV NTFGSYICKC ENSP00000389252/1-595 QIRCQCPSPG LQLAPDGRTC VDVDECATGR ASCPRFRQCV NTFGSYICKC ENSTTRP00000004646/1-560 QIRCQCPSPG LRLAPDGRTC VDIDECATGR ASCPRYRQCV NTFGSYICKC ENSBTAP00000029938/1-593 QIRCKCPSPG LQLAPDGRTC VDIDECATGR ASCPRHRQCV NTFGSYICKC BACU014384/1-581 QIRCQCPSPG LRLAPDGRTC VDIDECATGR ASCPRYRQCV NTFGSYICKC 351 400 bmy_09308T0/1-493 HKGFDLMYIG GKYQCHDIDE CSLGQYQCSN FARCYNIHGS YKCKCKDGYQ ENSP00000389252/1-595 HKGFDLMYIG GKYQCHDIDE CSLGQYQCSS FARCYNIRGS YKCKCKEGYQ ENSTTRP00000004646/1-560 HKGFDLMYIG GKYQCHDIDX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000029938/1-593 HKGFDLMYIG GKYQCHDIDE CSLGQYQCSS FARCYNIHGS YKCKCKDGYQ BACU014384/1-581 HKGFDLMYIG GKYQCHDIDE CSLGQYQCSS FARCYNIHGS YKCKCKDGYQ 401 450 bmy_09308T0/1-493 GDGLNCVYIP KVMIEPSGPI HVPKENGTIS RGDGGHSNWI PDVRSTRWPL ENSP00000389252/1-595 GDGLTCVYIP KVMIEPSGPI HVPKGNGTIL KGDTGNNNWI PDVGSTWWPP ENSTTRP00000004646/1-560 XXXXXXXXIP KVMIEPSGPI HVPKENGTIS RGDGGHSNWI PDVRSTRWPL ENSBTAP00000029938/1-593 GDGLNCVYIP RVMIEPSGPI HVPKGNGTIS KGDGGHGNWI PDVRSTRWPL BACU014384/1-581 GDGLNCVYIP KVMIEPSGPI HVPKENGTIS RGDGGHSNWI PDVRSTRWPL 451 500 bmy_09308T0/1-493 KTPYVPAVIT SRPTPEPTAR PALKPAPQPA ----P--PTE LRTPPPAATP ENSP00000389252/1-595 KTPYIPPIIT NRPTSKPTTR PTPKPTPIPT PPPPPPLPTE LRTPLPPTTP ENSTTRP00000004646/1-560 KTPYVPAVIT SRPTSEPTAR PALKPAPQPA ----P--PTE LRTPPPAAAP ENSBTAP00000029938/1-593 KTPYMPPVMI DRPTSKPTAR PTPKPIPEPT PPPPP--PTE LRTPPPATAP BACU014384/1-581 KTPYVPAVIT SRPTPEPTAR PALKPAPQPA ----P--PTE LRTPPPAATP 501 550 bmy_09308T0/1-493 GRPTTRLTSV APVATXSPRR ITVDNRIQTE PQKPRGDVFS KS-------- ENSP00000389252/1-595 ERPTTGLTTI APAASTPPGG ITVDNRVQTD PQKPRGDVFI PRQPSNDLFE ENSTTRP00000004646/1-560 GGPTTSLTSV APVATVSPRR ITVDNRIQTE PQKPRGDVFI PRQPSNDLFE ENSBTAP00000029938/1-593 ERPTTRLTTV APVATTSPRE ITVDNKIQTD TQKPRGDVFI PRQPSNDLFE BACU014384/1-581 GRPTTRLTSV APVATVSPKR ITVDNRIQTE PQKPRGDVFI PRQPSNDLFE 551 600 bmy_09308T0/1-493 ---------- ---------- ---------- ---------- ---------- ENSP00000389252/1-595 IFEIERGVSA DDEAKDDPGV LVHSCNFDHG LCGWIREKDN DLHWEPIRDP ENSTTRP00000004646/1-560 IFEIERGVSA DDEAKDDPGV LIHSCNFDHG LCGWIREKDS DLHWEPVRDP ENSBTAP00000029938/1-593 IFEIERGVSA DDEAKDDPGV LIHSCNFDHG LCGWIREKDS DVHWEPVRDP BACU014384/1-581 IFEIERGVSA DDEAKDDPGV LIHSCNFDHG LCGWIREKDS DLHWEPVRDP 601 650 bmy_09308T0/1-493 ---------- ---------- ---------- ---------- ---------- ENSP00000389252/1-595 AGGQYLTVSA AKAPGGKAAR LVLPLGRLMH SGDLCLSFRH KVTGLHSGTL ENSTTRP00000004646/1-560 AGGQYLTVSA AKGPAGKAAR LLLPLGHLLH SGDLCLSFRH KVTGLHSGTL ENSBTAP00000029938/1-593 AGGQYLTVSA AKGPLGRAAR LLLPLGHLLH AGDLCLSFRH KVTGLHSGTL BACU014384/1-581 AGGRYLTVSA AKGPAAKAAR LLLPLGHLLH SGDLCLSFRH KVTGLHAGTL 651 700 bmy_09308T0/1-493 ---------- ---------- ---------- ---------- ---------- ENSP00000389252/1-595 QVFVRKHGAH GAALWGRNGG HGWRQTQITL RGADIKSVVF KGEKRRGHTG ENSTTRP00000004646/1-560 QVFVRKHGAH GAALWGRNGG HSWRQTRITL RGADVKSVIF KGEKRRGHTG ENSBTAP00000029938/1-593 QVLVRKHGAH GAALWGRNGG HGWRQTHITL RGADIKSVIF KGEKRHGHTG BACU014384/1-581 QVLVRKHGAH GAALWGRNGG HGWRQTRIAL RGADVKSVIF KGEKRRGHTG 701 750 bmy_09308T0/1-493 ---------- ---------- --- ENSP00000389252/1-595 EIGLDDVSLK KGHCSEER-- --- ENSTTRP00000004646/1-560 EIGLDDVSLK KGHCSEERE- --- ENSBTAP00000029938/1-593 EIGLDDVSLK KGHCSEE--- --- BACU014384/1-581 EIGLDDVSLK KGHCSEEHEQ LQN