KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:40:14 2014 Check: 00 .. Name: ENSBTAP00000030202/1-689 Len: 689 Check: 3334 Weight: 1.00 Name: ENSTTRP00000006303/1-685 Len: 689 Check: 7726 Weight: 1.00 Name: bmy_12158T0/1-527 Len: 689 Check: 1592 Weight: 1.00 Name: BACU016337/1-446 Len: 689 Check: 6953 Weight: 1.00 // 1 50 ENSBTAP00000030202/1-689 MMDQNHHSDK TEEAQPSEKK TTRNCCNGFK MFLAALSLSF ISKALGAVIM ENSTTRP00000006303/1-685 -MDQNQHLSK TAEAQHSEKR KTRNYCNGFK MFLAALSLSF ISKTLSAIIM bmy_12158T0/1-527 ---------- ---------- ---------- ---------- ---------- BACU016337/1-446 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000030202/1-689 KSSITQIERR FDISSSTVGL IDGSFEIGNL LVIVFVSYFG AKLHRPKLIG ENSTTRP00000006303/1-685 KGSITQIERR FDISSSTVGL IDGSFEMGNL LVILFVSYFG AKLHRPKLIG bmy_12158T0/1-527 ---------- ---------- ---------- ---------- ---------- BACU016337/1-446 ---------- ---------- ----FFLGNL LVIVFVSYFG AKLHRPKLIG 101 150 ENSBTAP00000030202/1-689 IGCIIMGTGS ILTALPHFFM GYYRYSKDTT FNPSENSTSN LPTCSINQNL ENSTTRP00000006303/1-685 IGCFVMGIGS ILTALPHFFM GYYRYSKDTP INPSENSTSS LSTCLINQNL bmy_12158T0/1-527 -----MGIGS ILTALPHFFM GYYRYSKDTP INPSENSTSS LSTCLINQNL BACU016337/1-446 IGCFTMGIGS ILTALPHFFM GYYRYSKDTP INPSENSTSS LSTCLINQNL 151 200 ENSBTAP00000030202/1-689 LPNRTSLEVV GKGLEKDSGS YMWIYVLMGN MLRGIGETPI GPLGISYIDD ENSTTRP00000006303/1-685 LLNRTSLEIV GKGWEKEYGS HMWIYILLGN MLRXXXXXXX XXXXXXXXXX bmy_12158T0/1-527 SLNRTSLEIV GKGWEKESGS HMWIYILLGN MLRGIGETPI TPLGISYIDD BACU016337/1-446 SLNRTSLEIV GK-------- ---------- ---------- ---------- 201 250 ENSBTAP00000030202/1-689 FAEEGHSSLY LGNLLAVTMI GPIIGFILVS QFSKMYVDIG YVDLSTIRIT ENSTTRP00000006303/1-685 XXXXXXXXXX XXNLFAVTMI GPIIGFLLVS LFSKMYVDVG YVDLSTIRIT bmy_12158T0/1-527 FAKEGHSSFY LGNLFAVTMI GPIIGFLLVS LFSKMYVDIG YVDLSTIRIT BACU016337/1-446 ---------- -GNLFAVTMI GPIVGFLLVS LFSKMYVDIG YVDLSTIRIT 251 300 ENSBTAP00000030202/1-689 PKDSRWVGAW WLGFLAAGLI AIISSIPFFF LPKTLNKPNK EKKASASSVS ENSTTRP00000006303/1-685 PKDSRWVGAW WLGFLVAGLI SIISSIPFFF LPPNLDKPRK EKKA---SVS bmy_12158T0/1-527 PKDSRWVGAW WLGFLVAGLM SIISSIPFFF LPKNLDKPKK EKKA---SVS BACU016337/1-446 PKDSRWVGAW WLGFLVAGLI SIISSIPFFF LPKNLDKPKK EKKA---SVS 301 350 ENSBTAP00000030202/1-689 LPMKNEEKSQ MASLTKTGQN VTDTVTGFLQ SLKSILTNPL YVLTLFLTLL ENSTTRP00000006303/1-685 LPVQNEEKSQ MAHLTKQGQN VSETVAGFFQ SLKSILTNPL YVITLVLTLL bmy_12158T0/1-527 LPVQNEEKSQ MAHLTKQGQN VSGTVAGFFQ SLKNILTNPL YVITLFLTLL BACU016337/1-446 LPVQNEEKSQ MAHLTKQGQN VSGTVAGFFQ SLKNILTNPL YVITLFLTLL 351 400 ENSBTAP00000030202/1-689 QASSHIGSIT YVFKYVEQQY GNSASETSIL LGFISIPSLA AGMFTGGFIV ENSTTRP00000006303/1-685 QASSHIGIIT YVFKYVEQQY GQSASETSIL FGFITIPTFA SGVFTGGYII bmy_12158T0/1-527 QASSHIGIIT YVFKYVEQQY GQSASETSIL FGFITIPTFA SGMFTGGYII BACU016337/1-446 QASSHIGIIT YVFKYVEQQY GQSASETSIL FGFITIPTFA SGMFTGGYII 401 450 ENSBTAP00000030202/1-689 KKFKFTLVGI AKFSLCAHMT SFLFHLINFA LICENKSVAG LTLTYDGNTP ENSTTRP00000006303/1-685 KKFKFTLVGI AKFSFCSHML SFLFHLLNFA LICENKSVAG LTLTYDGNNP bmy_12158T0/1-527 KKFKFTLVGI AKFSFCSHML SFLFHLLNFA LICENKSVAG LTLTYDG--- BACU016337/1-446 KKFKFTLVGI AKFSFCSHML SFLFHLLNFA LICENKSVAG LTLTYDG--- 451 500 ENSBTAP00000030202/1-689 VASHVNVPLS YCNSDCNCDP TQWEPLCGSN GITYMSPCLA GCTSSSGSKK ENSTTRP00000006303/1-685 VASHINVPLS YCNSDCNCDQ SQWEPLCGDN GITYISPCLA GCKSSSGSKK bmy_12158T0/1-527 ---------- ---------- ---------- ---------- ---------- BACU016337/1-446 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000030202/1-689 SIVFHNCSCV EENGFQSKNN SMKLGECPKS DDCKRKFYIY IVVQILTLFS ENSTTRP00000006303/1-685 SVMFHNCSCV EVNGFQSRNN SMKLGECPKN DQCTRKFYVY IVVQIFIFFS bmy_12158T0/1-527 -FMFHNCSCV EVNGFQSRNN SMKLGECPKN DQCTRKFYVY IVVQIFIYFS BACU016337/1-446 ---------- ---------- ---------- ---------- ---------- 551 600 ENSBTAP00000030202/1-689 AALGSTSNIM LIFKNVEPEL KSLAMGFHSL TIRTLGGIPA PIYFGALIDR ENSTTRP00000006303/1-685 SALGSTSNIM LVFKNVEPEL KSLAMGFHSL TIRTLGGIPA PIYFGALIDR bmy_12158T0/1-527 SALGSTSNIM LVFKNVEPEL KSLAMGFHSL TIRTLGGIPA PIYFGALIDR BACU016337/1-446 ---------- ----NVEPEL KSLAMGFHSL TIRTLGGIPA PIYFGALIDR 601 650 ENSBTAP00000030202/1-689 ACMKWSINNY GKQGSCRLYN SLLYGHTFFG LTTGLKFPAL VLFVVLIFAM ENSTTRP00000006303/1-685 ACMKWSVNNY GKQGSCRIYN STLYGNTFFG LTTGLKLPAL VLYVVLISVM bmy_12158T0/1-527 ACMKWSVNNY WKQGSCRIYN STLYGNTFFG LTTGLKLPAL VLYVVLISVM BACU016337/1-446 ACMKWSVNNY GKQGSCRIYN STLYGNTFFG LTTSLKLPAL VLYVVLISVM 651 700 ENSBTAP00000030202/1-689 KKKYQGKDIK ASENETKAVN EANSGPLIND AKVDHETHI ENSTTRP00000006303/1-685 KKKYQGKDIK TSENERKSVN EANLEPLSSD AAVDRETHI bmy_12158T0/1-527 KKKYQGKDIK ASENERKSVN EANLEPLSSD AGVDRETHI BACU016337/1-446 KKKYQGKDTK ASENERKSVN EANLEPLSSD AGVDRETHI