KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:40:15 2014 Check: 00 .. Name: ENSP00000227880/1-581 Len: 584 Check: 494 Weight: 1.00 Name: ENSBTAP00000030221/1-581 Len: 584 Check: 6631 Weight: 1.00 Name: bmy_16545T0/1-563 Len: 584 Check: 3603 Weight: 1.00 Name: ENSTTRP00000011857/1-579 Len: 584 Check: 7219 Weight: 1.00 // 1 50 ENSP00000227880/1-581 MPAPRAREQP RVPGERQPLL PRGARGPRRW RRAAGAAVLL VEMLERAAFF ENSBTAP00000030221/1-581 MPGPSAPRAT WESEERQPLL ARRPRRPRRW WRAAAAAVLL VEMLERAAFF bmy_16545T0/1-563 MPWPRAPVEP RESGERRPLL ERRPRGPRRW WRAAAAAVLL VEMLERAAFF ENSTTRP00000011857/1-579 MPGPRTPVEP RESGERRPLL ERRPREPRRW WRAAAAAVLL VEMLERAAFF 51 100 ENSP00000227880/1-581 GVTANLVLYL NSTNFNWTGE QATRAALVFL GASYLLAPVG GWLADVYLGR ENSBTAP00000030221/1-581 GVAGNLVLYL NSAELNWAGD QASRAALVFL GASYLLAPVG GWLADVYLGR bmy_16545T0/1-563 GVAGNLVLYL NSADFHWAGE QASRAALVFL GASYLLAPVG GWLADVYLGR ENSTTRP00000011857/1-579 GVAGNLVLYL NSADFHWAGE QASRAALVFL GASYLLAPVG GWLADVYLGR 101 150 ENSP00000227880/1-581 YRAVALSLLL YLAASGLLPA TAFPDGRSSF CGEMPASPLG PACPSAGCPR ENSBTAP00000030221/1-581 YRAIVLSLLL YLAASGLLAS TAFPDGRSSF CGEMPSAHLE PACPSPGCQY bmy_16545T0/1-563 HRAIALSLLL YLAASGLLAA TAFPDGRSSF CGEMLSLPLG PACPSPGCLH ENSTTRP00000011857/1-579 HRAIALSLLL YLAASGLLAA TAFPDGRRSF CGEMLSLPLG PACPSHGCLH 151 200 ENSP00000227880/1-581 SSPSPYCAPV LYAGLLLLGL AASSVRSNLT SFGADQVMDL GRDATRRFFN ENSBTAP00000030221/1-581 TWRATYCAPT LYAALLLLAL AASSVRSNLT SFGADQVMDL GRHASRRFFN bmy_16545T0/1-563 TSPTPYCAPI LYAVLLLLAL AASSVRSNLT SFGADQVMDL GRHANRRFFN ENSTTRP00000011857/1-579 TSPTPYCAPT LYAVLLLLAL AASSVRSNLT SFGADQVMDL GRHASRRFFN 201 250 ENSP00000227880/1-581 WFYWSINLGA VLSLLVVAFI QQNISFLLGY SIPVGCVGLA FFIFLFATPV ENSBTAP00000030221/1-581 WFYWSINVGA MLSLLVVAFI QQNISFLLGY SIVVGCVGLA FFIFLFATPS bmy_16545T0/1-563 WFYWSINVGA VLSLLVLAFI QQNINFLLGY SIIVGCVGLA FFIFLFATPS ENSTTRP00000011857/1-579 WFYWSINVGA VLSLLVLAFI QQNINFLLGY SIIVGCVGLA FFIFLFATPS 251 300 ENSP00000227880/1-581 FITKPPMGSQ VSSMLKLALQ NCCPQLWQRH SARDRQCARV LADERSPQPG ENSBTAP00000030221/1-581 FIIKPPTGSQ VSSMLKLALQ NCCPRLWHRH SARDPSSAQL LPDQRFPQPG bmy_16545T0/1-563 FITKPPTGSQ VSSVLKLALQ NCCPRQWRRH SARDPPGAQL LPDQRSPQPG ENSTTRP00000011857/1-579 FITKPPTGSQ VSSMLRLALQ NCCPRRWRRH SARDPPGTQL LPDQRSPQAG 301 350 ENSP00000227880/1-581 ASPQEDIANF QVLVKILPVM VTLVPYWMVY FQMQSTYVL- --QGLHLHIP ENSBTAP00000030221/1-581 PSPQEDIANF QVLVKILPVM VTLVPYWMVY FQMQSTYVL- --QGLHLQIP bmy_16545T0/1-563 PSPQEDIANF QVLVKILPVM VTLVPYWMVY FQVSTPALSL WRDWLPRPLT ENSTTRP00000011857/1-579 PSPQEDIANF QVLVKILPIM VTLVPYWMVY FQMQSTYVL- --QGLHLQIP 351 400 ENSP00000227880/1-581 NIFPANPANI SVALRAQGSS YTIPEAWLLL ANVVVVLILV PLKDRLIDPL ENSBTAP00000030221/1-581 NIFPNCPTNR SEALRAQGSV YKIPEAWLLL ANVVVLLILV PVKDHLLDPL bmy_16545T0/1-563 GLISHGGCSG SAALRAQGGG Y--------- ---------- --KDHLLDPL ENSTTRP00000011857/1-579 DIFPDYPANR SAALRAQGSG YKIPEAWLLL ANVVVLLILV PVKDHLLDPL 401 450 ENSP00000227880/1-581 LLRCKLLPSA LQKMALGMFF GFTSVIVAGV LEMERLHYIH HNETVSQQIG ENSBTAP00000030221/1-581 LLRCKLLPSA LQKMALGMFF GFTSVIVAGV LEMKRLEYIN HNQTVSQQIG bmy_16545T0/1-563 LLRCKLLPSA LQKMALGMFF GFTSVIVAGV LEMERLEYIS HNQTVSQQIG ENSTTRP00000011857/1-579 LLRCKLLPSA LQKMALGMFF GFTSVIVAGV LEMERLEYIS HNQTVSQQIG 451 500 ENSP00000227880/1-581 EVLYNAAPLS IWWQIPQYLL IGISEIFASI PGLEFAYSEA PRSMQGAIMG ENSBTAP00000030221/1-581 QDTYYAAPLS IWWQTPQYLL IGISEIFASI AGLEFAYSEA PRSMQGALMG bmy_16545T0/1-563 QNTYYAAPLS IWWQTPQYLL IGISEIFASI PGLEFAYSEA PRSMQGAMMG ENSTTRP00000011857/1-579 QNTYYAAPLS IWWQTPQYLL IGISEIFASI PGLEFAYSEA PRSMQGAMMG 501 550 ENSP00000227880/1-581 IFFCLSGVGS LLGSSLVALL SLPGGWLHCP KDFGNINNCR MDLYFFLLAG ENSBTAP00000030221/1-581 IFFCLSGVGS LLGSSLVALL SLPGGWLYCP EDTGNINKCR MDLYFFLLAG bmy_16545T0/1-563 IFFCLSGVGS LLGSSLVALL SLPGGWLHCP EDFGNINKCR MDLYFFLLAG ENSTTRP00000011857/1-579 IFFCLSGVGS LLGSSLVALL SLPGGWLHCP EDSGNINKCR MDLYFFLLAG 551 600 ENSP00000227880/1-581 IQAVTALLFV WIAGRYERAS QGPASHSRFS RDRG ENSBTAP00000030221/1-581 IQAAAALLFI IIADRYERAA KGPAPQSCPR RDSG bmy_16545T0/1-563 IQAATVLLYI GIAGRYERVA QGPASQSCPR RDSG ENSTTRP00000011857/1-579 IQAATALLYI GIAGRYERVA QGPASQSCPR RD--