KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:40:00 2014 Check: 00 .. Name: ENSTTRP00000003976/1-886 Len: 927 Check: 6097 Weight: 1.00 Name: ENSP00000363822/1-920 Len: 927 Check: 5353 Weight: 1.00 Name: ENSBTAP00000030053/1-890 Len: 927 Check: 2305 Weight: 1.00 Name: bmy_16443T0/1-650 Len: 927 Check: 747 Weight: 1.00 Name: BACU011390/1-566 Len: 927 Check: 454 Weight: 1.00 // 1 50 ENSTTRP00000003976/1-886 MEVQLGLGRV YPRPPSKTYR GAFQNLFQSV CEVIQNPGPR HPAAASAAPP ENSP00000363822/1-920 MEVQLGLGRV YPRPPSKTYR GAFQNLFQSV REVIQNPGPR HPEAASAAPP ENSBTAP00000030053/1-890 MEVQLGLGRV YPRPPSKTYR GAFQNLFQSV CEVIQNPLPR HPEASSAAPS bmy_16443T0/1-650 MEVQLGLGRV YPRPPSKTYR GAFQNLFQSV REVIQNPGPR HPEAASAAPP BACU011390/1-566 MEVQLGLGRV YPRPPSKTYR GAFQNLFQSV REVIQNPGPR HPEAASAAPP 51 100 ENSTTRP00000003976/1-886 GARL--QQQQ EQS-QQQQQ- ---------- -----QRQQQ QSEDGSPQVQ ENSP00000363822/1-920 GASLLLLQQQ QQQQQQQQQQ QQQQQQQQQQ ETSPRQQQQQ QGEDGSPQAH ENSBTAP00000030053/1-890 GARL--QQQQ ETSPRQQQQ- ---------- -------QQQ QREDGSPQVQ bmy_16443T0/1-650 GARL--QQQQ ETSPQQQQQ- ---------- -----QQQQQ QSEDGSPQVQ BACU011390/1-566 GARLQQQQQQ ETSPQQQQQ- ---------- -----QQQQQ QSEDGSPQVQ 101 150 ENSTTRP00000003976/1-886 SRGPTGYLSL DEGQQSSQQQ SAPEDPPDRG CVPEPGAASA AGKGLQQPPP ENSP00000363822/1-920 RRGPTGYLVL DEEQQPSQPQ SALECHPERG CVPEPGAAVA ASKGLPQQLP ENSBTAP00000030053/1-890 SRGPTGYLAL EEEQQPSQHH SAPEGHPESG CVPEPRAASA AGKGLQQPPP bmy_16443T0/1-650 SRGPTGYLAL DEEQQSSQQQ SAPEGPPEGG CVPEPGAASA AGKGLQQPPP BACU011390/1-566 SRGPTGYLAL EEEQQSLQQQ SAPEGPPESG CVPEPGAASA AGRGLQQPPP 151 200 ENSTTRP00000003976/1-886 APPEEDDSAA PSTLSLLGPT FPGLSSCSTD LKDILSEAGT MQXXXXXXXX ENSP00000363822/1-920 APPDEDDSAA PSTLSLLGPT FPGLSSCSAD LKDILSEAST MQLL----QQ ENSBTAP00000030053/1-890 APLDEDDSAA PSTLSLLGPT FPGLSSCSTD LKDILSEAGT MQLL-QQQQQ bmy_16443T0/1-650 APPDEDDSAA PSTLSLLGPT FPGLSSCSTD LKDILSEAGT MQLLQQQQQQ BACU011390/1-566 APPDEDDSAA PSTLSLLGPT FPGLSSCSTD LKDILSEAGT MQLLQQQQQQ 201 250 ENSTTRP00000003976/1-886 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000363822/1-920 QQQEAVSEG- SSSGRAREAS GAPTSSKDNY LGGTSTISDN AKELCKAVSV ENSBTAP00000030053/1-890 QQQEAVSEG- -SSGRAREAT GAPISSKDSY LGGSSTISDS AKELCKAVSV bmy_16443T0/1-650 QQQEAVSEGS SSSGRAREAT GAPISSKDSY LGGSSTISDS AKELCKAVSV BACU011390/1-566 QQQEAVSEGS SSSGRAREAT GAPISSKDSY LGGSSTISDS AKELCKAVSV 251 300 ENSTTRP00000003976/1-886 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX-----XX XXXXXXXXXX ENSP00000363822/1-920 SMGLGVEALE HLSPGEQLRG DCMYAPLLGV PPAVRPTPCA PLAECKGSLL ENSBTAP00000030053/1-890 SMGLGVEALE HLSPGEQLRG DCMYAPLLGP PAAVRPTPCA PLAECKGSLL bmy_16443T0/1-650 SMGLGVEALE HLSPGEQLRG DCMYAPLLGG PPAVRPTPCA PLAECKGSLL BACU011390/1-566 SMGLGVEALE HLSPGEQLRG DCMYAPLLGG PPAVRPTPCA PLAECKGSLL 301 350 ENSTTRP00000003976/1-886 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000363822/1-920 DDSAGKSTED TAEYSPFKGG YTKGLEGESL GCSGSAAAGS SGTLELPSTL ENSBTAP00000030053/1-890 DDGPSKGTEE TAEYSPFKAG YTKGLDTESL SCSGSGEAGG SGTLELPSTL bmy_16443T0/1-650 DDGPSKGTEE TAEYSPFKAG YTKGLDSESL GCSGSGEAGG SGTLELPSAL BACU011390/1-566 DDGPSKGTEE TAEYSPFKAG YTKGLDSESL GCSGSGEAGG SGTLELPSAL 351 400 ENSTTRP00000003976/1-886 XXXXSGALDE VAAYQIRDYY NFPLALAGPL PPPPPPHPHA RIKLENPLDY ENSP00000363822/1-920 SLYKSGALDE AAAYQSRDYY NFPLALAGPP PPPPPPHPHA RIKLENPLDY ENSBTAP00000030053/1-890 SLYKSGALDE VAAYQTRDYY NFPLALAGPP PPPPPPHPHA RIKLENPLDY bmy_16443T0/1-650 SLYKSGALDE VAAYQSRDYY NFPLALAGPP PPPPPPHPHA RIKLENPLDY BACU011390/1-566 SLYKSGALDE -----SRDYY NFPLALAGPP PPPPPPHPHA RIKLENPLDY 401 450 ENSTTRP00000003976/1-886 GSAWAAAAAQ CRYGDLASLH GGGAAGPGSG SPSAAASSSW HTLFTAEEGQ ENSP00000363822/1-920 GSAWAAAAAQ CRYGDLASLH GAGAAGPGSG SPSAAASSSW HTLFTAEEGQ ENSBTAP00000030053/1-890 GSAWVAAAAQ CRYGDLASLH GGGAAGPGSG SPSAAASSSW HTLFTAEEGQ bmy_16443T0/1-650 GSAWAAAAAQ CRYGDLASLQ GGGAAGPGSG SPSAAASSSW HTLFTAEEGQ BACU011390/1-566 GSAWEAAAAQ CRYGDVASLQ GGGAAGPGSG SPSAAASSSW HTLFTAEEGQ 451 500 ENSTTRP00000003976/1-886 LYGP--C--- ---------- -GGGGGGSAG EAGAVAPYGY TRPPQGLAGQ ENSP00000363822/1-920 LYGP--CGGG GGGGGGGGGG GGGGGGGGGG EAGAVAPYGY TRPPQGLAGQ ENSBTAP00000030053/1-890 LYGPAVC--- ---------- -GGGGGGSAG EAGAVAPYGY TRPPQGLAGQ bmy_16443T0/1-650 LYGP--C--- ---------- -GGGGGGSAG EAGAVAPYGY TRPPQGLAGQ BACU011390/1-566 LYGP--C--- ---------- -GGGGGGSAG EAGAVAPYGY TRPPQELAGQ 501 550 ENSTTRP00000003976/1-886 EGDFPPPDVW YPGGVVSRVP YPSPSCVKSE MGPWMESYSG PYGDMRLETT ENSP00000363822/1-920 ESDFTAPDVW YPGGMVSRVP YPSPTCVKSE MGPWMDSYSG PYGDMRLETA ENSBTAP00000030053/1-890 EGDFSPPDVW YPGGVVSRVP YPSPSCVKSE MGPWMENYSG PYGDMRLETT bmy_16443T0/1-650 EGDFSPPDVW YPGGVVSRVP YPSPSCVKSE MGPWMESYSG PYGDMRVIEA BACU011390/1-566 EGDFSPPDVW YPGGVVSRVP YPSPSCVKSE MGPWMESYSG PYGDMRLEA- 551 600 ENSTTRP00000003976/1-886 KDHVLPIDYY FPPQKTCLIC GDEASGCHYG ALTCGSCKVF FKRAAEGKQK ENSP00000363822/1-920 RDHVLPIDYY FPPQKTCLIC GDEASGCHYG ALTCGSCKVF FKRAAEGKQK ENSBTAP00000030053/1-890 RDHVLPIDYY FPPQKTCLIC GDEASGCHYG ALTCGSCKVF FKRAAEGKQK bmy_16443T0/1-650 GFQVV----- ---------- ---------- ---------- ---------- BACU011390/1-566 ---VL----- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000003976/1-886 YLCASRNDCT IDKFRRKNCP SCRLRKCYEA -MTLGTRKLK KLGNLKLQEE ENSP00000363822/1-920 YLCASRNDCT IDKFRRKNCP SCRLRKCYEA GMTLGARKLK KLGNLKLQEE ENSBTAP00000030053/1-890 YLCASRNDCT IDKFRRKNCP SCRLRKCYEA GMTLGARKLK KLGNLKLQEE bmy_16443T0/1-650 ---------- ---------- -SRSLDC--- ---------- -------KEV BACU011390/1-566 ---------- ---------- -SSPREC--- ---------- ---------- 651 700 ENSTTRP00000003976/1-886 GETSSATNPT EESAQKLTVS HIEGYECQPI FLNVLEAIEP GVVCAGHDNN ENSP00000363822/1-920 GEASSTTSPT EETTQKLTVS HIEGYECQPI FLNVLEAIEP GVVCAGHDNN ENSBTAP00000030053/1-890 GEASSATSPT EEPAQKLTVS HIEGYECQPI FLNVLEAIEP GVVCAGHDNN bmy_16443T0/1-650 GSGNRDSGGE EPPGGEEVLP EQAGGDATES FEDV------ ---------- BACU011390/1-566 ---------- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000003976/1-886 QPDSFAALLS SLNELGERQL VHVVKWAKAL PGFRNLHVDD QMAIIQYSWM ENSP00000363822/1-920 QPDSFAALLS SLNELGERQL VHVVKWAKAL PGFRNLHVDD QMAVIQYSWM ENSBTAP00000030053/1-890 QPDSFAALLS SLNELGERQL VHVVKWAKAL PGFRNLHVDD QMAVIQYSWM bmy_16443T0/1-650 ---------- ---------- ---------- -----GHSSD AREMLKHYYI BACU011390/1-566 ---------- ---------- ---------- ---------- -------SVL 751 800 ENSTTRP00000003976/1-886 GLMVFAMGWR SFTNVNSRML YFAPDLVFNE YRMHKSRMYS QCVRMRHLSQ ENSP00000363822/1-920 GLMVFAMGWR SFTNVNSRML YFAPDLVFNE YRMHKSRMYS QCVRMRHLSQ ENSBTAP00000030053/1-890 GLMVFAMGWR SFTNVNSRML YFAPDLVFNE YRMHKSRMYS QCVRMRHLSQ bmy_16443T0/1-650 G--------- ---------- ---------- ---------- -DVHTNDLKP BACU011390/1-566 G--------- ---------- ---------- ---------- ---RAEQAST 801 850 ENSTTRP00000003976/1-886 EFGWLQITPQ EFLCMKALLL FSIIPVDGLK NQKFFDELRM NYIKELDRII ENSP00000363822/1-920 EFGWLQITPQ EFLCMKALLL FSIIPVDGLK NQKFFDELRM NYIKELDRII ENSBTAP00000030053/1-890 EFGWLQITPQ EFLCMKALLL FSIIPVDGLK NQKFFDELRM NYIKELDRII bmy_16443T0/1-650 GSG--SKDPL KNNTCKSYWS YWIFPIVGAI LLGF------ -----LYRYY BACU011390/1-566 ERAALNLEP- ---------- ---FP--GLL AYQRFDLCAL N--------P 851 900 ENSTTRP00000003976/1-886 ACKRKNPTSC SRRFYQLTKL LDSVQPIARE LHQFTFDLLI KSHMVSVDFP ENSP00000363822/1-920 ACKRKNPTSC SRRFYQLTKL LDSVQPIARE LHQFTFDLLI KSHMVSVDFP ENSBTAP00000030053/1-890 ACKRKNPTSC SRRFYQLTKL LDSVQPIARE LHQFTFDLLI KSHMVSVDFP bmy_16443T0/1-650 TAESKSSSGN LVEVWKALPL RSEN------ ---------- ---------- BACU011390/1-566 HCVLQSPPL- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000003976/1-886 EMMAEIISVQ VPKILSGKVK PIYFHTQ ENSP00000363822/1-920 EMMAEIISVQ VPKILSGKVK PIYFHTQ ENSBTAP00000030053/1-890 EMMAEIISVQ VPKILSGKVK PIYFHTQ bmy_16443T0/1-650 ---------- ---------- ------- BACU011390/1-566 ---------- ---------- -------