KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:40:50 2014 Check: 00 .. Name: ENSTTRP00000002574/1-709 Len: 805 Check: 3253 Weight: 1.00 Name: ENSBTAP00000030635/1-712 Len: 805 Check: 5213 Weight: 1.00 Name: ENSP00000414287/1-725 Len: 805 Check: 5273 Weight: 1.00 Name: bmy_06013T0/1-774 Len: 805 Check: 7850 Weight: 1.00 Name: BACU002394/1-748 Len: 805 Check: 3170 Weight: 1.00 // 1 50 ENSTTRP00000002574/1-709 ---------- ----MGWLPL LLLLTGFLGA PGQRSPLNDF QVLWGTELQH ENSBTAP00000030635/1-712 ---------- ----MGWLPL LLLLIWFSGA PGQRSPLNDF QVLRGTELQH ENSP00000414287/1-725 MGLWWVTVQP PARRMGWLPL LLLLTQCLGV PGQRSPLNDF QVLRGTELQH bmy_06013T0/1-774 ---------- ----MGWLPL LLLLTGFSGA PGQRSPLNDF QVLRGTELQH BACU002394/1-748 ---------- ----MGWLPL LLLLTGFSGA PGQRSPLNDF QVLRGTELQH 51 100 ENSTTRP00000002574/1-709 LLHTVGPRPW QEDVANAEEC AGLCGPLLDC RAFHYNVSSH GCQLLPWTQH ENSBTAP00000030635/1-712 LLHSVGPGPW QEDVANAEEC AGLCGPLLDC RAFHYNLSSH GCQLLPWTQH ENSP00000414287/1-725 LLHAVVPGPW QEDVADAEEC AGRCGPLMDC RAFHYNVSSH GCQLLPWTQH bmy_06013T0/1-774 LLHAVGPRPW QEDVANAEEC AGICGPLLDC RAFHYNVSSH GCQLLPWTQH BACU002394/1-748 LLHAVGRRPW QEDVANAEEC AGICGPLLDC RAFHYNVSSH GCQLLPWTQH 101 150 ENSTTRP00000002574/1-709 SPHTRLQRSR RCDLFQKKMY VRTCIMDNGV EYRGTVAITM GGLPCQRWSH ENSBTAP00000030635/1-712 SPHTRLQRSG RCDLFQKKNY VRTCIVDNGV EYRGTVAITV GGLPCQRWSH ENSP00000414287/1-725 SPHTRLRRSG RCDLFQKKDY VRTCIMNNGV GYRGTMATTV GGLPCQAWSH bmy_06013T0/1-774 SPHTRLQRST RCDLFQKKIY VRTCIMDNGV EYRGTVAITM GGLPCQRWSH BACU002394/1-748 SAHTRLQRSR RCDLFQKKIY VRTCIMDNGV EYRGTVAITM GGLPCQRWSH 151 200 ENSTTRP00000002574/1-709 RFPNDHKYTP TLRNGLDDNF CRNPDRDPRG PWCYTTDPAV RFQSCGIKSC ENSBTAP00000030635/1-712 RFPNDHKFTP TLRNGLEENF CRNPDRDPGG PWCYTTDPAV RFQSCGIKSC ENSP00000414287/1-725 KFPNDHKYTP TLRNGLEENF CRNPDGDPGG PWCYTTDPAV RFQSCGIKSC bmy_06013T0/1-774 RFPNDHKYTP TLRNGLEDNF CRNPDRDPGG PWCYTTDPAV RFQSCGIKSC BACU002394/1-748 RFPNDHKYTP TLRNGLEDNF CRNPDRDPGG PWCYTTDPAV RFQSCGIKSC 201 250 ENSTTRP00000002574/1-709 REAACLWCNG EDYRGSVDRT ESGRECQRWD LQHPHPHPFE PRKFLDKSLD ENSBTAP00000030635/1-712 REATCLWCNG EDYRGSVDST ESGRECQRWD LQHPHPHPFE PG-FWTKIWT ENSP00000414287/1-725 REAACVWCNG EEYRGAVDRT ESGRECQRWD LQHPHQHPFE PGKFLDQGLD bmy_06013T0/1-774 REAACLWCNG EDYRGSVDRT ESGRECQRWD LQHPHPHPFE PRKFLDKSLD BACU002394/1-748 REAACLWCNG EDYRGSVDRT ESGRECQRWD LQHPHPHPFE PRKFLDKSLD 251 300 ENSTTRP00000002574/1-709 DNYCRNPDGS ERPWCYTADP QMKREFCDLP RCG------- ---------- ENSBTAP00000030635/1-712 TTIAGIRTAR SGPGAIPPTR RWRESSATSP AAV------- ---------- ENSP00000414287/1-725 DNYCRNPDGS ERPWCYTTDP QIEREFCDLP RCG------- ---------- bmy_06013T0/1-774 DNYCRNPDGS ERPWCYTADP QMKREFCDLP RCGRARGRGL GGHLGHVGAP BACU002394/1-748 DNYCRNPDGS ERPWCYTADP QMKREFCDLP RCAPV----- --------SP 301 350 ENSTTRP00000002574/1-709 ---------- ---------- ---------- ---SEAQPRR EATTLNCFRG ENSBTAP00000030635/1-712 ---------- ---------- ---------- -QRSEAQPSQ EATTLNCFRG ENSP00000414287/1-725 ---------- ---------- ---------- ---SEAQPRQ EATTVSCFRG bmy_06013T0/1-774 GLTSDSGSDR PRSI------ ---------- -QGSEAQPRR EATTLNCFRG BACU002394/1-748 PTRAPTGLGP SKGPXXXXXX XXXXXXXXXX XXXXXXXXXX XXXTLNCFRG 351 400 ENSTTRP00000002574/1-709 KGEGYRGTVN TTAAGVPCQR WDAQHPHQHR FAPEKYACKD LRENFCRIPT ENSBTAP00000030635/1-712 KGEGYRGTVN TTAAGVPCQR WDAQLPHQHR FAPEKYACKD LRENFCRNPD ENSP00000414287/1-725 KGEGYRGTAN TTTAGVPCQR WDAQIPHQHR FTPEKYACKD LRENFCRNPD bmy_06013T0/1-774 KGEGYRGTVN TTAAGVPCQR WDAQHPHQHR FALEKYACKD LRENFCRNPD BACU002394/1-748 KGEGYRGTVN TTAAGVPCQR WDAQHPHQHR FAPEKYACKD LRENFCRNPD 401 450 ENSTTRP00000002574/1-709 GS-AP-CFTR RPGXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000030635/1-712 GSEAPWCFTS RPGMRMAFCY QIRRCTDDVR PEDCYHGAGE LYRGSVSKTR ENSP00000414287/1-725 GSEAPWCFTL RPGMRAAFCY QIRRCTDDVR PQDCYHGAGE QYRGTVSKTR bmy_06013T0/1-774 GSEAPWCFTS RPGMRVAFCY QIRRCTDDVR PEDCYHGAGE LYRGSVSKTR BACU002394/1-748 GSEAPWCFTS RPGMRVAFCY QIRRCTDDVR PEDCYHGAGE LYRGSVSKTR 451 500 ENSTTRP00000002574/1-709 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXS HGPWCYTTDP ENSBTAP00000030635/1-712 KGIRCQNWSA ETPHKPQFKH TSAPHTPLEE NFCRNPDGDS HGPWCYTTDP ENSP00000414287/1-725 KGVQCQRWSA ETPHKPQFTF TSEPHAQLEE NFCRNPDGDS HGPWCYTMDP bmy_06013T0/1-774 KGVRCQRWSA GTPHKPQFTP TSTPHAPLEE NFCRNPDGDS HGPWCYTTDP BACU002394/1-748 KGVRCQRWSA GTPHKPQFTP TSTPHAPLEE NFCRNPDGDS HGPWCYTTDP 501 550 ENSTTRP00000002574/1-709 ETTFDYCALR RCDDDQPPSI LE-------- ---------- ---------- ENSBTAP00000030635/1-712 GTPFDYCALR RCDDDQQPSI LE-------- ---------- ---------- ENSP00000414287/1-725 RTPFDYCALR RCADDQPPSI LD-------- ---------- ---------- bmy_06013T0/1-774 GTPFDYCALR RCDDDQPPSI LEPPGTDLGQ ACVVVPLPPI SIQSGVSPST BACU002394/1-748 GTPFDYCALR RCDDDQPPSI LE-------- ---------- ---------- 551 600 ENSTTRP00000002574/1-709 --PPDQVLFE KCGKRVTRLD PWRSKLRVVG GQPGNSPWTV SLRNRQGQHF ENSBTAP00000030635/1-712 --TAHQVLFD KCGKRVTRVD PLHSKLRVVG GQPGNSPWTV SLRNRQGQHF ENSP00000414287/1-725 --PPDQVQFE KCGKRVDRLD QRRSKLRVVG GHPGNSPWTV SLRNRQGQHF bmy_06013T0/1-774 FYPPDQVLFE KCGKRVTRLD PRRSKLRVVG GQPGNSPWTV SLRNRQGQHF BACU002394/1-748 --PPDQVLFE KCGKRVTRLD PRRSKLRVVG GQPGNSPWTV SLRNRQGQHF 601 650 ENSTTRP00000002574/1-709 CGGSLVKEQW VLTARQCFSS CHGPLTGYEV WLGTLFQDPQ PGQPGLQRIS ENSBTAP00000030635/1-712 CGGSLVKEQW VLTARQCFSS CHMSLVGYEV WLGTLFQDPQ PGEPDLQHIP ENSP00000414287/1-725 CGGSLVKEQW ILTARQCFSS CHMPLTGYEV WLGTLFQNPQ HGEPSLQRVP bmy_06013T0/1-774 CGGSLVKEQW VLTARQCFSS CHGPLTGYEV WLGTLFTDPQ PGEPGLQRIS BACU002394/1-748 CGGSLVKEQW VLTARQCFSS CHGPLTGYEV WLGTLFPDPQ PGEPGLQRIS 651 700 ENSTTRP00000002574/1-709 MAKMVCGPSG SQLVLLKLER PATLNQRVAL ICLPPEWYVV PPGTKCEIAG ENSBTAP00000030635/1-712 MAKMVCGPSG SQLVLLKLER PVILNQRVAL ICLPPERYVV PPGTRCEIAG ENSP00000414287/1-725 VAKMVCGPSG SQLVLLKLER SVTLNQRVAL ICLPPEWYVV PPGTKCEIAG bmy_06013T0/1-774 MAKMVCGPSG SQLVLLKLER PVTLNQRVAL ICLPPEWYVV PPGTKCEIAG BACU002394/1-748 MAKMVCGPSG SQLVLLKLER PVTLNQRVAL ICLPPEWYVV PPGTKCEIAG 701 750 ENSTTRP00000002574/1-709 WGETKGTGDN TVLNIASLNV ISNRECNIKH RGRVRESEMC TEGLLAPAGA ENSBTAP00000030635/1-712 WGETKGTGDD TVLNIALLSV ISNQECNVKH RGRVRESEMC TAGLLAPVGA ENSP00000414287/1-725 WGETKGTGND TVLNVALLNV ISNQECNIKH RGRVRESEMC TEGLLAPVGA bmy_06013T0/1-774 WGETKGTGDN TVLNIASLNV ISNRECNIKH RGRVRESEMC TEGLLAPVGA BACU002394/1-748 WGETKGTGDN MVLNIASLNV ISNRECNIKH RGRVRESEMC TEGLLAPVGA 751 800 ENSTTRP00000002574/1-709 CEGDYGGPLA CFTHDCWVLE GIIIPNRVCA RPRWPSIFMR VSVFVDWIHK ENSBTAP00000030635/1-712 CEGDYGGPLA CFTHDCWVLQ GIIIPNRVCA RPRWPAIFMR VSVFVDWIHK ENSP00000414287/1-725 CEGDYGGPLA CFTHNCWVLE GIIIPNRVCA RSRWPAVFTR VSVFVDWIHK bmy_06013T0/1-774 CEGDYGGPLA CFTHDCWVLE GIIIPNRVCA RPRWPSIFMR VSVFVDWIHK BACU002394/1-748 CEGDYGGPLA CFTHDCWVLE GIIIPNRVCA RPRWPSIFMR VSVFVDWIHK 801 850 ENSTTRP00000002574/1-709 VMRLG ENSBTAP00000030635/1-712 VMRLG ENSP00000414287/1-725 VMRLG bmy_06013T0/1-774 VMRLG BACU002394/1-748 VMRLG