KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:40:17 2014 Check: 00 ..
Name: ENSP00000318684/1-327 Len: 382 Check: 1272 Weight: 1.00
Name: ENSBTAP00000030277/1-328 Len: 382 Check: 2649 Weight: 1.00
Name: bmy_20179T0/1-382 Len: 382 Check: 8300 Weight: 1.00
Name: BACU010213/1-287 Len: 382 Check: 8572 Weight: 1.00
Name: ENSTTRP00000012539/1-327 Len: 382 Check: 9999 Weight: 1.00
//
1 50
ENSP00000318684/1-327 MAELPGPFLC GALLGFLCLS --GLAVEVKV PTEPLSTPLG KTAELTCTYS
ENSBTAP00000030277/1-328 MAWLPGCFLC RVLLVWVGLS APGLAVEVKV PSEPLSAPVG KTAELTCSYS
bmy_20179T0/1-382 MAWLPGPFLC GALLGWVCLS APGLAVEVKV PTEPLSAPVG KTAELTCSYS
BACU010213/1-287 MAWLPGPFLC GALLAWVCLS APGLAVEVKV PTEPLSAPVG KTAELTCSYS
ENSTTRP00000012539/1-327 MAWLQGPFLC GALLGWVCLS --GLAVEVKV PTEPLSAPVG KTAELTCSYS
51 100
ENSP00000318684/1-327 TSVGDSFALE WSFVQPGKPI SESHPILYFT NGHLYPTGSK SKRVSLLQNP
ENSBTAP00000030277/1-328 TSVGDNFALE WSFVQPGKPV SVSQPILYFT NGQLYPTGSK AERASLLQNP
bmy_20179T0/1-382 TSVGDNFALE WSFVQPGRPV SSSQPILYFT NGQLYPTGSK AERASLLQNP
BACU010213/1-287 TSVGDNFALE WSFVQPGRPV SSSQPILYFT NGQLYPTGSK AERASLLQNP
ENSTTRP00000012539/1-327 TSVGDNFALE WSFVQPGRPV SSSQPILYFT NGQLYPTGSK AERASLLQNP
101 150
ENSP00000318684/1-327 PTVGVATLKL TDVHPSDTGT YLCQVNNPPD FYTNGLGLIN LTVL------
ENSBTAP00000030277/1-328 PTGGVATLKL TDVRPSDTGT YLCQINNPPD FYTNGLGLIN LTVL------
bmy_20179T0/1-382 PTGGVATLKL TDVHPSDTGT YLCHVNNPPD FYTNGLGLIN LTVLGEAGWG
BACU010213/1-287 PTGGVATLKL TDVHPSDTGT YLCHVNNPPD FYTNGLGLIN LTVL------
ENSTTRP00000012539/1-327 PTGGVATLKL TDVHPSDTGT YLCHVNNPPD FYSNGLGLIN LTVL------
151 200
ENSP00000318684/1-327 ---------- ---------- ---------- ------VPPS NPL-------
ENSBTAP00000030277/1-328 ---------- ---------- ---------- ------VPPS RPA-------
bmy_20179T0/1-382 PTSHPHNLKD CTGPAKSSPI LISSPRAQLH WGPRRKMPPS QSHPILPLLH
BACU010213/1-287 ---------- ---------- ---------- ------VPPN SP--------
ENSTTRP00000012539/1-327 ---------- ---------- ---------- ------VPPN SPS-------
201 250
ENSP00000318684/1-327 ----CSQSGQ TSVGGSTALR CSSSEGAPKP VYNWVRLGTF PTPSPGSMVQ
ENSBTAP00000030277/1-328 ----CSQSGQ TFVGGSAALR CSSSMGAPKP VYNWIRLGAS PTPSPGSMVQ
bmy_20179T0/1-382 PPQRMPPPSV ASEGSRESPS HSSSEGAPRP VYNWIRLGSS PTPPPGSMVQ
BACU010213/1-287 -----SQIRQ ISVGGSAALR FSSSEGAPRP VYNWIRLGSS PTPPPGSMVQ
ENSTTRP00000012539/1-327 ----CSQSGQ TSVGGSTALR CSSSEGAPRP VYNWIRLGSS PTPPPGSMVQ
251 300
ENSP00000318684/1-327 DEVSGQLILT NLSLTSSGTY RCVATNQMGS ASCELTLSVT EPSQGRVAGA
ENSBTAP00000030277/1-328 DEVSGQLILT NLSLASSGTY RCVATNQMGS ASCELTLSVT DPSKGRVAGT
bmy_20179T0/1-382 DEVSGRLILT NLSLVSSGTY RCVATNQMGS ASCELTLSVT DPSKGRVAGA
BACU010213/1-287 DEVSGRLILT NLSLASSGTY RCVATNQMGS ASCELTLSVT DPSKGRVAGA
ENSTTRP00000012539/1-327 DEVSGRLILT NLSLASSGTY RCVATNQMGS ASCELTLSVT EPSKGRVAGA
301 350
ENSP00000318684/1-327 LIGVLLGVLL LSVAAFCLVR FQKERGKKPK ETYGGSDLRE DAIAPGISEH
ENSBTAP00000030277/1-328 VIGVLLGLLF LSVAVFCLIR FQKERRKRPK ETFGGSDLQE DAMAPGVSEQ
bmy_20179T0/1-382 VIGVLLGVLF LSVAVFCLIR FQKDRRKKPK ETYGGSDLRE DATAPGISEQ
BACU010213/1-287 VIGVLLGVLF LSVAVFCLIR FQKDRRKKPK ETYRGSDLRE ----------
ENSTTRP00000012539/1-327 VIGVLLGVLF LSVAVFCLIR FQKDRRKKPK ETYGGSDLRE DATAPGISEQ
351 400
ENSP00000318684/1-327 TCMRADSSKG FLERPSSAST VTTTKSKLPM VV
ENSBTAP00000030277/1-328 PLEREDSSNG LLERPSSAST V-TIKSKLPM VV
bmy_20179T0/1-382 TSVRADSNNG LLERPPSAST VTTTKSKLPM VV
BACU010213/1-287 ---------- FL-------- ---------- --
ENSTTRP00000012539/1-327 TSVRADSNSG LLERPSSAST VTTTKSKLPM LV