KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:40:22 2014 Check: 00 .. Name: ENSP00000305533/1-903 Len: 904 Check: 9828 Weight: 1.00 Name: ENSBTAP00000030380/1-903 Len: 904 Check: 9898 Weight: 1.00 Name: ENSTTRP00000007254/1-903 Len: 904 Check: 5482 Weight: 1.00 Name: bmy_20586T0/1-844 Len: 904 Check: 3582 Weight: 1.00 Name: BACU002013/1-570 Len: 904 Check: 4927 Weight: 1.00 // 1 50 ENSP00000305533/1-903 MTRSCSAVGC STRDTVLSRE RGLSFHQFPT DTIQRSKWIR AVNRVDPRSK ENSBTAP00000030380/1-903 MTRSCSAVGC STRDTVLSRE RGLSFHQFPT DTIQRSKWIR AVNRMDPRSK ENSTTRP00000007254/1-903 MTRSCSAVGC STRDTVLSRE RGLSFHQFPT DTIQRSKWIR AVNRMDPRSK bmy_20586T0/1-844 MTRSCSAVGC STRDTVLSRE RGLSFHQFPT DTIQRSKWIR AVNRMDPRSK BACU002013/1-570 MTRSCSAVGC STRDTVLSRE RGLSFHQFPT DTIQRSKWIR AVNRMDPRSK 51 100 ENSP00000305533/1-903 KIWIPGPGAI LCSKHFQESD FESYGIRRKL KKGAVPSVSL YKIPQGVHLK ENSBTAP00000030380/1-903 KIWIPGPGAM LCSKHFQESD FESYGIRRKL KKGAVPSVSL YKVLQGVHLK ENSTTRP00000007254/1-903 KIWIPGPGAM LCSKHFQESD FESYGIRRKL KKGAVPSVSL YKVLQGVHLK bmy_20586T0/1-844 KIWIPGPGAM LCSKHFQESD FESYGIRRKL KKGAVPSVSL YKVLQGVHLK BACU002013/1-570 KIWIPGPGAM LCSKHFQESD FESYGIRRKL KKGAVPSVSL YKVLQGVHLK 101 150 ENSP00000305533/1-903 GKARQKILKQ PLPDNSQEVA TEDHNYSLKT PLTIGAEKLA EVQQMLQVSK ENSBTAP00000030380/1-903 GKARQKILKQ PLPDNSQEVA TEDHNYSLKR PLTIGAEKLA EVQQMLQVSK ENSTTRP00000007254/1-903 GKARQKILKQ PLPDNSQEVA TEDHNYSLKR PLTIGAEKLA EVQQMLQVSR bmy_20586T0/1-844 GKARQKILKQ PLPENSQEVA TEDHNYSLKR PLTIGAEKLA EVQQMLQVSK BACU002013/1-570 GKARQKILKQ PLPDNSQEVA TEDHNYSLKR PLTIGAEKLA EVQQMLQVSK 151 200 ENSP00000305533/1-903 KRLISVKNYR MIKKRKGLRL IDALVEEKLL SEETECLLRA QFSDFKWELY ENSBTAP00000030380/1-903 KRLASAKNYR MIKKRKGLRL IDALIEEKLL TEETECLLRA QFSDFKWELY ENSTTRP00000007254/1-903 KRLASAKNYR MIKKRKGLRL IDALVEEKLL SEETECLLRA QFSDFKWELC bmy_20586T0/1-844 KRLASAKNYR MIKKRKGLRL IDALVEEKLL SEETE----- ---------- BACU002013/1-570 KRLASAKNYR MIKKRKGLRL IDALVEEKLL SEETECLLRA QFSDFKWELY 201 250 ENSP00000305533/1-903 NWRETDEYSA EMKQFACTLY LCSSKVYDYV RKILKLPHSS ILRTWLSKCQ ENSBTAP00000030380/1-903 NWRETAEYSA EMKQFACTLY LCSSKVYDYV RKILKLPHSS ILRTWLSKCK ENSTTRP00000007254/1-903 NWRETAEYST EMKQFACTLY LCSSKVYDYV RKILKLPHSS ILRTWLSKCK bmy_20586T0/1-844 ---------- ---------- ---------- ---------- ----WLSKCK BACU002013/1-570 NWRETAEYST EMKQFACTLY LCSSKVYDYV RKILKLPHSS ILRTWLSKCK 251 300 ENSP00000305533/1-903 PSPGFNSNIF SFLQRRVENG DQLYQYCSLL IKSMPLKQQL QWDPSSHSLQ ENSBTAP00000030380/1-903 PGPGFNSNIF SFLQQKVENG DQRYQSCSLV IKGLSLTQQL QWDPSGHHLQ ENSTTRP00000007254/1-903 PGPGFSSNVF SFLQRKVENG DQLYQYCSLI IKGISLKQQL QWDPSSHHLL bmy_20586T0/1-844 PGPGFSSNVF SFLQRKVENG DQLYQYCSLI IKGISLKQQL QWDPSSHHLL BACU002013/1-570 PGPGFSSNVF SFLQRKVENG DQLYQYCSLI ITGVSLKQQL QWDPSSHHLL 301 350 ENSP00000305533/1-903 GFMDFGLGKL DADETPLASE TVLLMAVGIF GHWRTPLGYF FVNRASGYLQ ENSBTAP00000030380/1-903 GFMDFGLGTL DADEMPLASE TILLMAVGIS GHWSTPLGYF FVNRASGYLQ ENSTTRP00000007254/1-903 GFMDFGLGKL DADETPLASE TILLMAVGIS GHWRTPLGYF FVNRASGYLQ bmy_20586T0/1-844 GFMDFGLGKL DADETPLASE TVLLMAVGIS GHWRTPLGYF FVNRASGYLQ BACU002013/1-570 GFMDFGLGKL DADETPLASE TVLLMAVGIS GHWRTPLGYF FVNRASGYLQ 351 400 ENSP00000305533/1-903 AQLLRLTIGK LSDIGITVLA VTSDATAHSV QMAKALGIHI DGDDMKCTFQ ENSBTAP00000030380/1-903 AQLLRLTIGR LSDIGITVLA VTSDASAHSV QMAKALGIHL DGDNTKCTFQ ENSTTRP00000007254/1-903 AQLLRLTIGK LSDIGITVLA VTSDATAHSV QMAKALGIHL DGDNMKCTFQ bmy_20586T0/1-844 AQLLRLTIGK LSDIGITVLA VTSDATAHSV QMAKALGIHL DGDNMKCTFQ BACU002013/1-570 AQLLRLTIGK LSDIGITVLA VTSDATAHSV QMAKALGIHL DGDNMKCTFQ 401 450 ENSP00000305533/1-903 HPSSSSQQIA YFFDSCHLLR LIRNAFQNFQ SIQFINGIAH WQHLVELVAL ENSBTAP00000030380/1-903 HPSSSSQQIA YFFDSCHLLK LIRNAFQNFQ SIQFINGTAH WQHLVELAAL ENSTTRP00000007254/1-903 HPSSSSQQIA YFFDSCHLLR LIRNAFQNFQ SIQFINGTAH WQHLVGLAAL bmy_20586T0/1-844 HPSSSTQQIA YFFDSCHLLR LIRNAFQNFQ SIRFINGTAH WQHVVELAAL BACU002013/1-570 HPSSSSQQIA YFFDSCHLLR LIRNAFQNFQ SIRFINGTAH WQHVVELAAL 451 500 ENSP00000305533/1-903 EEQELSNMER IPSTLANLKN HVLKVNSATQ LFSESVASAL EYLLSLDLPP ENSBTAP00000030380/1-903 EEQELSHMER IPRKLANLKN HILKTNCAAQ VFSESVVRAL ECLLSLGLPS ENSTTRP00000007254/1-903 EEQELSNMER IPRKLANLKN HILKMNCAAQ LFSESVASAL ECLLSLGLPP bmy_20586T0/1-844 EEQELSNMER IPRKLANLKN HILKMNCAAQ LFSESVASAL ECLLSLGLPP BACU002013/1-570 EEQELSNMER IPRKLANLKN HILKMNCAAQ LFSESVASAL ECLLSLGLPP 501 550 ENSP00000305533/1-903 FQNCIGTIHF LRLINNLFDI FNSRNCYGKG LKGPLLPETY SKINHVLIEA ENSBTAP00000030380/1-903 FQNCVGTIHF LRLINNLFDI FNSRNFYGKG FKGPLLPETF NKINHVLTEA ENSTTRP00000007254/1-903 FQNCIGTIQF LRLINNLFDI FNSRNYYGKG LKGPLLPETF NKINHVLIEA bmy_20586T0/1-844 FQNCIGTVQF LRLINNLFDI FNSRNYYGKG LKGPLLPETF NKINHVLIEA BACU002013/1-570 FQNCIGTVQF LRLINNLFDI FNSRNYYGKG LKGPLLPETF NKINHVLIEA 551 600 ENSP00000305533/1-903 KTIFVTLSDT SNNQIIKGKQ KLGFLGFLLN AESLKWLYQN YVFPKVMPFP ENSBTAP00000030380/1-903 KTIFVTLSDT SNNQILKGKR KLGFLGFLLN AESLKWLYQN YVFPKVMPFP ENSTTRP00000007254/1-903 KTIFVTLSDI SNNQIIKGKR KLGFLGFLLN AESLKWLYQN YVSPKVMPFP bmy_20586T0/1-844 KTIFVTLSDT SNNQIIKGKR KLGFLGFLLN AESLKWLYQN YVSPKVMPFP BACU002013/1-570 KTIFVTLSDT SNNQIIKGRR ---------- ---------- ---------- 601 650 ENSP00000305533/1-903 YLLTYKFSHD HLELFLKMLR QVLVTSSSPT CMAFQKAYYN LETRYKFQDE ENSBTAP00000030380/1-903 YLLMYKFSQD HLELFLKMLR QVSVTTSNPT CVAFQKAYHN LETRHRLQDE ENSTTRP00000007254/1-903 YLLTYKFSQD HLELFLKMLR QVLVTSSNPT CMAFQKAYHN LETRYRLQDE bmy_20586T0/1-844 YLLTYKFSQD HLELFLKMLR QVLVTSSNPT CMAFQKAYHN LETRYRLQDE BACU002013/1-570 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000305533/1-903 VFLSKVSIFD ISIARRKDLA LWTVQRQYGV SVTKTVFHEE GICQDWSHCS ENSBTAP00000030380/1-903 VFLSEVSSLD ISIARRTDLA LGTVQREYGV SVIESLFYKE DICPDWSDCL ENSTTRP00000007254/1-903 VFLGEVSILD ISVARRTDLA LWTVQRQYGI SVIKTLFRKE DICQDWSDCS bmy_20586T0/1-844 VFLSEVSILD ISVARRTDLA LWAVQRQYGI SVIKTLFRKE DICRDWSDCS BACU002013/1-570 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000305533/1-903 LSEALLDLSD HRRNLICYAG YVANKLSALL TCEDCITALY ASDLKASKIG ENSBTAP00000030380/1-903 LSEALLDLSV RRRNLTSCAG YIANKLSALL TCEDCLSALY ASDLKASKIG ENSTTRP00000007254/1-903 LSEALLDLSD HRQNLTWCAS YIANKLSALL TCEDCISALY ASDLKSSKIG bmy_20586T0/1-844 LSEALLDLSD HRQNLTCCAG YIANKLSALL TCEDCISALY ASDLKSSKIG BACU002013/1-570 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000305533/1-903 SLLFVKKKNG LHFPSESLCR VINICERVVR THSRMAIFE- LVSKQRELYL ENSBTAP00000030380/1-903 SLLCVKKENG VHFPSESLCR VINTCERVVR THSKPTVHEP LLPKQREYYL ENSTTRP00000007254/1-903 SLLCVKKENG LHFPSESLCR VIDICERVVR THSRMAVYEL LLPKQREFYL bmy_20586T0/1-844 SLLCVKKENG LHFPSESLCR VIDICERVVR THSRMAVYEL LLPKQREFYL BACU002013/1-570 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000305533/1-903 QQKILCELSG HINLFVDVNK HLFDGEVCAI NHFVKLLKDI IICFLNIRAK ENSBTAP00000030380/1-903 QQKILYELSG HIYLFVELDE HLFDGEVYAI NHFVKLLKNI IICFLKIRAK ENSTTRP00000007254/1-903 QQKILHELSG HIYLFVDLDK HLFDGEVCAI NHFVKLLKDI IICFLKVRAK bmy_20586T0/1-844 QQKILHELSG HIYLFVDLDK HLFDGEVCAI NHFVKLLKDI IICFLKIRAK BACU002013/1-570 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000305533/1-903 NVAQNPLKHH SERTDMKTLS RKHWSSVQDY KCSSFANTSS KFRHLLSNDG ENSBTAP00000030380/1-903 DVTQYSLKHH SERIELKTLS SKHWSSSQNY RCSSFANT-N KFRHLLRNNR ENSTTRP00000007254/1-903 GVTQYPLKHH SERTETKTLS RKHWSSLQNY KCSSFANT-N KYRHLLRNDG bmy_20586T0/1-844 GVTQYPLKHH SERTETKTSS RKHWSSLQNY KCSSFANT-N KYRHLLRNDG BACU002013/1-570 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000305533/1-903 YPFK ENSBTAP00000030380/1-903 IPIK ENSTTRP00000007254/1-903 CLFK bmy_20586T0/1-844 YLFK BACU002013/1-570 ----