KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:40:27 2014 Check: 00 .. Name: ENSP00000260116/1-278 Len: 283 Check: 9071 Weight: 1.00 Name: ENSBTAP00000030408/1-282 Len: 283 Check: 3895 Weight: 1.00 Name: ENSTTRP00000009102/1-212 Len: 283 Check: 6098 Weight: 1.00 Name: bmy_01350T0/1-283 Len: 283 Check: 7907 Weight: 1.00 Name: BACU019591/1-212 Len: 283 Check: 6009 Weight: 1.00 // 1 50 ENSP00000260116/1-278 MAEARSQPSA GPQLNALPDH SPLLQPGLAA LRRRAREAGV PLAPLPLTDS ENSBTAP00000030408/1-282 MAEARPGP-A GLQLSALPDH SPLLQPSLAE LRRRAGAAGA PLAGWLLSDA ENSTTRP00000009102/1-212 ---------- ---------- ---------- ---------- ---------- bmy_01350T0/1-283 MAEARPGPAA GAQLNGLPDH SPLLQPSLAE LRRRAGEAGA RPARRPLSDA BACU019591/1-212 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000260116/1-278 FLLRFLRARD FDLDLAWRLL KNYYKWRAEC PEISADLHPR SIIGLLKAGY ENSBTAP00000030408/1-282 FLLRFLRARD FDLDLAWRLL KNYFKWRAEC PEISADLHPR SILGLLKSGY ENSTTRP00000009102/1-212 ---------- --------LL ENYYKWRAEC PEISADLHPR SVLGLLKAGY bmy_01350T0/1-283 FLLRFLRARD FDLDLAWQLL KNYYKWREEC PEVSADLHPR SILGLLKAGY BACU019591/1-212 ---------- --------LL KNYYKWREEC PEVSADLHPR SILGLLKAGY 101 150 ENSP00000260116/1-278 HGVLRSRDPT GSKVLIYRIA HWDPKVFTAY DVFRVSLITS ELIVQEVETQ ENSBTAP00000030408/1-282 VGVLRARDPT GSKVLIYRIA HWDPKVFTAY DAFRVSLITS ELIVQEVETQ ENSTTRP00000009102/1-212 VGVLRARDPT GSKVLIYRIA HWDPKVFTAY DVFRVSLITS ELIVQEVETQ bmy_01350T0/1-283 IGVLRARDPT GSKVLIYRIA HWDPKVFTAY DVFRVSLITS ELLVQEVETQ BACU019591/1-212 VGVLRARDPT GSKVLIYRIA HWDPKVFTAY DVFRVSLITS ELIVQEVETQ 151 200 ENSP00000260116/1-278 RNGIKAIFDL EGWQFSHAFQ ITPSVAKKIA AVLTDSFPLK VRGIHLINEP ENSBTAP00000030408/1-282 RNGIKAVFDL EGWQFAHAFQ ITPSVAKKIA AVLTDSFPLK VRGIHLINEP ENSTTRP00000009102/1-212 RNGIKAVFDL EGWQFSHAFQ MTPSVAKKIA AVLTDSFPLK VRGIHLINEP bmy_01350T0/1-283 RNGIKAIFDL EGWQFSHAFQ ITPSVARKIA AVLTDSFPLK VRGIHLINEP BACU019591/1-212 RNGIKAIFDL EGWQFSHAFQ ITPSVAKKIA AALTDSFPLK VRGIHLINEP 201 250 ENSP00000260116/1-278 VIFHAVFSMI KPFLTEKIKE RIHMHGNNYK QSLLQHFPDI LPLEYGGEEF ENSBTAP00000030408/1-282 IIFHAVFSMI KPFLTEKIKE RIHMHGDNYK QSLLQYFPDI LPLEYGGEEY ENSTTRP00000009102/1-212 IIFHAVFSMI KPFLTEKIKE RIHMHGDNYK QRLLQHFPDI LPVEYGGKEY bmy_01350T0/1-283 IIFHAVFSMI KPFLTEKIKE RIHMHGDNYK QSLLQHFPDI LPVEYGGEEY BACU019591/1-212 IIFHAVFSMI KPFLTEKIKE RIHMHGDNYK QSLHQHFPDI LPVEYGGEEY 251 300 ENSP00000260116/1-278 SMEDICQEWT NFIMKSEDYL SSISESIQ-- --- ENSBTAP00000030408/1-282 SIEDICQEWT NFIMKSENYL SSISQTVKGE EVT ENSTTRP00000009102/1-212 SMEDICQEWT NFIMKSENYL SSISQTAKGE --- bmy_01350T0/1-283 SMEDICQEWT NFIMKSENYL SSISQTVKGE EVI BACU019591/1-212 SMEDICQEWT NFIMKSENYL SSISQTVKGE ---