KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:40:16 2014 Check: 00 .. Name: bmy_04176T0/1-576 Len: 763 Check: 775 Weight: 1.00 Name: ENSTTRP00000012374/1-742 Len: 763 Check: 5075 Weight: 1.00 Name: BACU016351/1-347 Len: 763 Check: 5450 Weight: 1.00 Name: ENSBTAP00000030245/1-728 Len: 763 Check: 1955 Weight: 1.00 Name: ENSP00000398273/1-763 Len: 763 Check: 8982 Weight: 1.00 // 1 50 bmy_04176T0/1-576 MLTDPDLPQE FERMSSKRPA SPYGEADGEV AMVTSRQKVE EEESDGLPAF ENSTTRP00000012374/1-742 MLTDPDLPQE FERMSSKRPA SPYGEADGEV AMVTSRQKVE EEESDGLPAF BACU016351/1-347 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030245/1-728 MLTDPDLPQE FERMSSKRPA SPYGEADGEV AMVTSRQKVE EEESDGLPAF ENSP00000398273/1-763 MLTDPDLPQE FERMSSKRPA SPYGEADGEV AMVTSRQKVE EEESDGLPAF 51 100 bmy_04176T0/1-576 HLPLH----- ---------- ---------- ---------- EVDGNKVMSS ENSTTRP00000012374/1-742 HLPLHVSFPN KPHSEEFQPV SLLTQETCGH RTPTSQHNTM EVDGNKVMSS BACU016351/1-347 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030245/1-728 HLPLH----- ---------- ---------- ---------- EVDGNKVMSS ENSP00000398273/1-763 HLPLHVSFPN KPHSEEFQPV SLLTQETCGH RTPTSQHNTM EVDGNKVMSS 101 150 bmy_04176T0/1-576 FAPHNSSTSP QKAEEGGRQS GESLSSTALG TPERRKGSLA DVVDTLKQRK ENSTTRP00000012374/1-742 FAPHNSSTSP QKAEEGGRQS GESLSSTALG TPERRKGSLA DVVDTLKQRK BACU016351/1-347 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030245/1-728 FAPHNSSTSP QKAEEGGRQS GESLSSTTLG TPERRKGSLA DVVDTLKQRK ENSP00000398273/1-763 FAPHNSSTSP QKAEEGGRQS GESLSSTALG TPERRKGSLA DVVDTLKQRK 151 200 bmy_04176T0/1-576 MEELIKNEPE ETPSIEKLLS KDWKDKLLAM GSGNFGEIKG TPESLAEKER ENSTTRP00000012374/1-742 MEELIKNEPE ETPSIEKLLS KDWKDKLLAM GSGNFGEIKG TPESLAEKER BACU016351/1-347 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030245/1-728 MEELIKNEPE ETPSIEKLLS KDWKDKLLAM GSGNFGEIKG TPESLAEKER ENSP00000398273/1-763 MEELIKNEPE ETPSIEKLLS KDWKDKLLAM GSGNFGEIKG TPESLAEKER 201 250 bmy_04176T0/1-576 QLMGMINQLT SLREQLLAAH DEQKKLAASQ IEKQRQQMEL AKQQQEQIAR ENSTTRP00000012374/1-742 QLMGMINQLT SLREQLLAAH DEQKKLAASQ IEKQRQQMEL AKQQQEQIAR BACU016351/1-347 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030245/1-728 QLMGMINQLT SLREQLLAAH DEQKKLAASQ IEKQRQQMEL AKQQQEQIAR ENSP00000398273/1-763 QLMGMINQLT SLREQLLAAH DEQKKLAASQ IEKQRQQMEL AKQQQEQIAR 251 300 bmy_04176T0/1-576 QQQQLLQQQH KINLLQQQIQ VRNH------ ------EKNG G--------- ENSTTRP00000012374/1-742 QQQQLLQQQH KINLLQQQIQ -QGQLPPLMI SVFPPDQRXM A--------- BACU016351/1-347 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030245/1-728 QQQQLLQQQH KINLLQQQIQ VQGQLPPLMI PVFPPDQRTL AAAAQQGFLL ENSP00000398273/1-763 QQQQLLQQQH KINLLQQQIQ VQGQLPPLMI PVFPPDQRTL AAAAQQGFLL 301 350 bmy_04176T0/1-576 ---------- -DPYPVQLIP TTMAAAAAAT PGLGPLQLQ- ---------- ENSTTRP00000012374/1-742 ---------- -DPYPVQLIP TTMAAAAAAT PGLGPLQLQQ LYAAQLAAMQ BACU016351/1-347 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030245/1-728 PPGFSYKAGC SDPYPVQLIP TTMAAAAAAT PGLGPLQLQQ LYAAQLAAMQ ENSP00000398273/1-763 PPGFSYKAGC SDPYPVQLIP TTMAAAAAAT PGLGPLQLQQ LYAAQLAAMQ 351 400 bmy_04176T0/1-576 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012374/1-742 VSPGGKLPGI PQGNLGAAVS PTSIHTDKST NSPPPKSKDE VAQPLNLSAK BACU016351/1-347 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030245/1-728 VSPGGKLPGV PQGNLGAAVS PTSIHTDKST NSPPPKSKDE VAQPLNLSAK ENSP00000398273/1-763 VSPGGKLPGI PQGNLGAAVS PTSIHTDKST NSPPPKSKDE VAQPLNLSAK 401 450 bmy_04176T0/1-576 ---------- --IEVERLVL YIQSA----- ---------- ---------- ENSTTRP00000012374/1-742 PKTSDGKSPT SPTSPHMPAL RINSGAGPLK ASVPASLASP SARVSTIGYL BACU016351/1-347 ---------- ------MPAL RINSGAGPLK ASVPASLASP SARVSTIGYL ENSBTAP00000030245/1-728 PKTSDGKSPT SPTSPHMPAL RINSGAGPLK ASVPASLASP SARVSTIGYL ENSP00000398273/1-763 PKTSDGKSPT SPTSPHMPAL RINSGAGPLK ASVPAALASP SARVSTIGYL 451 500 bmy_04176T0/1-576 -EHEMTVTNV DLMWMFNNEK KCVSPSISYK WQYFNRLKNN NAR------- ENSTTRP00000012374/1-742 NDHDAVTKAI QEARQMKEQL RREQQVLDGK VAVVNSLGLN NCRAEKEKTT BACU016351/1-347 NDHDAVTKAI QEARQMKEQL RREQQVLDGK VAVVNSLGLN NCRAEKEKTT ENSBTAP00000030245/1-728 NDHDAVTKAI QEARQMKEQL RREQQVLDGK VAVVNSLGLN NCRTEKEKTT ENSP00000398273/1-763 NDHDAVTKAI QEARQMKEQL RREQQVLDGK VAVVNSLGLN NCRTEKEKTT 501 550 bmy_04176T0/1-576 -----KGIAI SFNTNVKQCS LFL------- --GSAGVSES RIYRESRGRG ENSTTRP00000012374/1-742 LESLTQQLAV KQNEEGKFSH AMMDFNMSGD SDGSAGVSES RIYRESRGRG BACU016351/1-347 LESLTQQLAV KQNEEGKFSH AMMDFNMSGD SDGSAGVSES RIYRESRGRG ENSBTAP00000030245/1-728 LESLTQQLAV KQNEEGKFSH AMMDFNMSGD SDGSAGVSES RIYRESRGRG ENSP00000398273/1-763 LESLTQQLAV KQNEEGKFSH AMMDFNLSGD SDGSAGVSES RIYRESRGRG 551 600 bmy_04176T0/1-576 SNEPHIKRPM NAFMVWAKDE RRKILQAFPD MHNSNISKIL GSRWKAMTNL ENSTTRP00000012374/1-742 SNEPHIKRPM NAFMVWAKDE RRKILQAFPD MHNSNISKIL GSRWKAMTNL BACU016351/1-347 SNEPHIKRPM NAFMVWAKDE RRKILQAFPD MHNSNISKIL GSRWKAMTNL ENSBTAP00000030245/1-728 SNEPHIKRPM NAFMVWAKDE RRKILQAFPD MHNSNISKIL GSRWKAMTNL ENSP00000398273/1-763 SNEPHIKRPM NAFMVWAKDE RRKILQAFPD MHNSNISKIL GSRWKAMTNL 601 650 bmy_04176T0/1-576 EKQPYYEEQA RLSKQHLEKY PDYKYKPRPK RTCLVDGKKL RIGEYKAIMR ENSTTRP00000012374/1-742 EKQPYYEEQA RLSKQHLEKY PDYKYKPRPK RTCLVDGKKL RIGEYKAIMR BACU016351/1-347 EKQPYYEEQA RLSKQHLEKY PDYKYKPRPK RTCLVDGKKL RIGEYKAIMR ENSBTAP00000030245/1-728 EKQPYYEEQA RLSKQHLEKY PDYKYKPRPK RTCLVDGKKL RIGEYKAIMR ENSP00000398273/1-763 EKQPYYEEQA RLSKQHLEKY PDYKYKPRPK RTCLVDGKKL RIGEYKAIMR 651 700 bmy_04176T0/1-576 NRRQEMRQYF NVGQQAQIPI ATAGVVYPGA IAMAGMPSPH LPSEHSSVSS ENSTTRP00000012374/1-742 NRRQEMRQYF NVGQQAQIPI ATAGVVYPGA IAMAGMPSPH LPSEHSSVSS BACU016351/1-347 NRRQEMRQYF NVGQQAQIPI ATAGVVYPGA IAMAGMPSPH LPSEHSSVSS ENSBTAP00000030245/1-728 NRRQEMRQYF NVGQQAQIPI ATAGVVYPGA IAMAGMPSPH LPSEHSSVSS ENSP00000398273/1-763 NRRQEMRQYF NVGQQAQIPI ATAGVVYPGA IAMAGMPSPH LPSEHSSVSS 701 750 bmy_04176T0/1-576 SPEPGMPVIQ STYGVKGEEP HIKEEIQAED INGEIYDEYE EEEDDPDVDY ENSTTRP00000012374/1-742 SPEPGMPVIQ STYGVKGEEP HIKEEIQAED INGEIYDEYE EEEDDPDVDY BACU016351/1-347 SPEPGMPVIQ STYGVKGEEP HIKEEIQAED INGEIYDEYE EEEDDPDVDY ENSBTAP00000030245/1-728 SPEPGMPVIQ STYGVKGEEP HIKEEIQAED INGEIYDEYD EEEDDPDVDY ENSP00000398273/1-763 SPEPGMPVIQ STYGVKGEEP HIKEEIQAED INGEIYDEYD EEEDDPDVDY 751 800 bmy_04176T0/1-576 GSDSENHIAG QAN ENSTTRP00000012374/1-742 GSDSENHIAG QAN BACU016351/1-347 GSDSENHIAG QAN ENSBTAP00000030245/1-728 GSDSENHIAG QAN ENSP00000398273/1-763 GSDSENHIAG QAN