KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:40:43 2014 Check: 00 .. Name: ENSP00000352299/1-407 Len: 432 Check: 1796 Weight: 1.00 Name: ENSBTAP00000030528/1-404 Len: 432 Check: 8255 Weight: 1.00 Name: ENSTTRP00000010019/1-403 Len: 432 Check: 9339 Weight: 1.00 Name: bmy_19254T0/1-411 Len: 432 Check: 9908 Weight: 1.00 Name: BACU019731/1-409 Len: 432 Check: 298 Weight: 1.00 // 1 50 ENSP00000352299/1-407 MTPMKRSVQT QVSEPFMESW GEESLPELPA EQSLTEYSDL EEAPSAHTLY ENSBTAP00000030528/1-404 LTGRDHQNTG TPLTPAMEPP GRQPLRELPP EEPPPEDSGA KAAPSRHILY ENSTTRP00000010019/1-403 ETSRKRSPR- QVQEPLMEPP GKRPLQELPA EESVSEDSST KAAPSRHVLY bmy_19254T0/1-411 ---------- ------MEPP GKQPLQELPA EESMSEDSST EAAPSRHVLY BACU019731/1-409 ETSRKRSPR- -VQEPLMEPP GKRPLQELPA EESVSEDSST EAAPSRHVLY 51 100 ENSP00000352299/1-407 VGHLNPQFSV PVLACLLRDT LERLEMPVAR EHIEVVRRPR KAYALVQVTV ENSBTAP00000030528/1-404 VGHLNPQFSV PVLSCLLRDA LERLELPVAR EHIEVVRRPR QAYALVQVAT ENSTTRP00000010019/1-403 VGHLNPQFSV PVLACLLRDA LERLELPVAR EHIQVVRQPR KAYALVQVAA bmy_19254T0/1-411 VGHLNPQFSV PVLACLLRDA LERLELPVAR EHIQVVRQPR RAYALVQVAA BACU019731/1-409 VGHLNPQFSV PVLACLLRDA LERLELPVAR EHIQVVRQPR RAYALVQVAA 101 150 ENSP00000352299/1-407 HRDTLASLPW RLQTALEEHL ILKELAARGK DLLLSEAQGP FSHRE----- ENSBTAP00000030528/1-404 PEDTLASLPR RLHRAWGQHQ IIKELVARGK EPVLGEGREL SNRRE----- ENSTTRP00000010019/1-403 HEDTLASLPW RLRTALEEHQ VIQELVAPGK ELVLGEGREP SNRRE----- bmy_19254T0/1-411 HEDTLASLPW RLHTALEEHQ IIKELVAPGK ELVLGEGREP SNRREVSEAF BACU019731/1-409 HEDTLASLPW RLHTALEEHQ IIKELVAPGK ELVLGEGREP SNRRE----- 151 200 ENSP00000352299/1-407 ---------- ---EKEEEEE DSGLSPGPSP GS---GVPLP TW-PTHTLPD ENSBTAP00000030528/1-404 ---------Q ENEESLEQEE DTGPSP---- -------PRA R--PARPLPT ENSTTRP00000010019/1-403 ---------- -------QKE DSSPSPSPSP SPILGSRPRL AW-LAGPLPT bmy_19254T0/1-411 PEPGGPPAAE PHSREAWQEE DSGPSPSLSP GPILGSSPPP AW-LAGPLPT BACU019731/1-409 ---------- --VSEAFPEP GGPPAAEPHS REAWVRMARA AWGLAGPLPT 201 250 ENSP00000352299/1-407 RPQAQQLQSC QGRPSGVCSD SAIVHQQIVG KDQLFQGAFL GSETRNMEFK ENSBTAP00000030528/1-404 RALGPQ-GVS PSWPSGTRSD SAITDQGILG QERLFQGAFL GNETRNLEFK ENSTTRP00000010019/1-403 RPL-PR-QDS PGRPSGTRSD SAIAHQEILG QERLFQGAFL GSETRNVEFK bmy_19254T0/1-411 QAPTPR-RDY PGRPSGTRSD SAIVHQEILG QERLFQGAFL GSETRNVEFK BACU019731/1-409 QAPTPR-RDS PGRPSGTRSD SAIVHQEILG QECLFQGAFL GSETRNVEFK 251 300 ENSP00000352299/1-407 RGSGEYLSLA FKHHVRRYVC AFLNSEGGSL LVGVEDSGLV QGIRCSHRDE ENSBTAP00000030528/1-404 RGGGEYLSQA FKHHLRRYVC AFLNSEGGSL LVGVEDSGLV QGVRCSHRDE ENSTTRP00000010019/1-403 RGGGEYLSQA FKHHLRRYVC AFLNSEGGSL LVGVEDSGLV QGIRCSHRDE bmy_19254T0/1-411 RGGGEYLSQA FKHHLRRYVC AFLNSEGGSL LVGVEDSGLV QGIRCSHRDE BACU019731/1-409 RGGGEYLSQA FKHHLRRYVC AFLNSEGGSL LVGVEDSGLV QGIRCSHRDE 301 350 ENSP00000352299/1-407 DRARLLVDSI LQGFKPQIFP DAYTLTFIPV ISTSETSVPL KVIRLTVHTP ENSBTAP00000030528/1-404 DRVRLLVDSV LQGFKPQVFP DAYRLTFIPV VSTSTTDTLL KVIRLSVQAP ENSTTRP00000010019/1-403 DRVRLLVDSI LQGFNPQVFP DAYKLTFIPV VSTSATGTPL KVIRLSVHAP bmy_19254T0/1-411 DRVRLLVDSI LQGFKPQVFP DAYKLTFIPV VSTSATGTPL KVIRLSVHAP BACU019731/1-409 DRVRLLVDSI LQGFKPQVFP DAYKLTFIPV VSTSATGTPL KVIRLSVHAP 351 400 ENSP00000352299/1-407 KAQSQPQLYQ TDQGEVFLRR DGSIQGPLSA SAIQEWCRQR WLVELGKLEE ENSBTAP00000030528/1-404 KAQAEPQLYE TDQGEVFLRR DGSIQGPLSV SAIQEWCRQK WMAELSKLEE ENSTTRP00000010019/1-403 KAQAQPQLYE TDQGEVFLRR DGSIQGPLSV RAIQEWGRQK WTAELSKLEE bmy_19254T0/1-411 KAQAQPQLYE TDQGEVFLRR DGSIQGPLSV RAIQEWGRQK WTAELSKLEE BACU019731/1-409 KAQAQPQLYE TDQGEVFLRR DGSIQGPLSV RAIQEWGRQK WTAELSKLEE 401 450 ENSP00000352299/1-407 KMKALMMEKE QLQQQL---Q QHGPVSCTCC VL ENSBTAP00000030528/1-404 RLQALTAEKE QLQQQLQQQQ QHRPVSCTCC VL ENSTTRP00000010019/1-403 RLRVLTAEKE QLQQQL---Q RYKPISCTCC VL bmy_19254T0/1-411 RLRVLTAEKE QLQQQL---R RYKPVSCTCC VL BACU019731/1-409 RLRVLTAEKE QLQQQL---R RYKPTSCTCC VL