KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:40:06 2014 Check: 00 .. Name: ENSTTRP00000006479/1-457 Len: 539 Check: 9944 Weight: 1.00 Name: ENSP00000402000/1-493 Len: 539 Check: 8845 Weight: 1.00 Name: bmy_03546T0/1-536 Len: 539 Check: 1784 Weight: 1.00 Name: ENSBTAP00000030168/1-379 Len: 539 Check: 1063 Weight: 1.00 // 1 50 ENSTTRP00000006479/1-457 ---------- ---------- ---------- ---------- ---------- ENSP00000402000/1-493 MRSSPALFSS RAAPQKPRKE GSQAAGLLVF SDSL------ ---------- bmy_03546T0/1-536 --ASPGDYGY QQFLSFLTIS AFLSPSRLLL SSSFILPFLP PARLPHPTPN ENSBTAP00000030168/1-379 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000006479/1-457 --IKRFLED- ADDAELNKFV KDFPGSETYH QPEAKTWVSR PQILEPRPQA ENSP00000402000/1-493 -EIKRFLEDT TDDGELSKFV KDFSGNASCH PPEAKTWASR PQVPEPRPQA bmy_03546T0/1-536 PQIKRFLED- ADDAELNKFV KDFPGSETYH QPEAKTWVSR PQILEPRPQA ENSBTAP00000030168/1-379 ---------- -MDRSLGRQG GSVP------ ---------- ----EERAEA 101 150 ENSTTRP00000006479/1-457 SDLCQDDLEF RPPSWPQPSD SQQYISASAP LSPSARPRSP WGKLDPYDSS ENSP00000402000/1-493 PDLYDDDLEF RPPSRPQSSD NQQYFCAPAP LSPSARPRSP WGKLDPYDSS bmy_03546T0/1-536 SDLCQDDLEF RPPSWPQPSD SQQYISASAP LSPSARPRSP WGKLDPYDSS ENSBTAP00000030168/1-379 G--------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000006479/1-457 EDDKEYVGFA TLPNQVHRKS VKKGFDFTLM VAGESGLGKS TLINSLFLTD ENSP00000402000/1-493 EDDKEYVGFA TLPNQVHRKS VKKGFDFTLM VAGESGLGKS TLVNSLFLTD bmy_03546T0/1-536 EDDKEYVGFA TLPNQVHRKS VKKGFDFTLM VAGESGLGKS TLVNSLFLTD ENSBTAP00000030168/1-379 -DDKEYVGFA TLPNQVHRKS VKKGFDFTLM VAGESGLGKS TLVNSLFLTD 201 250 ENSTTRP00000006479/1-457 LYRDRKLLSA EERIMQTVEI TKHAVDIEEK GVKLRLTIVD TPGFGDAVNN ENSP00000402000/1-493 LYRDRKLLGA EERIMQTVEI TKHAVDIEEK GVRLRLTIVD TPGFGDAVNN bmy_03546T0/1-536 LYRDRKLLSA EERIMQTVEI TKHAVDIEEK GVKLRLTIVD TPGFGDAVNN ENSBTAP00000030168/1-379 LYRDRKLLSA EERIMQTVEI TKHAVDIEEK GVKLRLTIVD TPGFGDAVNN 251 300 ENSTTRP00000006479/1-457 TECWKPVAEY IDQQFEQYFR DESGLNRKNI QDNRVHCCLY FISPFGHGLR ENSP00000402000/1-493 TECWKPVAEY IDQQFEQYFR DESGLNRKNI QDNRVHCCLY FISPFGHGLR bmy_03546T0/1-536 TECWKPVAEY IDQQFEQYFR DESGLNRKNI QDNRVHCCLY FISPFGHGLR ENSBTAP00000030168/1-379 TECWKPVAEY IDQQFEQYFR DESGLNRKNI QDNRVHCCLY FISPFGHGLR 301 350 ENSTTRP00000006479/1-457 PLDVEFMKAL HQRVNIVPIL AKADTLTPHG VERKKRK--- -------XXX ENSP00000402000/1-493 PLDVEFMKAL HQRVNIVPIL AKADTLTPPE VDHKKRK--- -------IRE bmy_03546T0/1-536 PLDVEFMKAL HQRVNIVPIL AKADTLTPPE VERKKRKVRE AGGGGEQIRE ENSBTAP00000030168/1-379 PLDVEFMKAL HQRVNIVPIL AKADTLTPPE VERKKRK--- -------IRE 351 400 ENSTTRP00000006479/1-457 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XESIPFAVIG SNTVVEARGR ENSP00000402000/1-493 EIEHFGIKIY QFPDCDSDED EDFKLQDQAL KESIPFAVIG SNTVVEARGR bmy_03546T0/1-536 EIEHFGIKVY QFPDCDSDED EDFKLQDQAL KESIPFAVIG SNTVVEARGR ENSBTAP00000030168/1-379 EIEHFGIKVY QFPDCDSDED EDFKSQDLAL KESIPFAVIG SNTVVEARGR 401 450 ENSTTRP00000006479/1-457 RVRGRLYPWG IVEVENPGHC DFVKLRTMLV RTHMQDLKDV TRETHYENYR ENSP00000402000/1-493 RVRGRLYPWG IVEVENPGHC DFVKLRTMLV RTHMQDLKDV TRETHYENYR bmy_03546T0/1-536 RVRGRLYPWG IVEVENPGHC DFVKLRTMLV RTHMQDLKDV TRETHYENYR ENSBTAP00000030168/1-379 RVRGRLYPWG IVEVENPGHC DFVKLRTMLV RTHMQDLKDV TRETHYENYR 451 500 ENSTTRP00000006479/1-457 AQCIQSMTRL VVKERNRN-- ---------- -------KLT RESGTDFPIP ENSP00000402000/1-493 AQCIQSMTRL VVKERNRN-- ---------- -------KLT RESGTDFPIP bmy_03546T0/1-536 AQCIQSMTRL VVKERNRKYG QRPGQSWQGW GPKHSLGKLT RESGTDFPIP ENSBTAP00000030168/1-379 AQCIQSMTRL VVKERNRN-- ---------- -------KLT LESGTDFPLP 501 550 ENSTTRP00000006479/1-457 AVPSVADPET ERLIREKDEE LRRMQEMLHK IQRQMKETH ENSP00000402000/1-493 AVPPGTDPET EKLIREKDEE LRRMQEMLHK IQKQMKENY bmy_03546T0/1-536 AVPPGTDPET ERLIREKDEE LRRMQEMLHK IQRQMKETH ENSBTAP00000030168/1-379 AVPPGTDPET ERLIREKDEE LRRMQEMLHK IQRQMKETH