KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:40:22 2014 Check: 00 .. Name: ENSTTRP00000007266/1-737 Len: 749 Check: 2843 Weight: 1.00 Name: ENSBTAP00000030381/1-748 Len: 749 Check: 643 Weight: 1.00 Name: ENSP00000341947/1-749 Len: 749 Check: 2563 Weight: 1.00 Name: bmy_20585T0/1-748 Len: 749 Check: 1305 Weight: 1.00 Name: BACU002012/1-724 Len: 749 Check: 4648 Weight: 1.00 // 1 50 ENSTTRP00000007266/1-737 --------NS LLPEEIMDTG ITLVDDDSIE AVIVSSPIPM ETELEEIVNI ENSBTAP00000030381/1-748 MEVVPAEVNS LLPEEIMDTG ITLVDDDSIE AVIVSSPIPM ETELEEIVNI ENSP00000341947/1-749 MEVVPAEVNS LLPEEIMDTG ITLVDDDSIE AVIVSSPIPM ETELEEIVNI bmy_20585T0/1-748 MEVVPAEVNS LLPEEIMDTG ITLVDDDSIE AVIVSSPIPM ETELEEIVNI BACU002012/1-724 MEVVPAEVNS LLPEEIMDTG ITLVDDDGIE AVIVSSPIPM ETELEEIVNI 51 100 ENSTTRP00000007266/1-737 NSTGDSTATP ISTEPITVYS NHTNQVAVNT TITKADCNTT VKPAFPSGLQ ENSBTAP00000030381/1-748 NSTGDSAATP ISTEPITVHS NHTTRVAVNT TVTKADSNTT VKPAFPSGLQ ENSP00000341947/1-749 NSTGDSTATP ISTEPITVYS NHTNQVAVNT TITKADSNTT VKPAFPSGLQ bmy_20585T0/1-748 NSTGDSTATP ISTEPITVYS NHTNQVAVNT TITKADCNTT VKPAFPSGLQ BACU002012/1-724 SSTGDSTATP ISTEPITVYS NHTNQVAVNT TITKADCNTT VKPAFPSGLQ 101 150 ENSTTRP00000007266/1-737 KLGAQTPVTI SANQIILNKV SQTSDLKLGN QTLKPDGQKL ILTTLGKSGS ENSBTAP00000030381/1-748 KLGAQTPVTI SANQIILNKV SQTSDLKLGN QTLKPDGQKL ILTTLGKSGS ENSP00000341947/1-749 KLGAQTPVTI SANQIILNKV SQTSDLKLGN QTLKPDGQKL ILTTLGKSGS bmy_20585T0/1-748 KLGAQTPVTI SANQIILNKV SQTSDLKLGN QTLKPDGQKL ILTTLGKSGS BACU002012/1-724 KLGAQTPVTI SANQIILNKV SQTSDLKLGN QTLKPDGQKL ILTTLGKSGS 151 200 ENSTTRP00000007266/1-737 PIVLALPHSQ -PQAQKVTTQ AQSGDAKLPP QQIKVVTIGG RPEVKPVIGV ENSBTAP00000030381/1-748 PIVLALPHSQ -PQAQKVTTQ AQSGDAKLPP QQIKVVTIGG RPEVKPVIGV ENSP00000341947/1-749 PIVLALPHSQ LPQAQKVTTQ AQSGDAKLPP QQIKVVTIGG RPEVKPVIGV bmy_20585T0/1-748 PIVLALPHSQ -PQAQKVTTQ AQSGDAKLPP QQIKVVTIGG RPEVKPVIGV BACU002012/1-724 PIVLALPHSQ -PQAQKVTTQ AQSGDAKLPP QQIKVVTIGG RPEVKPVIGV 201 250 ENSTTRP00000007266/1-737 SALTPGSQLI NTTTQPSVLQ TQQLKTVQIA KKPRTPTSGP VITKLIFAKP ENSBTAP00000030381/1-748 SALTPGSQLL NTTTQPSVLQ TQQLKTVQIA KKPRTPTSGP VITKLIFAKP ENSP00000341947/1-749 SALTPGSQLI NTTTQPSVLQ TQQLKTVQIA KKPRTPTSGP VITKLIFAKP bmy_20585T0/1-748 SALTPGSQLI NTTTQPSVLQ TQQLKTVQIA KKPRTPTSGP VITKLIFAKP BACU002012/1-724 SALTPGSQLI NTTTQPSVLQ TQQLKTVQIA KKPRTPTSGP VITKLIFAKP 251 300 ENSTTRP00000007266/1-737 INSKAVTGQT TQV--PAIAG RVLSQSTPGT PSKTITISES GVIGSTLNST ENSBTAP00000030381/1-748 INSKAVTGQT TQVSPPVIAG RVLSQSTPGT PSKTITISES GVIGSTLNST ENSP00000341947/1-749 INSKAVTGQT TQVSPPVIAG RVLSQSTPGT PSKTITISES GVIGSTLNST bmy_20585T0/1-748 INSKAVTGQT TQVSPPVIAG RVLSQSTPGT PSKTITISES GVIGSTLNST BACU002012/1-724 INSKAVTGQT TQVSPPVIAG RVLSQSTPGT PSKTITISES GVIGSTLNST 301 350 ENSTTRP00000007266/1-737 TQTPNKIAIS PLKSPNKXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000030381/1-748 TQTPNKIAIS PLKSPNKAVK STVQTITVGG VSTSQFKTII PLATAPNVQQ ENSP00000341947/1-749 TQTPNKIAIS PLKSPNKAVK STVQTITVGG VSTSQFKTII PLATAPNVQQ bmy_20585T0/1-748 TQTPNKIAIS PLKSPNKAVK SAVQTITVGG VSTSQFKTII PLATAPNVQQ BACU002012/1-724 TQTPNKIAIS PLKSPNKAVK SAVQTITVGG VSTSQFKTII PLATAPNVQQ 351 400 ENSTTRP00000007266/1-737 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX KPVVVNTTPV ENSBTAP00000030381/1-748 IQVPGSKFHY VRLVTATTAS SSTQPVSQNP STNTQPLQQA KPVVVNTTPV ENSP00000341947/1-749 IQVPGSKFHY VRLVTATSAS SSTQPVSQNP STNTQPLQQA KPVVVNTTPV bmy_20585T0/1-748 IQVPGSKFHY VRLVTATTAS SSTQPVSQNP STNTQPLQQA KPVVVNTTPV BACU002012/1-724 IQVPGSKFHY VRLVTATTAS SSTQAVSQNP STNTQPLQQA KPVVVNTTPV 401 450 ENSTTRP00000007266/1-737 RMSVPLVSAQ TVKQVVPKPI NPTSQIVTTS QPQQRLIMPA TPLPQIQPNL ENSBTAP00000030381/1-748 RMSVPLVSAQ TVKQVVPKPI NPTSQIVTTS QPQQRLIMPA TPLPQIQPNL ENSP00000341947/1-749 RMSVPIVSAQ AVKQVVPKPI NPTSQIVTTS QPQQRLIMPA TPLPQIQPNL bmy_20585T0/1-748 RMSVPLVSAQ TVKQVVPKPI NPTSQIVTTS QPQQRLIMPA TPLPQIQPNL BACU002012/1-724 RMSVPLVSAQ TVKQVVPKPI NPTSQIVTTS QPQQRLIMPA TPLPQIQPNL 451 500 ENSTTRP00000007266/1-737 TNLPPGTVLA PAPGTGNVGY AVLPAQYVTQ LQQSSYVSIA SNSNFTGTPG ENSBTAP00000030381/1-748 TNLPPGTVLA PAPGTGNVGY AVLPAQYVTQ LQQSSYVSIA SNSNFTGTPG ENSP00000341947/1-749 TNLPPGTVLA PAPGTGNVGY AVLPAQYVTQ LQQSSYVSIA SNSTFTGTSG bmy_20585T0/1-748 TNLPPGTVLA PAPGTGNVGY AVLPAQYVTQ LQQSSYVSIA SNSNFTGTPG BACU002012/1-724 TNLPPGTVLA PAPGTGNVGY AVLPAQYVTQ LQQSSYVSIA SNSNFTGTPG 501 550 ENSTTRP00000007266/1-737 IQTQARLPFN GIMPSESASR PRKPCNCTKS LCLKLYCDCF ANGEFCNNCN ENSBTAP00000030381/1-748 IQTQARLPFN GIIPSESASR PRKPCNCTKS LCLKLYCDCF ANGEFCNNCN ENSP00000341947/1-749 IQTQARLPFN GIIPSESASR PRKPCNCTKS LCLKLYCDCF ANGEFCNNCN bmy_20585T0/1-748 IQTQARLPFN GIMPSESASR PRKPCNCTKS LCLKLYCDCF ANGEFCNNCN BACU002012/1-724 IQTQSRLPFN G--------- ---------- -----YCDCF ANGEFCNNCN 551 600 ENSTTRP00000007266/1-737 CTNCYNNLEH ENERQKAIKA CLDRNPEAFK PKIGKGKEGE SDRRHSKGCN ENSBTAP00000030381/1-748 CTNCYNNLEH ENERQKAIKA CLDRNPEAFK PKIGKGKEGE SDRRHSKGCN ENSP00000341947/1-749 CTNCYNNLEH ENERQKAIKA CLDRNPEAFK PKIGKGKEGE SDRRHSKGCN bmy_20585T0/1-748 CTNCYNNLEH ENERQKAIKA CLDRNPEAFK PKIGKGKEGE SDRRHSKGCN BACU002012/1-724 CTNCYNNLEH ENERQKAIKA CLDRNPEAFK PKIGKGKEGE SDRRHSKGCN 601 650 ENSTTRP00000007266/1-737 CKRSGCLKNY CECYEAKIMC SSICKCIGCK NFEESP-RKT LMHLADAADV ENSBTAP00000030381/1-748 CKRSGCLKNY CECYEAKIMC SSICKCIGCK NFEESPERKT LMHLADAAEV ENSP00000341947/1-749 CKRSGCLKNY CECYEAKIMC SSICKCIGCK NFEESPERKT LMHLADAAEV bmy_20585T0/1-748 CKRSGCLKNY CECYEAKIMC SSICKCIGCK NFEESPERKT LMHLADAAEV BACU002012/1-724 CKRSGCLKNY CECYEAKIMC SSICKCIGCK NFEESPERKT LMHLADAAEV 651 700 ENSTTRP00000007266/1-737 RVQQQTAAQT KLSSQISDLL TRPTPXLTSG RRKLPFTFVT KEVAEATCNC ENSBTAP00000030381/1-748 RVQQQTAAKT KLSSQISDLL TRPAPALNSG GGKLPFTFVT KEVAEATCNC ENSP00000341947/1-749 RVQQQTAAKT KLSSQISDLL TRPTPALNSG GGKLPFTFVT KEVAEATCNC bmy_20585T0/1-748 RVQQQTAAKT KLSSQISDLL TRPTPALNSG GGKLPFTFVT KEVAEATCNC BACU002012/1-724 RVQQQTAAKT KLSSQISDLL TRPTPALNSG GGKLPFTFVT KEVAEATCNC 701 750 ENSTTRP00000007266/1-737 LLAQAEQADK KGKSKAAAER MILEEFGRCL MSVINSAGKA KSDPCAMNC ENSBTAP00000030381/1-748 LLAQAEQADK KGKSKAAAER MILEEFGRCL MSVINSAGKA KSDPCAMNC ENSP00000341947/1-749 LLAQAEQADK KGKSKAAAER MILEEFGRCL MSVINSAGKA KSDPCAMNC bmy_20585T0/1-748 LLAQAEQADK KGKSKAAAER MILEEFGRCL MSVINSAGKA KSDPCAMNC BACU002012/1-724 LLAQAEQADK KGKSKAAAER MILEEFGRCL MSVINSAGKA KSDPCAMNC