KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:58 2014 Check: 00 .. Name: ENSTTRP00000012589/1-220 Len: 358 Check: 7266 Weight: 1.00 Name: ENSP00000294288/1-220 Len: 358 Check: 8359 Weight: 1.00 Name: ENSBTAP00000029967/1-163 Len: 358 Check: 7981 Weight: 1.00 Name: bmy_07842T0/1-140 Len: 358 Check: 4034 Weight: 1.00 Name: BACU003542/1-358 Len: 358 Check: 887 Weight: 1.00 // 1 50 ENSTTRP00000012589/1-220 MGN-SKRPQH RGP------- ---------- ---------- ---------- ENSP00000294288/1-220 MGNCAKRPWR RGP------- ---------- ---------- ---------- ENSBTAP00000029967/1-163 MGNCAKRPRH RAP------- ---------- ---------- ---------- bmy_07842T0/1-140 ---------- ---------- ---------- ---------- ---------- BACU003542/1-358 MFAKEIREWM AGPADGSLPT GDPSPSEGTP GPSRAPASPA ATRRRALLQE 51 100 ENSTTRP00000012589/1-220 ---------- KDCWQWPGSP PRGSRHGLGP SPKEQRSPGP GVQGCYSVLS ENSP00000294288/1-220 ---------- KDPLQWLGSP PRGSCPSPSS SPKEQGDPAP GVQG-YSVLN ENSBTAP00000029967/1-163 ---------- KD-------- ---------- ---------- ---------- bmy_07842T0/1-140 ---------- ---------- ---------- ---------- ---------- BACU003542/1-358 LETQVQAAYG QDCWQWPGSP PWGSRHGLGP SPEEQGSPGP GVQGCYSVLS 101 150 ENSTTRP00000012589/1-220 SLVGPACVFL QPSIAATQLD RELRPEEIEE LQAAFQEFDR DRDGYIGYGE ENSP00000294288/1-220 SLVGPACIFL RPSIAATQLD RELRPEEIEE LQVAFQEFDR DRDGYIGCRE ENSBTAP00000029967/1-163 ---------- ---------- RELRPEEIEE LQAAFQEFDR DRDGYIGYQE bmy_07842T0/1-140 ---------- ---------- RELRPEEIEE LQAAFQEFDR DRDGYIGYRE BACU003542/1-358 SLVAPACVFL RPSIAATQLD RELRPEEIEE LQAAFQEFDR DRDGYIGYRE 151 200 ENSTTRP00000012589/1-220 LGACMRTMGY MPTEMELIEI SQQISGGKVD FDDFLELMGP KLLAETADMI ENSP00000294288/1-220 LGACMRTLGY MPTEMELIEI SQQISGGKVD FEDFVELMGP KLLAETADMI ENSBTAP00000029967/1-163 LGACMRTLGY MPTEMELIEI SQQISGGKVD FEDFVELMGP KLLAETADMI bmy_07842T0/1-140 LGACMRTLGY MPTEMELIEI SQQISGGKVD FGDFVELMGP KLLAETADMI BACU003542/1-358 LGACMRTLGY MPTEMELIEI SQQISGGKVD FDDFVELMGP KLLAETADMI 201 250 ENSTTRP00000012589/1-220 GVRELRDAFR EFDTNRDGCI SLGELRAALK ALLGERLSQR EVDEIFHDID ENSP00000294288/1-220 GVRELRDAFR EFDTNGDGRI SVGELRAALK ALLGERLSQR EVDEILQDVD ENSBTAP00000029967/1-163 GVRELRDAFR EFDTNGDGCI SLGELRAALK ALLGERLSQR EVDEILRDID bmy_07842T0/1-140 GVRELRDAFR EFDTNGDGCI SLGELRAALK ALLGERLSQR EVDEILRDID BACU003542/1-358 GVRELRDAFR EFDTNGDGCI SLGELRAALK ALLGERLSQR EVDEILRDID 251 300 ENSTTRP00000012589/1-220 LNGDGLVDFE E--------- ---------- ---------- -FVRMMSR-- ENSP00000294288/1-220 LNGDGLVDFE E--------- ---------- ---------- -FVRMMSR-- ENSBTAP00000029967/1-163 LNGDGLVDFE E--------- ---------- ---------- -FVRMMSR-- bmy_07842T0/1-140 LNGDGLVDFE ---------- ---------- ---------- ---------- BACU003542/1-358 LNGDGLVDFE AGSVPSPSGS VPGAAAPFRP LFNDFGPPSM GYVQAMKPPG 301 350 ENSTTRP00000012589/1-220 ---------- ---------- ---------- ---------- ---------- ENSP00000294288/1-220 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029967/1-163 ---------- ---------- ---------- ---------- ---------- bmy_07842T0/1-140 ---------- ---------- ---------- ---------- ---------- BACU003542/1-358 AQGSQSTYTD LLSVIEEMGK EIRPTYAGSK SAMERLKRGT SGRLSLQSAA 351 400 ENSTTRP00000012589/1-220 -------- ENSP00000294288/1-220 -------- ENSBTAP00000029967/1-163 -------- bmy_07842T0/1-140 -------- BACU003542/1-358 LTGNPQKS