KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:40:23 2014 Check: 00 .. Name: BACU013833/1-80 Len: 789 Check: 6847 Weight: 1.00 Name: ENSP00000464330/1-685 Len: 789 Check: 6820 Weight: 1.00 Name: ENSBTAP00000030397/1-679 Len: 789 Check: 3096 Weight: 1.00 Name: bmy_02527T0/1-703 Len: 789 Check: 6013 Weight: 1.00 Name: ENSTTRP00000014484/1-676 Len: 789 Check: 1538 Weight: 1.00 // 1 50 BACU013833/1-80 ---------- ---------- ---------- ---------- ---------- ENSP00000464330/1-685 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030397/1-679 ---------- ---------- ---------- ---------- ---------- bmy_02527T0/1-703 MCGEQKGMAM IPPMAPQRHL VTEIRPKAGH TPVFFSVVHK IDSKGLITET ENSTTRP00000014484/1-676 ---------- ---------- ---------- ---------- ---------- 51 100 BACU013833/1-80 ---------- ---------- -------MLG AVPQSRREDA EERGPAARET ENSP00000464330/1-685 ------MNDS RQQSLFFITL PDLNKLCAVR IILSNKVADT EIRTIQMKMC ENSBTAP00000030397/1-679 ------MNDS KQQSLFFITL PDLHKLCAVK IILSNGVAGT EIRSRQMKIC bmy_02527T0/1-703 FSQQESMNDS RQQSLFFITL PDLHKLCAVR IILSNGVADT EMRSTQVKIC ENSTTRP00000014484/1-676 ------MNDS RQQSLFFITL PDLHKLCAVR IILSNGVADN EMRSTQLKIC 101 150 BACU013833/1-80 E--------- ---------- ---------I PFYKAGKLNA YIEKYGAK-- ENSP00000464330/1-685 R--QLLFLHQ DILTSPVSGI LNQIWVVMAI PFYKARKLNA YVEKYGAKME ENSBTAP00000030397/1-679 R--QLLFLHQ DILTSPVPGI FTQIWAVMAI TFYKAGKLNA YMEKYGAKVE bmy_02527T0/1-703 RLMQLLFLHQ DILTSPVPEI FTQIWVVMAI PFYKAGKLNA YIEKYGAKVE ENSTTRP00000014484/1-676 R--QLLFLHQ DILTSPVPEI FTQIWVVMAI PFYKAGKLNA YIEKYGAKVE 151 200 BACU013833/1-80 ---------- ---------- ---------- ---------- ---------- ENSP00000464330/1-685 APQRVIPVIL QNCLSYSFMA RLAPAWNRTG HLLIQGRDFL SQMGKQSAVV ENSBTAP00000030397/1-679 APQQVIPIIL QNCLSYSLTA RLAPAWNKAG HLLIQGREFL SQMGKQSAVV bmy_02527T0/1-703 APQRVIPVIL QNCLSYSLTA RLAPAWNKAG HLLVQ----- ---------V ENSTTRP00000014484/1-676 APQRVIPVIL -NCLSYSLTA RLAPAWNKAG HLLVQGREFL SQMGKQSAVV 201 250 BACU013833/1-80 ---------- ---------- ------LRE- ---------- ---------- ENSP00000464330/1-685 LNINVTETQV CLSIEACTIR LPAPE-LKE- ---------- ---------- ENSBTAP00000030397/1-679 LDINVTSTQV CLSIEVHTVR LPPPQKLRE- ---------- ---------- bmy_02527T0/1-703 LDINVTETQV CLSIEAYTIR LPPPQ-WKDM SFILLILVAP SIESYALMNL ENSTTRP00000014484/1-676 LDINVTETQV CLSIEAYTIR LPPPQ-LRE- ---------- ---------- 251 300 BACU013833/1-80 -------FDI SQSIIKDFET NKNAVIAGHS ILSNWCYVLP R--------- ENSP00000464330/1-685 -------FEI SQSIIKDFHA NKHAVIERHS ILSNWCYVLP SMKMGQIINI ENSBTAP00000030397/1-679 -------FDI SQSIIKSFET NQNAVIEEQS ILSNWCYVLP SMKMGRLISI bmy_02527T0/1-703 LHSFMAHLSL ITVIIKDFET NKNAVIAGHS ILSNWCYVLP SMKMGQIISI ENSTTRP00000014484/1-676 -------FDI SQSIIKDFET NKNAVITGHS ILSNWCYVLP SMKMGQIISI 301 350 BACU013833/1-80 ---------- ---------- ---------- ---------- ---------- ENSP00000464330/1-685 FHAIPAACPF HSYGDFQRHW DALYG--YKL PGDCGKIKIY CNIYFKMLGE ENSBTAP00000030397/1-679 LHTIPPDCPF HSYEDFQMHW DGLYG--YKL PEDLGTIKIY CCIYFKMIGE bmy_02527T0/1-703 LHTIPPDCPF HSYEDFQMHW DDLFASLCRK PYSKGT---- ---------- ENSTTRP00000014484/1-676 LHTIPPDCPF HSYEDFQMHW DDLYS--YKL PENYGTTKIY CSIYFKMIGR 351 400 BACU013833/1-80 ---------- ---------- ---------- ---------- ---------- ENSP00000464330/1-685 RTFTYPLSCI RSQPMQFFPR VDSEVVLKSF LSDLKSKLPH ICGFPIKMTS ENSBTAP00000030397/1-679 RLFTYPLSCV RSQPIQFFPR VDMEGVLRSF LSDLKSKLPH ICGFPIKMTT bmy_02527T0/1-703 ---------- ---------- ---------- ---------- -------MTT ENSTTRP00000014484/1-676 RIFTYPLSCI RSQPIQFFPR VDMESVLKSF LSDLKSKLPH ICGFPIKMTT 401 450 BACU013833/1-80 ---------- ---------- ---------- ---------- ---------- ENSP00000464330/1-685 KPCYYTQELT KPNIQ----- ---------E HKVKPPNLTT KKMLRASLTQ ENSBTAP00000030397/1-679 KPCYYTQELT TLHLQ----- ---------G NKVKPPNLTA QA--KSSPAH bmy_02527T0/1-703 KPCYYTQELT KLYLQPTSVL KVPTSVLKVE NKVKPPNLTT KQKFRSSLAR ENSTTRP00000014484/1-676 KPLYYTQELT KLYLQ----- ---------E KKVKPPNLTT KQKFRSSLAQ 451 500 BACU013833/1-80 ---------- ---------- ---------- ---------- ---------- ENSP00000464330/1-685 ATSRKPACAQ SLLPCSVAVD HKVELSVSQP TSGIFSALHL QPESVQGRKK ENSBTAP00000030397/1-679 TPSTRAARAP SFPPCSAAAG HKGARSVSPP KPSGSSALRL QPESVLSSKK bmy_02527T0/1-703 APSTRPAQAQ SIPLHSVATD HEVELPVSQP KPYVSSTLHL QPESVQSRKK ENSTTRP00000014484/1-676 APSTRPAQAQ SIPLHSVATD RKVELSVSQP KPYVSSTLHL QPESVQSRKK 501 550 BACU013833/1-80 ---------- ---------- ---------- ---------- ---------- ENSP00000464330/1-685 SLSIRAPQVH SEVLMPNRGN TQVQHTNLSS QSNITPKFVP VFKNRLLQMN ENSBTAP00000030397/1-679 APSDQAAQV- LEVPKPTRGN AQVQDTNFSS QHNIAPRFIP VFKSRPLQMT bmy_02527T0/1-703 SLPDKAAQVH LEVPKLNRGN KQVQDTDFSS QHNIAPKFIP VFKNRQLQMN ENSTTRP00000014484/1-676 SLPDKAAQVH LEVPKLNRGS AQVQDTDFSS QHNIAPKFIP VFKNRQLQMN 551 600 BACU013833/1-80 ---------- ---------- ---------- ---------- ---------- ENSP00000464330/1-685 KNTSVLGSPK RKQHDVTQSK LFSLKTSMIQ HDKLNLGPAI KNRYSSNIQM ENSBTAP00000030397/1-679 KSILAPENLR RK-RVDTESK LFSLKSSEIQ DDKPNVDPTT KKRPSHSIQM bmy_02527T0/1-703 KNIFEPDNLK RK-H-VTDSK LLSLKTSVIQ DDKLNLDPAS KKRSNRSIQM ENSTTRP00000014484/1-676 KNILEPDNLK RK-HVVTESK LLSLKTSVIQ DDKLNLDPAI KKRSNHSIQM 601 650 BACU013833/1-80 ---------- ---------- ---------- ---------- ---------- ENSP00000464330/1-685 QAANNLNQEN SRPLQEKNTE SSENMTKFPS SRGKSTV-SL NKNKQLSNSA ENSBTAP00000030397/1-679 K-AKNLNLKT CRSLQEKNTE SYGNMTKSPL SSGKSLITSL SESKQLSNSS bmy_02527T0/1-703 K--------T SRSLQEKNTE SFENMTENPP SSGKLPVMSL SKSKQLSNSS ENSTTRP00000014484/1-676 K--------T SRSLQEKNTE SFENMTENPP SSGKLSVMSL SEIKQLPNSS 651 700 BACU013833/1-80 ---------- ---------- ---------- ---------- ---------- ENSP00000464330/1-685 VFVVSNNNLG VVKSAVDFQM KGKENLTGKG ITQILGKSHG SLKLKRQPHI ENSBTAP00000030397/1-679 VFQMPTSNLD VLKSAVGSQV NGKENLTSKY ITQVLGKSHE SLKVKRQPHI bmy_02527T0/1-703 VFRMSNNTLG VIKSAVDFQV NEKENLTSKY ITQILGKGHE SLKVKRPPHI ENSTTRP00000014484/1-676 VFQMSNNKLG VIKSVVDFQV NEKENLTSKY ITQILGKGHE SLKVKRPPHI 701 750 BACU013833/1-80 ---------- ---------- ---------- ---------- ---------- ENSP00000464330/1-685 FESDGETEDP RLLQQQSENQ AKEVGTSDHR LIVSKIAHRS KRKLCPESSK ENSBTAP00000030397/1-679 FESDTDPEDS QPLQPQSVDQ TKEADVTDRQ LTVSRTAPKS K-KLCQDSLK bmy_02527T0/1-703 FESDTETEDS QLLQQQSVDQ TKEADVSDHR LIVSRTAHKS KRKLCQDSSE ENSTTRP00000014484/1-676 FESDTETEDS QLLQQQSVDQ TKEADVNDHQ LIVDRTALKS KRKLCQDSSE 751 800 BACU013833/1-80 ---------- ---------- ---------- --------- ENSP00000464330/1-685 TSKKHHSDTV HYGQSSSSKK QILDSDKSKL KKSLIIHNA ENSBTAP00000030397/1-679 TSKKPHSNTV LCGQ-SRARK QIHHLDKSKP KKSLI-PKA bmy_02527T0/1-703 TSKKPHSNTI HYGQSSSSKN QIHNLDKSKP KKSLIIPKA ENSTTRP00000014484/1-676 TSKKPHSNTI HYGQSSSSKN QIHNLDKSKH KKSLIFRKA