KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:39:58 2014 Check: 00 .. Name: bmy_07700T0/1-370 Len: 371 Check: 6724 Weight: 1.00 Name: ENSBTAP00000029993/1-293 Len: 371 Check: 8184 Weight: 1.00 Name: BACU012789/1-299 Len: 371 Check: 6724 Weight: 1.00 Name: ENSTTRP00000013974/1-312 Len: 371 Check: 259 Weight: 1.00 // 1 50 bmy_07700T0/1-370 -SSENAGYPA PKDDYPAHQA GYSETQTENT VPKAGCSASQ PGFSGMQSEY ENSBTAP00000029993/1-293 MDKQNVQMNP PH---PGTNL ---------- ---TG-PPGH IGYPGPQAGY BACU012789/1-299 MDKQNVQMND PH---PGTQL ---------- ---PG-PPGY TGYPGTQAGY ENSTTRP00000013974/1-312 MDKQNVQMND PP---PGTQL PGGYPPEHPP AAFPG-PPGY TAYPGTQAGY 51 100 bmy_07700T0/1-370 LILPPGYSVV GAVGIPVQFQ PVSLQPSVPA RLLWIPKLPS SSDCPPGLEY ENSBTAP00000029993/1-293 AVPPPGYASP GPVGFPVQHQ PVTGHPGAPT QVPWMPAPLP PLNCPPGLEY BACU012789/1-299 PVPPAGYSGA GPVGFPVPYQ PVTSQPGVPA GVPWMPAPPP PLNCPPGLEY ENSTTRP00000013974/1-312 PVPPAGYSGA GPVGFPVPYQ PVTSQPGAPA GVPWMPAPSP PLNCPPGLEY 101 150 bmy_07700T0/1-370 LNQVDQIQIH QQIELTEVII SYETXNKYEI KNSLGQRIYX AAEDTALCTR ENSBTAP00000029993/1-293 LTQIDQLLIH QQIELLEVLI GFETNNKYEI KNSLGQRIYF AAEDTDCCTR BACU012789/1-299 LTQIDQLLIH QQIELLEVLT GFETCNKYEI KNSLGQRIYF AAEDTDCCTR ENSTTRP00000013974/1-312 LTQXXXXXXX XXXXXXXXLT GFETCNKYEI KNSLGQRIYF AAEDTDCCTR 151 200 bmy_07700T0/1-370 FCYGSYRPFI MRIHDLKGQE VITLKRPLRC TSCCFPCCLQ EVGEQLPGYF ENSBTAP00000029993/1-293 NCCGPSRPFT MRILDNMGRE VITLERPLRC TSCCFPCCLQ E--------- BACU012789/1-299 NCCGPSRPFT IRILDNTGRE VITLERPLRC TSCCFPCCLQ E--------- ENSTTRP00000013974/1-312 NCCGPSRPFT MRILDNMGRE VITLDRPLRC TSCCFPCCLQ E--------- 201 250 bmy_07700T0/1-370 IEIYAPPXIP IGYVTQTWHP YLPKFTIQNE NKKDVLRIIG PYFVCNTCGN ENSBTAP00000029993/1-293 IEIQAPPGVP VGYVTQTWHP CLPKFTIQNE RREDVLRISG PCVICSCCAD BACU012789/1-299 IEIQAPPGVP VGYVTQTWHP CLPKFTLQNE RREDVLRITG PCIVCSCCAD ENSTTRP00000013974/1-312 IEIQAPPGVP VGYVTQTWHP CLPKFTLQNE RREDVLRLTG PCIVCSCCAD 251 300 bmy_07700T0/1-370 VEFKIKSLDG KNVVGKISKQ FTRLMREIFT HYSNFVIQFP ADIDVKMKAV ENSBTAP00000029993/1-293 IDFEVKSLDD KYVVGKISKH WTGLIKELFT DVDNFGIQFP LDLDVKMKAV BACU012789/1-299 VDFEIKSLDD KYVVGKISKQ WTGFVRELFT DVDNFGIQFP LDLDVKMKAV ENSTTRP00000013974/1-312 VDFEIKSLDD KYAVGKISKQ WTGLVRELFT DVDNFGIQFP LDLDVKMKAV 301 350 bmy_07700T0/1-370 ILGMCFLIKD RFWCLLERNE FERYITVFYQ IPQHLCIRII SVLLLKIHFC ENSBTAP00000029993/1-293 MLGACFLI-- ---------- ---------- ---------- ---------- BACU012789/1-299 MLGACFLI-- ---------- ---------- ---------- ---------- ENSTTRP00000013974/1-312 MLGACFLI-- ---------- ---------- ---------- ---------- 351 400 bmy_07700T0/1-370 IFDFMFYDNN GCIQLLTAGT W ENSBTAP00000029993/1-293 --DFMFFEMT RGE------- - BACU012789/1-299 --DFMFFEMT RSEQ--RAGV W ENSTTRP00000013974/1-312 --DFMFFERT RNEQ--RAGV W