KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:40:17 2014 Check: 00 .. Name: ENSP00000263593/1-523 Len: 541 Check: 3522 Weight: 1.00 Name: ENSBTAP00000030276/1-533 Len: 541 Check: 4820 Weight: 1.00 Name: ENSTTRP00000012524/1-522 Len: 541 Check: 7020 Weight: 1.00 Name: bmy_20176T0/1-482 Len: 541 Check: 5252 Weight: 1.00 Name: BACU010215/1-521 Len: 541 Check: 6717 Weight: 1.00 // 1 50 ENSP00000263593/1-523 MVAPGLVLGL VLPLILWADR SAG------- -----IGFRF ASYINNDMVL ENSBTAP00000030276/1-533 MIASEFVLGL VLRLFLQAHV SAGGFGLFSS DKVGYVGFRF ASYIDDYMVL ENSTTRP00000012524/1-522 MVAPGFVFGL VLPLLLRADA SAD------- -----VGFRF ASYIDNHMVL bmy_20176T0/1-482 MVAPGFVFGL VLPLLLRADA SAD------- -----VGFRF ASYIDNYMVL BACU010215/1-521 MVAPGFVFGL VLPLLLRADA SAD------- -----VGFRF ASYIDDYMVL 51 100 ENSP00000263593/1-523 QKEPAGAVIW GFGTPGATVT VTLRQGQETI MKKVTSVKAH SDTWMVVLDP ENSBTAP00000030276/1-533 QREPAGAVIW GYGTPRATVT VTLCRDQEPI MKKGTRVK-D SNTWTVVLDP ENSTTRP00000012524/1-522 QKEPAGAVIW GYGVSGATVT VTLCQDQETI MKKVTSVKAH SNSWMVVLDP bmy_20176T0/1-482 QQEPAGAVIW GYGVSGATVA VTLCQDQETI MKKVTSVKAH SNSWMVVLDP BACU010215/1-521 QKEPAGAVIW GYGVSRATVT VTLCQDQETI MKKVTSVKAH SDSWMVVLDP 101 150 ENSP00000263593/1-523 MKPGGPFEVM AQQTLEKINF TLRVHDVLFG DVWLCSGQSN MQMTVLQIFN ENSBTAP00000030276/1-533 MKPGGPYEVM AQQTLGRINF TLRVHDVLFG DVWLCSGQSN MKMTVSQVFN ENSTTRP00000012524/1-522 VKPGGPYEVM AQQTLGRKNF TLRIHDVLFG DVWLCSGQSN MQMTVSQIFN bmy_20176T0/1-482 VKPGGPYEVM AQQILGRKNF TLRIHDVLFG DVWLCSGQSN MQMTVSQIFN BACU010215/1-521 VKPGGPYEVM AQQILGRKNF TLRIHGVLFG DVWLCSGQSN MQMTVSQIFN 151 200 ENSP00000263593/1-523 ATRELSNTAA YQSVRILSVS PIQAEQELED LVAVDLQWSK PTSENLGHGY ENSBTAP00000030276/1-533 ATGELSNTAA YQSVRILSVS STQAQQELED LAKVDLRWSK PTSKNLGHGN ENSTTRP00000012524/1-522 ATSELSNTAA YQSVHILSVS LTQAQQELED LAKVDLQWSK PTLENLGHGN bmy_20176T0/1-482 ATSELSNTAA YQSVHILSVS LNQAQQELED LAEVDLRWSK PTLENLGHGN BACU010215/1-521 ATSELSNTAA YQSVHILSVS LNQAQQELED LAEVDLRWSK PTLENLGHGN 201 250 ENSP00000263593/1-523 FKYMSAVCWL FGRHLYDTLQ YPIGLIASSW GGTPIEAWSS GRSLKACGVP ENSBTAP00000030276/1-533 FTYMSAVCWL FGRFLYDTLR YPVGLLSSSW SGTPIEAWSS RRSLEACGVP ENSTTRP00000012524/1-522 FTYMSAVCWL FGRYLHDTLR YPVGLISSSW AGTPIEAWSS ERSLKACGVP bmy_20176T0/1-482 FTYMSAVCWL FGRYLHDTLR YPVGLLSSSW AGTPIEAWSS GRSLKACGVP BACU010215/1-521 FTYMSAVCWL FGRYLHDTLR YPVGLLSSSW AGTPIEAWSS GRSLKACGVP 251 300 ENSP00000263593/1-523 KQGSIPYDSV TGPSKHSVLW NAMIHPLCNM TLKGVVWYQG ESNINYNTDL ENSBTAP00000030276/1-533 RSGSMPSDLK IGPSAHSVLW NAMIHPLRNM TLKGVIWYQG ESNVNFNRDL ENSTTRP00000012524/1-522 RQGFMPSDLE TGPSEYSVLW NAMIHPLRNM TLKGVIWYQG ESNVNFNRDL bmy_20176T0/1-482 RQG------- ---------- ---------- ---------- --------DL BACU010215/1-521 RQGSMPSDLE TGPSEYSVLW NAMIHPLRNM TLKGVIWYQG ESNVNVNRDL 301 350 ENSP00000263593/1-523 YNCTFPALIE DWRETFHRGS QGQTERFFPF GLVQLSSDLS KKSSDDGFPQ ENSBTAP00000030276/1-533 YNCTFPLLID DWRQTFHDGS QGQTERLFPF GFVQLSSYLS GEALHDGLPQ ENSTTRP00000012524/1-522 YNCTFPALIE DWRQTFHDGS QGQTERFFPF GFVQLSSYLS GATPNDGLPE bmy_20176T0/1-482 YNCTFPALVE DWRQTFHDGS QGQTERFFPF GFVQLSSYLS GATPNDGLPQ BACU010215/1-521 YNCTFPALVE DWRQTFHDGS QGQTERFFPF GFVQLSSYLS GATPNDGLPQ 351 400 ENSP00000263593/1-523 IRWHQTADFG YVPNPKMPNT FMAVAMDLCD RDSPFGSIHP RDKQTVAYRL ENSBTAP00000030276/1-533 IRWHQTADFG YVPNQRMPNT FMAAAVDLCD RNSPFGSIHP RDKQTVAYRL ENSTTRP00000012524/1-522 IRWHQTADFG YVPNLRMPNT FMAVAVDLCD RNSPFGSTHP RDKQTVAYRL bmy_20176T0/1-482 IRWHQTADFG YVPNLRMPNT FMAVAMDLCD RNSPFGSTHP RDKQTVAYRL BACU010215/1-521 IRWHQTADFG YVPNLRMPNT FMAVAMDLCD RNSPFGSTHP RDKQTLAYRL 401 450 ENSP00000263593/1-523 HLGARALAYG EKNLTFEGPL PEKIELLAHK GLLNLTYYQQ IQVQKKDNKI ENSBTAP00000030276/1-533 HLGARALAYG EK-LIFQGPL PQKIELLADT GLLNLTYSQP IKVQRRDDKI ENSTTRP00000012524/1-522 HLGARAVAYG AK-LTFQGPL PQKIELLGDM GLLNLTYSQP IQVQRHNNKI bmy_20176T0/1-482 HLGARAVAYG AK-LTFQGPL PQKIELLGDM GLLNLTYSQP IQVQRHN-KI BACU010215/1-521 HLGARAVAYG AK-LTFQGPL PQKIELLGDM GLLNLTYSQP IQVQRHD-KI 451 500 ENSP00000263593/1-523 FE------IS CCSDHRCKWL PASMNTVSTQ SLTLAIDSCH GTVVALRYAW ENSBTAP00000030276/1-533 FE------VS CCSDHQCKWL PAPMDTFSTQ TLALNITSCH DTPAALRYAW ENSTTRP00000012524/1-522 FE------IS CCSDHQCKWL PAPMDTFSAQ TLALNVKSCH NSLVAVRYAW bmy_20176T0/1-482 FEVRTAETIS CCSDHQCKWL PAPMDTFSAQ TLALNVKSCR DSLAAVRYAW BACU010215/1-521 FE------IS CCSDHQCKWL PAPMDTFSAQ TLALNVKSCR DSLAAVRYAW 501 550 ENSP00000263593/1-523 TTWPCEYKQC PLYHPSSALP APPFIAFITD QGPGHQSNVA K ENSBTAP00000030276/1-533 TPWPCEYKQC PLYHLTSTLP APPFIAPITN PSSGYHSRTA K ENSTTRP00000012524/1-522 TTWPCEYKQC PLYHPTSALP APPFTAFITN QIPGYRSKVA K bmy_20176T0/1-482 TAWPCEYKQC PLYHPTSALP APPFTAFITN QIPGYRSKVA K BACU010215/1-521 TAWPCEYKQC PLYHPTSALP APPFTAFITN QIPGYRSKVA K