KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:40:48 2014 Check: 00 .. Name: ENSP00000405620/1-1194 Len: 1278 Check: 3962 Weight: 1.00 Name: ENSTTRP00000002168/1-1194 Len: 1278 Check: 2026 Weight: 1.00 Name: ENSBTAP00000030598/1-1220 Len: 1278 Check: 4865 Weight: 1.00 Name: bmy_05608T0/1-752 Len: 1278 Check: 2972 Weight: 1.00 Name: BACU002430/1-1278 Len: 1278 Check: 320 Weight: 1.00 // 1 50 ENSP00000405620/1-1194 MFSLDSFRKD RAQHRQRQCK LPP------- -PR-LPPMCV NP-------- ENSTTRP00000002168/1-1194 MFSLDSFRKD RAQHRQRQCK LPP------- -PR-LPPMCV NP-------- ENSBTAP00000030598/1-1220 MATARRLMAL AAGVSPRLRP LGPRAIGRQG GPRGLSTGCS RPDRTQEAAE bmy_05608T0/1-752 MAAARRLMAL AAGVSPRLRP LAPYTPGRQG RPRGLSTGCI HSDRTKAAAE BACU002430/1-1278 MAAARRLMAL AAGVSPRLRP LAPYIPGRQG RPRGLSTGCI PPDSTKAAAE 51 100 ENSP00000405620/1-1194 --------TP G---GTISRA SRDLLKEFPQ PKNLLNSVIG RALGISHAKD ENSTTRP00000002168/1-1194 --------AP G---GTISRA SRDLLKEFPQ PKNLLNSVIG RALGISHAKD ENSBTAP00000030598/1-1220 AE--AAPGEP GEGDGSVVNA SRDLLKEFPQ PKNLLNSVIG RALGISHAKD bmy_05608T0/1-752 AEAGAAPDGP GEGDGSMVNA SRDLLKEFPQ PKNLLNSVIG RALGISHAKD BACU002430/1-1278 AEAGAAPDGP GEGDGSMVNA SRDLLKEFPQ PKNLLNSVIG RALGISHAKD 101 150 ENSP00000405620/1-1194 KLVYVHTNGP KKKKVTLHIK WPKSVEVEGY GSKKIDAERQ AAAAACQLFK ENSTTRP00000002168/1-1194 KLVYVHTNGP KKKKVTLHIK WPKSVEVEGY GSKKIDAERQ AAAAACQLFK ENSBTAP00000030598/1-1220 KLVYVHTNGP KKKKVTLHIK WPKSVEVEGY GSKKIDAERQ AAAAACQLFK bmy_05608T0/1-752 KLVYVHTNGP KKKKVTLHIK WPKSVEVEGY GSKKIDAERQ AAAAACQLFK BACU002430/1-1278 KLVYVHTNGP KKKKVTLHIK WPKSVEVEGY GSKKIDAERQ AAAAACQLFK 151 200 ENSP00000405620/1-1194 GWGLLGPRNE LFDAAKYRVL ADRFGSPADS WWRPEPTMPP TSWRQLNPES ENSTTRP00000002168/1-1194 GWGLLGPRNE LFDAAKYRVL ADRFGSPADS WWRPEPTMPP TSWRQLNPES ENSBTAP00000030598/1-1220 GWGLLGPRNE LFDAAKYRVL ADRFGSPADS WWRPEPTMPP TSWRQLNPES bmy_05608T0/1-752 GWGLLGPRNE LFDAAKYRVL ADRFGSPADS WWRPEPTMPP TSWRQLNPES BACU002430/1-1278 GWGLLGPRNE LFDAAKYRVL ADRFGSPADS WWRPEPTMPP TSWRQLNPES 201 250 ENSP00000405620/1-1194 IRPGGPGGLS RSLGREEEED EEEELEEGTI DVTDFLSMTQ QDSHAPLRDS ENSTTRP00000002168/1-1194 IRPGGPGGLS RSLGREEEED EEEELEEGTI DVTEFLSMAQ QDSHTPLRDS ENSBTAP00000030598/1-1220 IRPGGPGGLS RSLGREEEED EEEELEEGTI DVTEFLSMTQ QDSHAPLRDS bmy_05608T0/1-752 IRPGGPGGLS RSLGREEEED EEEELEEGTI DVTEFLSMTQ QDSHTPLRDS BACU002430/1-1278 IRPGGPGGLS RSLGREEEED EEEELEEGTI DVTEFLSMTQ QDSHTPLRDS 251 300 ENSP00000405620/1-1194 RGSSFEMTDD DSAIRALTQF PLPKNLLAKV IQIATSSSTA KNLMQFHTVG ENSTTRP00000002168/1-1194 RGGSFEMTDD DSAIRALTQF PLPKNLLAKV IQIATSSSTA KNLMQFHTVG ENSBTAP00000030598/1-1220 RGGSFEMTDD DSAIRALTQF PLPKNLLAKV IQIATSSSTA KNLMQFHTVG bmy_05608T0/1-752 RGGSFEMTDD DSAIRALTQF PLPKNLLAKV IQIATSSSTA KNLMQFHTVG BACU002430/1-1278 RGGSFEMTDD DSAIRALTQF PLPKNLLAKV IQIATSSSTA KNLMQFHTVG 301 350 ENSP00000405620/1-1194 TKTKLSTLTL LWPCPMTFVA KGRRKAEAEN KAAALACKKL KSLGLVDRNN ENSTTRP00000002168/1-1194 TKTKLSTLTL LWPCPMTFVA KGRRKAEAEN KAAALACKKL KSLGLVDRNN ENSBTAP00000030598/1-1220 TKTKLSTLTL LWPCPMTFVA KGRRKAEAEN KAAALACKKL KSLGLVDRNN bmy_05608T0/1-752 TKTKLSTLTL LWPCPMTFVA KGRRKAEAEN KAAALACKKL KSLGLVDRNN BACU002430/1-1278 TKTKLSTLTL LWPCPMTFVA KGRRKAEAEN KAAALACKKL KSLGLVDRNN 351 400 ENSP00000405620/1-1194 EPLTHAMYNL ASLRELGETQ RRPCTIQVPE PILRKIETFL NHYPVESSWI ENSTTRP00000002168/1-1194 EPLTHAMYNL ASLRELGETQ RRPCTIQVPE PILRKIETFL NHYPMDSSWI ENSBTAP00000030598/1-1220 EPLTHAMYNL ASLRELGETQ RRPCTIQVPE PILRKIETFL NHYPVESSWI bmy_05608T0/1-752 EPLTHAMYNL ASLRELGETQ RRPCTIQVPE PILRKIETFL NHYPMDSSWI BACU002430/1-1278 EPLTHAMYNL ASLRELGETQ RRPCTIQVPE PILRKIETFL NHYPMDSSWI 401 450 ENSP00000405620/1-1194 APELRLQSDD ILPLGKDSGP LSDPITGKPY VPLLEAEEVR LSQSLLELWR ENSTTRP00000002168/1-1194 SPELRLQSDD ILPLGKDSGP LGDPITGKPY MPLSETEELR LSQSLLELWR ENSBTAP00000030598/1-1220 SSELRLQGED ILPLGKDSGP LSDPITGKPY VPLSEAEELR LSQSLLELWR bmy_05608T0/1-752 SPELRLQSDD ILPLGKDSGP LGDPITGKPY VPLSETEELR LSQSLLELWR BACU002430/1-1278 SPELRLQSDD ILPLGKDSGP LGDPITGKPY VPLSETEELR LSQSLLELWR 451 500 ENSP00000405620/1-1194 RRGPVWQEAP QLPVDPHRDT ILNAIEQHPV VVISGDTGCG KTTRIPQLLL ENSTTRP00000002168/1-1194 RRGPVWQEAP QLPVDPHRDT ILSAIEQHPV VVIAGDTGCG KTTRIPQLLL ENSBTAP00000030598/1-1220 RRGPVWQEAP QLPVDPHRDT ILNAIEQHPV VVIAGDTGCG KTTRIPQLLL bmy_05608T0/1-752 RRGPVWQEAP QLPVDPHRDT ILSAIEQHPV VVIAGDTGCG KTTRIPQLLL BACU002430/1-1278 RRGPVWQEAP QLPVDPHRDT ILSAIEQHPV VVIAGDTGCG KTTRIPQLLL 501 550 ENSP00000405620/1-1194 ERYVTEGRGA RCNVIITQPR RISAVSVAQR VSHELGPSLR RNVGFQVRLE ENSTTRP00000002168/1-1194 ERYVTEGRGA RCNVIITQPR RISAVSVAQR VSHELGPSLR RNVGFQVRLE ENSBTAP00000030598/1-1220 ERYVTEGRGA RCNVIITQPR RISAVSVAQR VSHELGPSLR RNVGFQVRLE bmy_05608T0/1-752 ERYVTEGRGA RCNVIITQPR RISAVSVAQR VSHELGPSLR RNVGFQVRLE BACU002430/1-1278 ERYVTEGRGA RCNVIITQPR RISAVSVAQR VSHELGPSLR RNVGFQVRLE 551 600 ENSP00000405620/1-1194 SKPPSRGGAL LFCTVGILLR KLQSNPSLEG VSHVIVDEVH ERDVNTDFL- ENSTTRP00000002168/1-1194 SKPPARGGAL LFCTVGILLR KLQSNPSLEG VSHVIVDEVH ERDVNTDFL- ENSBTAP00000030598/1-1220 SKPPARGGAL LFCTVGILLR KLQSNPSLEG VSHVVVDEVH ERDVNTDFL- bmy_05608T0/1-752 SKPPARGGAL LFCTVGILLR KLQSNPSLEG VSHVIVDEVH ERDVNTDFL- BACU002430/1-1278 SKPPARGGAL LFCTVGILLR KLQSNPSLEG VSHVIVDEVH ERDVNTDFLX 601 650 ENSP00000405620/1-1194 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002168/1-1194 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030598/1-1220 ---------- ---------- ---------- ---------- ---------- bmy_05608T0/1-752 ---------- ---------- ---------- ---------- ---------- BACU002430/1-1278 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 651 700 ENSP00000405620/1-1194 -----LILLK GLQRLNPALR LVLMSATGDN ERFSRYFGGC PVIKVPGFMY ENSTTRP00000002168/1-1194 -----LILLK GLQRLNPALR LVLMSATGDN ERFSRYFGGC PVIKVPGFMY ENSBTAP00000030598/1-1220 -----LILLK GLQRLNPALR LVLMSATGDN ERFSRYFGGC PVIKVPGFMY bmy_05608T0/1-752 -----LILLK GLQRLNPALR LVLMSATGDN ERFSRYFGGC PVIKVPGFMY BACU002430/1-1278 XXXXXXXLLK GLQRLNPALR LVLMSATGDN ERFSRYFGGC PVIKVPGFMY 701 750 ENSP00000405620/1-1194 PVKEHYLEDI LAKLGKHQYL HRHRHHESED ECALDLDLVT DLVLHIDARG ENSTTRP00000002168/1-1194 PVKEHYLEDI LAKLGKHQYP HRHRHHESED ECALDLDLVT DLVLHIDARG ENSBTAP00000030598/1-1220 PVKEHYLEDI LAKLGKHQYP HRHRHHESED ECALDLDLVT DLVLHIDARG bmy_05608T0/1-752 PVKEHYLEDI LAKLGKHQYP HRHRHHESED ECALDLDLVT DLVLHIDARG BACU002430/1-1278 PVKEHYLEDI LAKLGKHQYP HRHRHHESED ECALDLDLVT DLVLHIDARG 751 800 ENSP00000405620/1-1194 EPGGILCFLP GWQEIKGVQQ RLQEALGMHE SKYLILPVHS NIPMMDQKAI ENSTTRP00000002168/1-1194 EPGGILCFLP GWQEIKGVQQ RLQEALGMHE SKYLILPVHS NIPMMDQKAI ENSBTAP00000030598/1-1220 EPGGILCFLP GWQEIKGVQQ RLQEALGMHE SKYLILPVHS NIPMMDQKAI bmy_05608T0/1-752 EPGGILCFLP GWQEIKGVQQ RLQEALGMHE SKYLILPGES M--------- BACU002430/1-1278 EPGGILCFLP GWQEIKGVQQ RLQEALGMHE SKYLILPVHS NIPMIDQKAI 801 850 ENSP00000405620/1-1194 FQQPPVGVRK IVLATNIAET SITINDIVHV VDSGLHKEER YDLKTKVSCL ENSTTRP00000002168/1-1194 FQQPPVGVRK IVLATNIAET SITINDIVHV VDSGLHKEER YDLKTKVSCL ENSBTAP00000030598/1-1220 FQQPPIGVRK IVLATNIAET SITINDIVHV VDSGLHKEER YDLKTKVSCL bmy_05608T0/1-752 ---------- ---------- ---------- ---------- --------CA BACU002430/1-1278 FQQPPVGVRK IVLATNIAET SITINDIVHV VDSGLHKEER YDLKTKVSCL 851 900 ENSP00000405620/1-1194 ETVWVSRANV IQRRGRAGRC QSGFAYHLFP RSRLEKMVPF QVPEILRTPL ENSTTRP00000002168/1-1194 ETVWVSRANV IQRRGRAGRC QSGFAYHLFP RSRLEKMAPF QVPEILRTPL ENSBTAP00000030598/1-1220 ETVWVSRANV IQRRGRAGRC QSGFAYHLFP RSRLEKMAPF QVPEILRTPL bmy_05608T0/1-752 RTV------- ---------- ---------- ---------- ---------- BACU002430/1-1278 ETVWVSRANV IQRRGRAGRC QSGFAYHLFP RSRLEKMAPF QVPEILRTPL 901 950 ENSP00000405620/1-1194 ENLVLQAKIH MPEKTAVEFL SKAVDSPNIK AVDEAVILLQ EIGVLDQREY ENSTTRP00000002168/1-1194 ENLVLQAKIH MPEKTAVEFL SKAVDSPNIK AVDEAVILLQ EIGVLDQREY ENSBTAP00000030598/1-1220 ENLVLQAKIH MPEKTAVEFL SKAVDSPNIK AVDEAVILLQ EIGVLDQREY bmy_05608T0/1-752 ---------- ---------- ---------- ---------- ---------- BACU002430/1-1278 ENLVLQAKIH MPEKTAVEFL SKAVDSPNIK AVDEAVILLQ EIGVLDQREY 951 1000 ENSP00000405620/1-1194 LTTLGQRLAH ISTDPRLAKA IVLAAIFRCL HPLLVVVSCL TRDPFSSSLQ ENSTTRP00000002168/1-1194 LTTLGQRLAH ISTDPRLAKA IVLAAIFRCL HPLLVVVSCL TRDPFSSSLQ ENSBTAP00000030598/1-1220 LTTLGQRLAH ISTDPRLAKA IVLAAIFRCL HPLLVVVSCL TRDPFSSSLQ bmy_05608T0/1-752 ---------- -APDTRLA-- ---------- ---------- ---------- BACU002430/1-1278 LTTLGQRLAH ISTDPRLAKA IVLAAIFRCL HPLLVVVSCL TRDPFSSSLQ 1001 1050 ENSP00000405620/1-1194 NRAEVDKVKA LLSHDSGSDH LAFVRAVAGW EEVLRWQDRS SRENYLEENL ENSTTRP00000002168/1-1194 NRAEVDKVKA LLSHDSGSDH LAFVRAVSGW EEVLRWQDRS SRENYLEENL ENSBTAP00000030598/1-1220 NRAEVDKVKA LLSHDSGSDH LAFVRAVSGW EEVLRWQDRS SRENYLEENL bmy_05608T0/1-752 ---------- ---------- ---------- ---------- ---------- BACU002430/1-1278 NRAEVDKVKA LLSHDSGSDH LAFVRAVSGW EEVLRWQDRS SRENYLEENL 1051 1100 ENSP00000405620/1-1194 LYAPSLRFIH GLIKQFSENI YEAFLVGKPS DCTLASAQCN EYSEEEELVK ENSTTRP00000002168/1-1194 LYAPSLRFIH GLIKQFSENI YEAFLVGKPS DCTLASAQCN EYSEEEELVK ENSBTAP00000030598/1-1220 LYAPSLRFIH GLIKQFSENI YEAFLVGKPS DCTLASAQCN EYSEEEELVK bmy_05608T0/1-752 ---------- ---------- ---------- ---------- ---------- BACU002430/1-1278 LYAPSLRFIH GLIKQFSENI YEAFLVGKPS DCTLASAQCN EYSEEEELVK 1101 1150 ENSP00000405620/1-1194 GVLMAGLYPN LIQVRQGKVT RQGKFKPNSV TYRTKSGNIL LHKSTINREA ENSTTRP00000002168/1-1194 GVLMAGLYPN LIQVRQGKVT RQGKFKPNSV TYRTKSGNIL LHKSTINREA ENSBTAP00000030598/1-1220 GVLMAGLYPN LIQVRQGKVT RQGKFKPNSV TYRTKSGNIL LHKSTINREA bmy_05608T0/1-752 ------LCP- ---------- ---------- ---------- ---------- BACU002430/1-1278 GVLMAGLYPN LIQVRQGKVT RQGKFKPNSV TYRTKSGNIL LHKSTINREA 1151 1200 ENSP00000405620/1-1194 TRLRSRWLTY FMAVKSNGSV FVRDSSQVHP LAVLLLTDGD VHIRDDGRRA ENSTTRP00000002168/1-1194 TRLRSRWLTY FMAVKSNGSV FVRDSSQVHP LAVLLLTDGD VHIRDDGRRA ENSBTAP00000030598/1-1220 TRLRSRWLTY FMAVKSNGSV FVRDSSQVHP LAVLLLTDGD VHIRDDGRRA bmy_05608T0/1-752 ---------- ---------- ---------- --------GE ---------- BACU002430/1-1278 TRLRSRWLTY FMAVKSNGSV FVRDSSQVHP LAVLLLTDGD VHIRDDGRRA 1201 1250 ENSP00000405620/1-1194 TISLSDSDLL RLEGDSRTVR LLKELRRALG RMVERSLRSE LAALPPSVQE ENSTTRP00000002168/1-1194 TISLSDSDLL RLEGDSRTVR LLRELRRALG RMVERSLRSE LAALPPCVQE ENSBTAP00000030598/1-1220 TISLSDSDLL RLEGDSRTVR LLRELRRALG RMVERSLRSE LAALPPCVQE bmy_05608T0/1-752 ---------- ---------- ---------- ---------- ---------- BACU002430/1-1278 TISLSDSDLL RLEGDSRTVR LLRELGQALG RMVERSLRSE LAALPPCVQE 1251 1300 ENSP00000405620/1-1194 EHGQLLALLA ELLRGPCGSF DVRKTADD ENSTTRP00000002168/1-1194 EHGQLLALLA ELLRGPCGSF DVRKTADD ENSBTAP00000030598/1-1220 EHGQLLALLA ELLRGPCGSF DVRKTADD bmy_05608T0/1-752 ---------- ---------- -------- BACU002430/1-1278 EHGQLLALLA ELLRGPCGSF DVRKTADD