KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:39:59 2014  Check: 00 ..

 Name: ENSBTAP00000030041/1-156  Len:    169  Check:  3433  Weight:  1.00
 Name: ENSP00000337393/1-169     Len:    169  Check:  574  Weight:  1.00
 Name: bmy_15684T0/1-138         Len:    169  Check:  8334  Weight:  1.00
 Name: BACU008465/1-156          Len:    169  Check:  3429  Weight:  1.00
 Name: ENSTTRP00000003955/1-168  Len:    169  Check:  5452  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000030041/1-156  ---------- --MATPPKRR AVEATAEKVL RYEAFISDVL QRDLQKVLDH 
ENSP00000337393/1-169     MVFPLPTPQE PIMATPPKRR AVEATGEKVL RYETFISDVL QRDLRKVLDH 
bmy_15684T0/1-138         ---------- --MATPPKRR AVEATAEKVL RYEAFISDVL QRDLRKVLDH 
BACU008465/1-156          ---------- --MATPPKRR AVEATAEKVL RYEAFISDVL QRDLRKVLDH 
ENSTTRP00000003955/1-168  VVFPLLIPQE PIMATPPKRR AVEATAEKVL RYEAFISDVL QRDLRKVLDH 


                          51                                                 100
ENSBTAP00000030041/1-156  RDKVYEQLAK YLQLRNVIER LQEANHSELY MQVDLGCNFF VDTVVPDTSR 
ENSP00000337393/1-169     RDKVYEQLAK YLQLRNVIER LQEAKHSELY MQVDLGCNFF VDTVVPDTSR 
bmy_15684T0/1-138         RDKVYEQLAK YLQLRNVIER LQ-------- ---------- VKMPGPDTSR 
BACU008465/1-156          RDKVYEQLAK YLQLRNVIER LQEANHSELY MQVDLGCNFF VDTVVPDTSR 
ENSTTRP00000003955/1-168  RDKVYEQLAK YLQLRNVIER LQEANHSELY MQVDLGCNFF VDTVVPDTSR 


                          101                                                150
ENSBTAP00000030041/1-156  IYVALGYGFF LELTLAEALK FIDRKSSLLT ELSDNLTKDS MNIKAHIHML 
ENSP00000337393/1-169     IYVALGYGFF LELTLAEALK FIDRKSSLLT ELSNSLTKDS MNIKAHIHML 
bmy_15684T0/1-138         IYVALGYGFF LELTLAEALR FIDRKSSLLT ELSNSLTKDS MNIKAHIHML 
BACU008465/1-156          IYVALGYGFF LELTLAEALR FIDRKSSLLT ELSNSLTKDS MNIKAHIHML 
ENSTTRP00000003955/1-168  IYVALGYGFF LELTLAEALR FIDRKSSLLT ELSDSLTKDS MNIKAHIHML 


                          151                                                200
ENSBTAP00000030041/1-156  LEGLRELQGL QNFPE-TQH 
ENSP00000337393/1-169     LEGLRELQGL QNFPEKPHH 
bmy_15684T0/1-138         LEGLRELQGL QNFPE-PHH 
BACU008465/1-156          LEGLRELQGL QNFPE-PHH 
ENSTTRP00000003955/1-168  LEGLRELQGL QNFPE-PHH