KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:40:17 2014 Check: 00 .. Name: ENSP00000318684/1-327 Len: 382 Check: 1272 Weight: 1.00 Name: ENSBTAP00000030277/1-328 Len: 382 Check: 2649 Weight: 1.00 Name: bmy_20179T0/1-382 Len: 382 Check: 8300 Weight: 1.00 Name: BACU010213/1-287 Len: 382 Check: 8572 Weight: 1.00 Name: ENSTTRP00000012539/1-327 Len: 382 Check: 9999 Weight: 1.00 // 1 50 ENSP00000318684/1-327 MAELPGPFLC GALLGFLCLS --GLAVEVKV PTEPLSTPLG KTAELTCTYS ENSBTAP00000030277/1-328 MAWLPGCFLC RVLLVWVGLS APGLAVEVKV PSEPLSAPVG KTAELTCSYS bmy_20179T0/1-382 MAWLPGPFLC GALLGWVCLS APGLAVEVKV PTEPLSAPVG KTAELTCSYS BACU010213/1-287 MAWLPGPFLC GALLAWVCLS APGLAVEVKV PTEPLSAPVG KTAELTCSYS ENSTTRP00000012539/1-327 MAWLQGPFLC GALLGWVCLS --GLAVEVKV PTEPLSAPVG KTAELTCSYS 51 100 ENSP00000318684/1-327 TSVGDSFALE WSFVQPGKPI SESHPILYFT NGHLYPTGSK SKRVSLLQNP ENSBTAP00000030277/1-328 TSVGDNFALE WSFVQPGKPV SVSQPILYFT NGQLYPTGSK AERASLLQNP bmy_20179T0/1-382 TSVGDNFALE WSFVQPGRPV SSSQPILYFT NGQLYPTGSK AERASLLQNP BACU010213/1-287 TSVGDNFALE WSFVQPGRPV SSSQPILYFT NGQLYPTGSK AERASLLQNP ENSTTRP00000012539/1-327 TSVGDNFALE WSFVQPGRPV SSSQPILYFT NGQLYPTGSK AERASLLQNP 101 150 ENSP00000318684/1-327 PTVGVATLKL TDVHPSDTGT YLCQVNNPPD FYTNGLGLIN LTVL------ ENSBTAP00000030277/1-328 PTGGVATLKL TDVRPSDTGT YLCQINNPPD FYTNGLGLIN LTVL------ bmy_20179T0/1-382 PTGGVATLKL TDVHPSDTGT YLCHVNNPPD FYTNGLGLIN LTVLGEAGWG BACU010213/1-287 PTGGVATLKL TDVHPSDTGT YLCHVNNPPD FYTNGLGLIN LTVL------ ENSTTRP00000012539/1-327 PTGGVATLKL TDVHPSDTGT YLCHVNNPPD FYSNGLGLIN LTVL------ 151 200 ENSP00000318684/1-327 ---------- ---------- ---------- ------VPPS NPL------- ENSBTAP00000030277/1-328 ---------- ---------- ---------- ------VPPS RPA------- bmy_20179T0/1-382 PTSHPHNLKD CTGPAKSSPI LISSPRAQLH WGPRRKMPPS QSHPILPLLH BACU010213/1-287 ---------- ---------- ---------- ------VPPN SP-------- ENSTTRP00000012539/1-327 ---------- ---------- ---------- ------VPPN SPS------- 201 250 ENSP00000318684/1-327 ----CSQSGQ TSVGGSTALR CSSSEGAPKP VYNWVRLGTF PTPSPGSMVQ ENSBTAP00000030277/1-328 ----CSQSGQ TFVGGSAALR CSSSMGAPKP VYNWIRLGAS PTPSPGSMVQ bmy_20179T0/1-382 PPQRMPPPSV ASEGSRESPS HSSSEGAPRP VYNWIRLGSS PTPPPGSMVQ BACU010213/1-287 -----SQIRQ ISVGGSAALR FSSSEGAPRP VYNWIRLGSS PTPPPGSMVQ ENSTTRP00000012539/1-327 ----CSQSGQ TSVGGSTALR CSSSEGAPRP VYNWIRLGSS PTPPPGSMVQ 251 300 ENSP00000318684/1-327 DEVSGQLILT NLSLTSSGTY RCVATNQMGS ASCELTLSVT EPSQGRVAGA ENSBTAP00000030277/1-328 DEVSGQLILT NLSLASSGTY RCVATNQMGS ASCELTLSVT DPSKGRVAGT bmy_20179T0/1-382 DEVSGRLILT NLSLVSSGTY RCVATNQMGS ASCELTLSVT DPSKGRVAGA BACU010213/1-287 DEVSGRLILT NLSLASSGTY RCVATNQMGS ASCELTLSVT DPSKGRVAGA ENSTTRP00000012539/1-327 DEVSGRLILT NLSLASSGTY RCVATNQMGS ASCELTLSVT EPSKGRVAGA 301 350 ENSP00000318684/1-327 LIGVLLGVLL LSVAAFCLVR FQKERGKKPK ETYGGSDLRE DAIAPGISEH ENSBTAP00000030277/1-328 VIGVLLGLLF LSVAVFCLIR FQKERRKRPK ETFGGSDLQE DAMAPGVSEQ bmy_20179T0/1-382 VIGVLLGVLF LSVAVFCLIR FQKDRRKKPK ETYGGSDLRE DATAPGISEQ BACU010213/1-287 VIGVLLGVLF LSVAVFCLIR FQKDRRKKPK ETYRGSDLRE ---------- ENSTTRP00000012539/1-327 VIGVLLGVLF LSVAVFCLIR FQKDRRKKPK ETYGGSDLRE DATAPGISEQ 351 400 ENSP00000318684/1-327 TCMRADSSKG FLERPSSAST VTTTKSKLPM VV ENSBTAP00000030277/1-328 PLEREDSSNG LLERPSSAST V-TIKSKLPM VV bmy_20179T0/1-382 TSVRADSNNG LLERPPSAST VTTTKSKLPM VV BACU010213/1-287 ---------- FL-------- ---------- -- ENSTTRP00000012539/1-327 TSVRADSNSG LLERPSSAST VTTTKSKLPM LV