KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:40:51 2014 Check: 00 .. Name: bmy_17360T0/1-1238 Len: 1516 Check: 8079 Weight: 1.00 Name: ENSBTAP00000030640/1-1507 Len: 1516 Check: 5799 Weight: 1.00 Name: BACU002362/1-1507 Len: 1516 Check: 5498 Weight: 1.00 Name: ENSP00000393183/1-1078 Len: 1516 Check: 1194 Weight: 1.00 Name: ENSTTRP00000001349/1-1478 Len: 1516 Check: 248 Weight: 1.00 // 1 50 bmy_17360T0/1-1238 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030640/1-1507 MTTVAVHVDS KAELTTLLEQ WEKEHGSGQD MVPILTRMSE LIEKETEEYR BACU002362/1-1507 MTTVAVHVDS KAELTTLLEQ WEKEHGSGQD MVPILTRMSE LIEKETEEYR ENSP00000393183/1-1078 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001349/1-1478 MTTVAVHVDS KAELTTLLEQ WEKEHGSGQD MVPILTRMSE LIEKETEEYR 51 100 bmy_17360T0/1-1238 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030640/1-1507 KGDPDPFDDR HPGRADPECM LGHLLRILFK NDDFMNALVN AYVMTSREPP BACU002362/1-1507 KGDPDPFDDR HPGRADPECM LGHLLRILFK NDDFMNALVN AYVMTSREPP ENSP00000393183/1-1078 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001349/1-1478 KGDPDPFDDR HPXXXXXXXX XXXXXXXXXX XXXXXXXLVN AYVMTSREPP 101 150 bmy_17360T0/1-1238 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030640/1-1507 LNTAACRLLL DIMPGLETAV VFQEKEGIVE NLFKWAREAD QPLRTYSTGL BACU002362/1-1507 LNTAACRLLL DIMPGLETAV VFQEKEGIVE NLFKWAQGAD QPLRTYSTGL ENSP00000393183/1-1078 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001349/1-1478 LNTAACRLLL DIMPGLETAV VFQEKEGIVE NLFKWAREAD QPLRTYSTGL 151 200 bmy_17360T0/1-1238 ----MENQDI AANYRDENSQ LVAIVLRRLR ELQLQEVALR QESKRPSPRK ENSBTAP00000030640/1-1507 LGGAMENQDI AANYRDENSQ LVAIVLRRLR ELQLQEVGSR QESKRPSPRK BACU002362/1-1507 LGGAMENQDI AANYRDENSQ LVAIVLRRLR ELQLQEVALR QESKRPSPRK ENSP00000393183/1-1078 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001349/1-1478 LGGAMENQDI AANYRDENSQ LVAIVLRRLR ELQLQEVALR QESKRPSPRK 201 250 bmy_17360T0/1-1238 LSSEPLLPLD EEAVDMDYGD MAVDVVDGEQ EEASGDMEIS FHLDSGHKTS ENSBTAP00000030640/1-1507 LSSEPLLPLD EEAVDMDYGD MAVDVVDGEQ EEASGDMEIS FHLESGHKTS BACU002362/1-1507 LSSEPLLPLD EEAVDMDYGD MAVDVVDGEQ EEASGDMEIS FHLDSGHKTS ENSP00000393183/1-1078 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001349/1-1478 LSSEPLLPLD EEAVDMDYGD MAVDVVDGEQ EEASGDMEIS FHLDSAHKTS 251 300 bmy_17360T0/1-1238 SRVNSATKPE EGGLRKNKSA KQGDRESFRK AKQKLGFSSS DPDRMFVELS ENSBTAP00000030640/1-1507 SRVNSATKLE EGALRKNKST KQADRESFRK AKQKLGFSSS DPDRMFVELS BACU002362/1-1507 SRVNSATKPE EGGLRKNKSA KQGDRESFRK AKQKLGFSSS DPDRMFVELS ENSP00000393183/1-1078 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001349/1-1478 SRVNSATKPE EGGLRKNKSA KQGDRESFRK AKQKLGFSSS DPDRMFVELS 301 350 bmy_17360T0/1-1238 NSSWSEMSPW VIGTNYTLYP MTPAIEQRLI LQYLTPLGEY QELLPIFMQL ENSBTAP00000030640/1-1507 NSSWSEMSPW VIGTNYTLYP MTPAIEQRLI LQYLTPLGEY QELLPIFMQL BACU002362/1-1507 NSSWSEMSPW VIGTNYTLYP MTPAIEQRLI LQYLTPLGEY QELLPIFMQL ENSP00000393183/1-1078 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001349/1-1478 NSSWSEMSPW VIGTNYTLYP MTPAIEQRLI LQYLTPLGEY QELLPIFMQL 351 400 bmy_17360T0/1-1238 GSRDLMMFYI DLKQTNDVLL TFEALKHLAS LLLHNKFATE FVAHGGVQKL ENSBTAP00000030640/1-1507 GSRELMMFYI DLKQTNDVLL TFEALKHLAS LLLHNKFATE FVAHGGVQKL BACU002362/1-1507 GSRDLMMFYI DLKQTNDVLL TFEALKHLAS LLLHNKFATE FVAHGGVQKL ENSP00000393183/1-1078 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001349/1-1478 GSRDLMMFYV DLKQTNDVLL TFEALKYVAS L--------D FI-------- 401 450 bmy_17360T0/1-1238 LEIPRPSMAA TGVSMCLYYL SYNQDAMERV CMHPHNVLSD VVNYTLWLME ENSBTAP00000030640/1-1507 LEIPRPSMAA TGVSMCLYYL SYNQDAMERV CMHPHNVLSD VVNYTLWLME BACU002362/1-1507 LEIPRPSMAA TGVSMCLYYL SYNQDAMERV CMHPHNVLSD VVNYTLWLME ENSP00000393183/1-1078 ---------- ---------- ---------V CMHPHNVLSD VVNYTLWLME ENSTTRP00000001349/1-1478 ---------- --VQLYTYCM MLGIDVI-KV CMHPHNVLSD VVNYTLWLME 451 500 bmy_17360T0/1-1238 CSHASGCCHA TMFFSICFSF RAVLELFDRY DGLRRLVNLI STLEILNLED ENSBTAP00000030640/1-1507 CSHASGCCHA TMFFSICFSF RAVLELFDRY DGLRRLVNLI STLEILNLED BACU002362/1-1507 CSHASGCCHA TMFFSICFSF RAVLELFDRY DGLRRLVNLI STLEILNLED ENSP00000393183/1-1078 CSHASGCCHA TMFFSICFSF RAVLELFDRY DGLRRLVNLI STLEILNLED ENSTTRP00000001349/1-1478 CSHASGCCHA TMFFSICFSF RAVLELFDRY DGLRRLVNLI STLEILNLED 501 550 bmy_17360T0/1-1238 QGALLSDDEI FASRQTGKHT CMALRKYFEA HLAIKLEQVK QSLQRTEGGI ENSBTAP00000030640/1-1507 QGALLSDDEI FASRQTGKHT CMALRKYFEA HLAIKLEQVK QSLQRTEGGI BACU002362/1-1507 QGALLSDDEI FASRQTGKHT CMALRKYFEA HLAIKLEQVK QSLQRTEGGI ENSP00000393183/1-1078 QGALLSDDEI FASRQTGKHT CMALRKYFEA HLAIKLEQVK QSLQRTEGGI ENSTTRP00000001349/1-1478 QGALLSDDEI FASRQTGKHT CMALRKYFEA HLAIKLEQVK QSLQRTEGGI 551 600 bmy_17360T0/1-1238 LVHPQPPYKN MAQRSYIGSQ LKSSSNFLVS NSCCSL---- ---FLLLVIG ENSBTAP00000030640/1-1507 LVHPQPPYKA C---SYTHEQ IVEMMEFLIE YGPAQLYWEP AEVFLKLSCV BACU002362/1-1507 LVHPQPPYKA C---SYTHEQ IVEMMEFLIE YGPAQLYWEP AEVFLKLSCV ENSP00000393183/1-1078 LVHPQPPYKA C---SYTHEQ IVEMMEFLIE YGPAQLYWEP AEVFLKLSCV ENSTTRP00000001349/1-1478 LVHPQPPYKA C---SYTHEQ IVEMMEFLIE YGPAQLYWEP AEVFLKLSCV 601 650 bmy_17360T0/1-1238 RPIMQVENRA KRDKAQGKTG NGIRRNDTVR FALDVLAILT VVPKIQLQLA ENSBTAP00000030640/1-1507 QLLLQLISIA CNWKTY---- --YARNDTVR FALDVLAILT VVPKIQLQLA BACU002362/1-1507 QLLLQLISIA CNWKTY---- --YARNDTVR FALDVLAILT VVPKIQLQLA ENSP00000393183/1-1078 QLLLQLISIA CNWKTY---- --YARNDTVR FALDVLAILT VVPKIQLQLA ENSTTRP00000001349/1-1478 QLLLQLISIA CNWKTY---- --YARNDTVR FALDVLAILT VVPKIQLQLA 651 700 bmy_17360T0/1-1238 ESVDVLDEAG STVSTVGISI ILGVAEGEFF IHDAEIQKSA LQIIINCVCG ENSBTAP00000030640/1-1507 ESVDVLDEAG STVSTVGISI ILGVAEGEFF IHDAEIQKSA LQIIINCVCG BACU002362/1-1507 ESVDVLDEAG STVSTVGISI ILGVAEGEFF IHEAEIQKSA LQIIINCVCG ENSP00000393183/1-1078 ESVDVLDEAG STVSTVGISI ILGVAEGEFF IHDAEIQKSA LQIIINCVCG ENSTTRP00000001349/1-1478 ESVDVLDEAG STVSTVGISI ILGVAEGEFF IHDAEIQKSA LQIIINCVCG 701 750 bmy_17360T0/1-1238 PDNRISSIGK FISGTPRRKL PQTPKSSEHT LAKMWNVVQS NNGIKVLLSL ENSBTAP00000030640/1-1507 PDNRISSIGK FISGTPRRKL PQTPKSSEHT LAKMWNVVQS NNGIKVLLSL BACU002362/1-1507 PDNRISSIGK FISGTPRRKL PQTPKSSEHT LAKMWNVVQS NNGIKVLLSL ENSP00000393183/1-1078 PDNRISSIGK FISGTPRRKL PQNPKSSEHT LAKMWNVVQS NNGIKVLLSL ENSTTRP00000001349/1-1478 PDNRISSIGK FISGTPRRKL PQTPKSSEHT LAKMWNVVQS NNGIKVLLSL 751 800 bmy_17360T0/1-1238 LSIKMPITDA DQIRALACKA LVGLSRSSTV RQIISKLPLF SSCQIQQLMK ENSBTAP00000030640/1-1507 LSVKMPITDA DQIRALACKA LVGLSRSSTV RQIISKLPLF SSCQIQQLMK BACU002362/1-1507 LSIKMPIIDA DQIRALACKA LVGLSRSSTV RQIISKLPLF SSCQIQQLMK ENSP00000393183/1-1078 LSIKMPITDA DQIRALACKA LVGLSRSSTV RQIISKLPLF SSCQIQQLMK ENSTTRP00000001349/1-1478 LSIKMPITDA DQIRALACKA LVGLSRSSTV RQIISKLPLF SSCQIQQLMK 801 850 bmy_17360T0/1-1238 EPVLQDKRSD HVKFCKYAAE LIERVSGKPL LIGTDVSLAR LQKADVVAQS ENSBTAP00000030640/1-1507 EPVLQDKRSD HVKFCKYAAE LIERVSGKPL LIGTDVSLAR LQKADVVAQS BACU002362/1-1507 EPVLQDKRSD HVKFCKYAAE LIERVSGKPL LIGTDVSLAR LQKADVVAQS ENSP00000393183/1-1078 EPVLQDKRSD HVKFCKYAAE LIERVSGKPL LIGTDVSLAR LQKADVVAQS ENSTTRP00000001349/1-1478 EPVLQDKRSD HVKFCKYAAE LIERVSGKPL LIGTDVSLAR LQKADVVAQS 851 900 bmy_17360T0/1-1238 RISFPEKELL LLIRNHLISK GLGETATVLT KEADLPMTAA SHSSAFTPVT ENSBTAP00000030640/1-1507 RISFPEKELL LLIRNHLISK GLGETATVLT KEADLPMTAA SHSSAFTPVT BACU002362/1-1507 RISFPEKELL LLIRNHLISK GLGETATVLT KEADLPMTAA SHSSAFTPVT ENSP00000393183/1-1078 RISFPEKELL LLIRNHLISK GLGETATVLT KEADLPMTAA SHSSAFTPVT ENSTTRP00000001349/1-1478 RISFPEKELL LLIRNHLISK GLGETATVLT KEADLPMTAA SHSSAFTPVT 901 950 bmy_17360T0/1-1238 AAASPVSLPR TPRIANGIAT RLGSHAAVGA SAPSAPTAHP QPRASQGSLA ENSBTAP00000030640/1-1507 AAASPVSLPR TPRIANGIAT RLGSHAAVGT SAPSAPAAHP QPRVPQGSLA BACU002362/1-1507 AAASPVSLPR TPRIANGIAT RLGSHAAVGA SAPSAPTAHP QPRASQGSLA ENSP00000393183/1-1078 AAASPVSLPR TPRIANGIAT RLGSHAAVGA SAPSAPTAHP QPRPPQGPLA ENSTTRP00000001349/1-1478 AAASPVSLPR TPRIANGIAT RLGSHAAVGA SAPSAPTAHP QPRASQGSLA 951 1000 bmy_17360T0/1-1238 LPGPSYAGNS PLIGRISFIR ERPSPCNGRK IRVLRQKSDH GAYSQSPAIK ENSBTAP00000030640/1-1507 LPGPSHAGNS PVIGRISFIR ERPSPCNGRK IRVLRQKSDH GAYSQSPAIK BACU002362/1-1507 LPGPSYAGNS PLIGRISFIR ERPSPCNGRK IRVLRQKSDH GAYSQSPAIK ENSP00000393183/1-1078 LPGPSYAGNS PLIGRISFIR ERPSPCNGRK IRVLRQKSDH GAYSQSPAIK ENSTTRP00000001349/1-1478 LPGPSYAGNS PLIGRISFIR ERPSPCNGRK IRVLRQKSDH GAYSQSPAIK 1001 1050 bmy_17360T0/1-1238 KQLDRHLPSP PTLDSIITEY LREQHARCKN PVATCPPFSL FTPHQCPEPK ENSBTAP00000030640/1-1507 KQLDRHLPSP PTLDSIITEY LREQHARCKN PVATCPPFSL FTPHQCPEPK BACU002362/1-1507 KQLDRHLPSP PTLDSIITEY LREQHARCKN PVATCPPFSL FTPHQCPEPK ENSP00000393183/1-1078 KQLDRHLPSP PTLDSIITEY LREQHARCKN PVATCPPFSL FTPHQCPEPK ENSTTRP00000001349/1-1478 KQLDRHLPSP PTLDSIITEY LREQHARCKN PVATCPPFSL FTPHQCPEPK 1051 1100 bmy_17360T0/1-1238 QRRQAPINFT SRLNRRASFP KYGGVDGGCF DRHLIFSRFR PISVFREANE ENSBTAP00000030640/1-1507 QRRQAPINFT SRLNRRASFP KYGGVDGGCF DRHLIFSRFR PISVFREANE BACU002362/1-1507 QRRQAPINFT SRLNRRASFP KYGGVDGGCF DRHLIFSRFR PISVFREANE ENSP00000393183/1-1078 QRRQAPINFT SRLNRRASFP KYGGVDGGCF DRHLIFSRFR PISVFREANE ENSTTRP00000001349/1-1478 QRRQAPINFT SRLNRRASFP KYGGVDGGCF DRHLIFSRFR PISVFREANE 1101 1150 bmy_17360T0/1-1238 DESGFTCCAF SARERFLMLG TCTGQLKLYN ---------- ---------- ENSBTAP00000030640/1-1507 DESGLTCCAF SARERFLMLG TCTGQLKLYN VFSGQEEASY NCHNSAITHL BACU002362/1-1507 DESGFTCCAC SARERFLMLG TCTGQLKLYN VFSGQEEASY NCHNSAITHL ENSP00000393183/1-1078 DESGFTCCAF SARERFLMLG TCTGQLKLYN VFSGQEEASY NCHNSAITHL ENSTTRP00000001349/1-1478 DESGFTCCAF SARERFLMLG TCTGQLKLYN VFSGQEEASY NCHNSAITHL 1151 1200 bmy_17360T0/1-1238 ----DGSLLL TSATWSQPLS ALWGMKSVFD MKHSFTEDHY VEFSKHSQDR ENSBTAP00000030640/1-1507 EPSRDGSLLL TSATWSQPLS ALWGMKSVFD MKHSFTEDHY VEFSKHSQDR BACU002362/1-1507 EPSRDGSLLL TSATWSQPLS ALWGMKSVFD MKHSFTEDHY VEFSKHSQDR ENSP00000393183/1-1078 EPSRDGSLLL TSATWSQPLS ALWGMKSVFD MKHSFTEDHY VEFSKHSQDR ENSTTRP00000001349/1-1478 EPSRDGSLLL TSATWSQPLS ALWGMKSVFD MKHSFTEDHY VEFSKHSQDR 1201 1250 bmy_17360T0/1-1238 VIGTKGDIAH IYDIQTGNKL LTLFNPDLAN NYKRNCATFN PTDDLVLNDG ENSBTAP00000030640/1-1507 VIGTKGDIAH IYDIQTGNKL LTLFNPDLAN NYKRNCATFN PTDDLVLNDG BACU002362/1-1507 VIGTKGDIAH IYDIQTGNKL LTLFNPDLAN NYKRNCATFN PTDDLVLNDG ENSP00000393183/1-1078 VIGTKGDIAH IYDIQTGNKL LTLFNPDLAN NYKRNCATFN PTDDLVLNDG ENSTTRP00000001349/1-1478 VIGTKGDIAH IYDIQTGNKL LTLFNPDLAN NYKRNCATFN PTDDLVLNDG 1251 1300 bmy_17360T0/1-1238 VLWDVRSAQA IHKFDKFNMN ISGVFHPNGL EVIINTEIWD LRTFHLLHTV ENSBTAP00000030640/1-1507 VLWDVRSAQA IHKFDKFNMN ISGVFHPNGL EVIINTEIWD LRTFHLLHTV BACU002362/1-1507 VLWDVRSAQA IHKFDKFNMN ISGVFHPNGL EVIINTEIWD LRTFHLLHTV ENSP00000393183/1-1078 VLWDVRSAQA IHKFDKFNMN ISGVFHPNGL EVIINTEIWD LRTFHLLHTV ENSTTRP00000001349/1-1478 VLWDVRSAQA IHKFDKFNMN ISGVFHPNGL EVIINTEIWD LRTFHLLHTV 1301 1350 bmy_17360T0/1-1238 PALDQCRVVF NHTGTVMYGA MLQADDEDDL MEERMKSPFG SSFRTFNATD ENSBTAP00000030640/1-1507 PALDQCRVVF NHTGTVMYGA MLQADDEDDL LEERMKSPFG SSFRTFNATD BACU002362/1-1507 PALDQCRVVF NHTGTVMYGA MLQADDEDDL MEERMKSPFG SSFRTFNATD ENSP00000393183/1-1078 PALDQCRVVF NHTGTVMYGA MLQADDEDDL MEERMKSPFG SSFRTFNATD ENSTTRP00000001349/1-1478 PALDQCRVVF NHTGTVMYGA MLQADDEDDL LEERMKSPFG SSFRTFNATD 1351 1400 bmy_17360T0/1-1238 YKPIATIDVK RNIFDLCTDT KDCYLAVIEN QGSMDSLNMD TVCRLYEVGR ENSBTAP00000030640/1-1507 YKPIATIDVK RNIFDLCTDT KDCYLAVIEN QGSMDALNMD TVCRLYEVGR BACU002362/1-1507 YKPIATIDVK RNIFDLCTDT KDCYLAVIEN QGSIESLNMD TVCRLYEVGR ENSP00000393183/1-1078 YKPIATIDVK RNIFDLCTDT KDCYLAVIEN QGSMDALNMD TVCRLYEVGR ENSTTRP00000001349/1-1478 YKPIATIDVK RNIFDLCTDT KDCYLAVIEN QGSMDSLNMD TVCRLYEVGR 1401 1450 bmy_17360T0/1-1238 QRLAEDEDEE EDQ------- ---------- ---------- ---------- ENSBTAP00000030640/1-1507 QRLAEDEDEE EDQEEEEQEE EDDDEDDDDT DDLDELDTDQ LLEAELEEDD BACU002362/1-1507 QRLAEDEDEE EDQEEEEQEE EDDDEDDDDT DDLDELDTDQ LLEAELEEDD ENSP00000393183/1-1078 QRLAEDEDEE EDQEEEEQEE EDDDEDDDDT DDLDELDTDQ LLEAELEEDD ENSTTRP00000001349/1-1478 QRLAEDEDEE EDQEEEEQEE EDDDEDDDDT DDLDELDTDQ LLEAELEEDD 1451 1500 bmy_17360T0/1-1238 ---------- ---------- ---------- ---------- -IFAIGVFAT ENSBTAP00000030640/1-1507 NNENAGEDGD NDFSPSDEEL ANLLEEGEDA EDEDSDADEE VELILGDTDS BACU002362/1-1507 NNENAGEDGD NDFSPSDEEL ANLLEEGEDG EDEDSDADEE VELILGDTDS ENSP00000393183/1-1078 NNENAGEDGD NDFSPSDEEL ANLLEEGEDG EDEDSDADEE VELILGDTDS ENSTTRP00000001349/1-1478 NNENAGEDGD NDFSPSDEEL ANLLEEGEDG EDEDSDADEE VELILGDTDS 1501 1550 bmy_17360T0/1-1238 C--------- ------ ENSBTAP00000030640/1-1507 SDNSDLEDDI ILSLNE BACU002362/1-1507 SDNSDLEDDI ILSLNE ENSP00000393183/1-1078 SDNSDLEDDI ILSLNE ENSTTRP00000001349/1-1478 SDNSDLEDDI ILSLNE