KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:40:56 2014 Check: 00 .. Name: ENSP00000364348/1-1701 Len: 1912 Check: 5909 Weight: 1.00 Name: bmy_02834T0/1-1493 Len: 1912 Check: 1 Weight: 1.00 Name: ENSBTAP00000030735/1-854 Len: 1912 Check: 6717 Weight: 1.00 Name: ENSTTRP00000000139/1-1825 Len: 1912 Check: 4480 Weight: 1.00 // 1 50 ENSP00000364348/1-1701 ---------- ---------- ---------- ---------- ---------- bmy_02834T0/1-1493 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030735/1-854 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000139/1-1825 VWPSDHVQPG ATCHPNQTLE MLRGLGIGMR AFHNFNYFLF FYNVLLGLGA 51 100 ENSP00000364348/1-1701 ---------- ---------- ---------- ---------- ---------- bmy_02834T0/1-1493 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030735/1-854 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000139/1-1825 CLSRLLISCI LGTWLIARID RTILQSGCER ADMGFSAWIG MLYVDHYHTN 101 150 ENSP00000364348/1-1701 ---------- ---------- ---------- ---------M RGGENRPPAR bmy_02834T0/1-1493 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030735/1-854 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000139/1-1825 PVLVSFCHIL ITGHRERRLQ QAIKYWYPNQ SAESPRICAW RGWESRPSQV 151 200 ENSP00000364348/1-1701 VQSSSEELEL RHQSLDAFPG RRLPGR-GIQ PAAKMSSVGK VTQVPNGKAY bmy_02834T0/1-1493 ---------- ---------- MPRQCLLGAH PQGILESVG- ---------- ENSBTAP00000030735/1-854 ---------- ---------- QRLPCR-GVQ LDAKMSSVWK VTQIPSGKVY ENSTTRP00000000139/1-1825 PVRFLPEPGL RDQTP----- GQLPCR-GVQ PEAKMSSVGK VTQIPSGNVY 201 250 ENSP00000364348/1-1701 QQIFQAEVQL VHSLAATRKR AAERSVTLKS GRIPMMKKVE TPEGEVMSPR bmy_02834T0/1-1493 PDYYQFPGSL WRPRVTLEGS SAGRG----G GRVLVIVFLC LC-------- ENSBTAP00000030735/1-854 QQIFEAEVQL VRSLASSRKR AVERSMIPKD SRKPLVKKVD VCEGEMMSPR ENSTTRP00000000139/1-1825 QQIFEAEVQL VHSLASTRKR TMERSMAPKD GRKLLMTKMD IREGEMMSPR 251 300 ENSP00000364348/1-1701 QQKWMHSLPN DWIMENPVLH REKERAKREK ARESENTIAA REVRGLMDTI bmy_02834T0/1-1493 ---------- ---------L REKEIAKKEK AQESENSIAA REVRGLPDTA ENSBTAP00000030735/1-854 QRKWMRSLPN DWTTENPVLY REKQIAKKEK AQESENAIDA REVRGLTDTI ENSTTRP00000000139/1-1825 QRKWAHSLPN DWVTENPVLY REKEIAKKEK AQESENSTAA REVRGLPDAP 301 350 ENSP00000364348/1-1701 VPEKISTSTF QRQAEHKRKS YESALASFQE EIAQVGKEME PLIVDTGGLF bmy_02834T0/1-1493 VPERISTITL QGRGDYKRRG CESALASFKE EIAQIGMEME PLILEPGALL ENSBTAP00000030735/1-854 VPERISSTTF QKQGDSKRRG YESALASFKE EIAQIGMEME PLILEPGALL ENSTTRP00000000139/1-1825 VPERFSTITL QGREDYKRRS YESALASFKE EIDQIGMEME PLIVEPGARL 351 400 ENSP00000364348/1-1701 LKKLTESDEE MNRLFLKVEN DTNLEDYTI- -------QAL LELWDKVAGR bmy_02834T0/1-1493 LKKLAESDED INNLFEKVEN DSNLEDYTIQ PDPNFLAQTL LELWDQVAEK ENSBTAP00000030735/1-854 LKKLAESDED VNNLFKKVEN DSNLEDYTI- -------QTL LELRDQVAEK ENSTTRP00000000139/1-1825 LKKLAESDED INNLFEKVEN DSNLEDYTI- -------QTL LELRDQVAEK 401 450 ENSP00000364348/1-1701 LLLRKQEIKE LDEALHSLEF SRTDKLKSVL KKYAEVIEKT SYLMRPEVYR bmy_02834T0/1-1493 FLLQKQEIKE LDKTLHSLEF SRADKLKSVL KKYVEIIEKT SYLMQPDVYR ENSBTAP00000030735/1-854 FLLQKQEIKE LDETLHSLEF SRVDKLKSVL KKYVEIIEKT SYLMQPDVYR ENSTTRP00000000139/1-1825 FLLQKQEIKE LDKTLHSLEF SRADKLKSVL KKYVEIIEKT SYLMQPDVYR 451 500 ENSP00000364348/1-1701 LINEEAMVMN YALLGNRKAL AQLFVNLMES TLQQELDSRH RWQGLVDTWK bmy_02834T0/1-1493 LINKEAMIIN HALLGNRRAL AQLFVNLMEA TLQQELDGHR RWQGLVDAWK ENSBTAP00000030735/1-854 LINKEAMIIN HALLGNRRAL AKLFVNLMEA RLQQELDSHR RWQGLMDAWK ENSTTRP00000000139/1-1825 LINKEATIIN HALLGNRRAL AQLFVNLMEA ALQQELDGHR RWQGLVDAWK 501 550 ENSP00000364348/1-1701 ALKKEALLQS F--------- ---------- ---------- ---SEFMASE bmy_02834T0/1-1493 ALKKEDLVQG FRVLNVLTMG LIPSLPSTLP LLSSAWCRRV WTPSEFMASE ENSBTAP00000030735/1-854 ALKKEYLVQD F--------- ---------- ---------- ---SEFMASE ENSTTRP00000000139/1-1825 ALKKEDLVQG F--------- ---------- ---------- ---SEFMASE 551 600 ENSP00000364348/1-1701 SIHTPPAVTK ELEVMLKTQN VLQQRRLKHL CTICDLLPPS YSKTQLTEWH bmy_02834T0/1-1493 RIQTPPAVKM ELETMFKNQS ALQQNRLDHL CTICDLLPPN YSKAQLTEWR ENSBTAP00000030735/1-854 RIQTPPAVKK ELETMMKNQS SLQQKRLDHL CTICDLLPPN YSKAQLTEWR ENSTTRP00000000139/1-1825 RIQTPPAVQM ELETMFKNQS ALQQKRLDHL CTICDLLPPN YSKAQLTEWR 601 650 ENSP00000364348/1-1701 SSLNSLNKEL ----DTYHVD CMMRIRLLYE KTWQECLMHV QNCKKQLLDW bmy_02834T0/1-1493 STLNSLNKHL ----DAYHVD CMMRVRLQYE KTWQECLAQV QKCK------ ENSBTAP00000030735/1-854 SSLDSLNKHI ATHGDAYHMD CMMRIRLQYE KIWQECLAQV QKCRKQLLDW ENSTTRP00000000139/1-1825 STLNSLNKHL ----DAYHVD CMMRIRLQYE KTWQECLAQV QKCKKQLLDW 651 700 ENSP00000364348/1-1701 KAFTEEEAET LVNQFFFQMV GALQGKVEED LELLDKSFET LADQTEWQSS bmy_02834T0/1-1493 ---------- ---------- ---------- -----KSFEA VAKQTEWQSS ENSBTAP00000030735/1-854 KAFTEEEAES LVSPSFFQMV GCLQSKVEEE LEVLDKSFET VAKQTEQQSS ENSTTRP00000000139/1-1825 KAFTEEEAES LVSPSFFQMV GSLQSKAEEE LEALGKSFEA VAKQTERQNS 701 750 ENSP00000364348/1-1701 HLFKYFQEVV QLWEAHQSEL LVQELELEKR MEQHRQKHSL ESQVQEAHLD bmy_02834T0/1-1493 DLFSYFQEAV QLWEVHRSML SMQEVELEKR MEQRRQKHSH ESQVRARH-- ENSBTAP00000030735/1-854 DLFSYFQEAV NLWETHQSVL LMQEMELEKR MEQQRQKHRR ENQAQEAHLD ENSTTRP00000000139/1-1825 DLFSYFQEAV QLWEVHRSML LMQELELEKR MEQQRQKHSR ESQAQEAHLD 751 800 ENSP00000364348/1-1701 RLLDQLRQQS DKETLAFHLE KVKDYLKNMK SRYECFHTLL TKEVMEYPAI bmy_02834T0/1-1493 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030735/1-854 KLLDQLRQQS YENNLKSHLE KAKDFLKNMQ CRYEAFHGLL TKEVMEYPVI ENSTTRP00000000139/1-1825 KLLDQLRQQS CENTLKLHLV KAKDFLKNMK CRYESSHGLL TKEVMEYPAI 801 850 ENSP00000364348/1-1701 MLKELNSYSS ALSQYFFVRE IFEQNLAGEV IFKFRQPEAH EKPSQKRVKK bmy_02834T0/1-1493 ---------- ---------- ---------- ------PEPH EKQFQERMRK ENSBTAP00000030735/1-854 ILKELNSYSS HLSRHFCVRE IFEQNLEGEV IFQLREPEPH EKQFQKRMRR ENSTTRP00000000139/1-1825 ILKELNSYSS TLSRHFCVRE IFEQNLEGEV IFRLRAPEPH EKQFQERRRK 851 900 ENSP00000364348/1-1701 LRKKQGSKED MTRSEESISS GTSTARSVEE VEEENDQEME SFITEEV-LG bmy_02834T0/1-1493 LRGKQRPKAD TSKGEESVSR ETSSLRPAEE XEEEEXREIE SPTTQEVVVX ENSBTAP00000030735/1-854 PRGKRRSKAN ARKGDESNSG RTSSLKPAEE IEEEEDQEAE SSTTQEVAVS ENSTTRP00000000139/1-1825 LRGKQRPKAD ASKGEESLSR GTSSLRPVEE IEEVEDQEIE SATTQEVVVS 901 950 ENSP00000364348/1-1701 QQKKSPLHAK MDESKEGSIQ GLEEMQVERE GSLNPSLNEE NV----KGQG bmy_02834T0/1-1493 PQEKSVLSEE MDESREDSIP GXEEMQVERD SSLKSPPNQA NMMVHEEEEE ENSBTAP00000030735/1-854 PQEKSVLSEE MDESREDSIS GLEEIQVERD SSLRSPPNQA SVIVHEEEEE ENSTTRP00000000139/1-1825 PQEKSVLSEE MDESRGDSIP GLEKMHVERD SSLKSPPNQA NMMVHE---- 951 1000 ENSP00000364348/1-1701 EKKEESEEED EKEEEEEEEK LEEEKEEKEA QEEQESLSVG E--------- bmy_02834T0/1-1493 EKKEKVEEER EEEEEEEEEE EEKEEEEEEE KEERESSSMD EVGQQRVHSW ENSBTAP00000030735/1-854 EKKEKVEEER EEEEVEEEEE EEEEEKEEEE -EERRSLSVD E--------- ENSTTRP00000000139/1-1825 --REREKEXX XXXXXXXXXX XXXXXXXXXX -XXXXXXXXX X--------- 1001 1050 ENSP00000364348/1-1701 EEDKEEGLEE IYYEDMESFT ISSGNTYFVF VPLE-EEHCR KSHSTFSAMF bmy_02834T0/1-1493 VRAQEESLGA VSHEEMESFT TSSGNTYFVF LPLEQEESSK RPHSNLSAIL ENSBTAP00000030735/1-854 VKAQEESLGE ISQEEMEFFT TSSGNTYFVF LPLKQEENSK TPHSNLPATL ENSTTRP00000000139/1-1825 VRAQEESLGA VSHEEMESFT TSSGNTYFVF LPLEQEESSK RPHSNLSAIL 1051 1100 ENSP00000364348/1-1701 INDTSSAKFI EQVTIPSRLI LEIKKQLRAG FFEHLEKWFD QCSLNTRVTV bmy_02834T0/1-1493 FNDTSSAKVL EQVIIPSRLV LEIKKQLRAG FFEHLEKWFD QCALNARVIV ENSBTAP00000030735/1-854 FKDISSARVL EEVIIPSRLV LEIKK----- ---------- ---------- ENSTTRP00000000139/1-1825 FNDTSSAKVL EQVIIPSRLV LEIKKQLRAG FFEHLEKWFD QCALNARVIV 1101 1150 ENSP00000364348/1-1701 ATKINELDSE LELHLHLHQP RAQQIEKDIH NVRAAELLLH QEQLDSHCAG bmy_02834T0/1-1493 ATKIDELDSE LELRLHLHQP RAQFIEKDIH NVRAAELLLH QERLDSHCAG ENSBTAP00000030735/1-854 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000139/1-1825 ATKIDELDSE LELRLHLHQP RAQLIEKDIH NVRAAELLLH QERLDSHCAG 1151 1200 ENSP00000364348/1-1701 VTETLKKKRL MFCQFQEEQN VRSKNFRLKI YDMEHIFLNA TRSQKLVTLS bmy_02834T0/1-1493 VMETLRKERM MFCQFQEEQN MRSRNFRRKI YDMEHIFLNA TXSQKLVTLS ENSBTAP00000030735/1-854 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000139/1-1825 VMEMLRKERR MFCQFQEEQN MRSKDFQRKI CDMEHIFLNA TKSQKLVTLS 1201 1250 ENSP00000364348/1-1701 NTLHQELLSY VDVTQVSLRS FRQYLEESLG KLRYSNIEFI KHCRLFSEGG bmy_02834T0/1-1493 STLHRELLSY VDVVQVSLRS FRQYLEESLG KLRYTNVELV RHCRLFSEGG ENSBTAP00000030735/1-854 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000139/1-1825 STLHQELLSY VDVVQVSLRS FRQYLEESLG KLRYTNVEFV RHCXXXXXXX 1251 1300 ENSP00000364348/1-1701 NFSPKEINSL CSRLEKEAAR IELVESVIML NMEKLENEYL DQANDVINKF bmy_02834T0/1-1493 NFSSEEIDSL CHRLZKEAAR IEFVENLIMV NMEKMESEYL DQANDVINKF ENSBTAP00000030735/1-854 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000139/1-1825 XXXXXXXXXX XXXXEKEAAR IEFVE-IIMI SMEKMESEYL DQANDIINKF 1301 1350 ENSP00000364348/1-1701 ESKFHNLSVD LIFIEKIQRL LTNLQVKIKC QVAKSNSQTN GLNFSLQQLQ bmy_02834T0/1-1493 ESRFHNLSVD LIFIEKIQRL LTNLQVAK-- ----SNLQTD GLNYSLEQLQ ENSBTAP00000030735/1-854 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000139/1-1825 ESKFHNLSVD LIFIEKIQRL LTNLQVKIKC ----EQFHQD GLNSSXXXXX 1351 1400 ENSP00000364348/1-1701 NKIKTCQESR GEKTTVTTEE LLSFVQTWKE KLSQRIQYLN CSLDRVSMTE bmy_02834T0/1-1493 SKVQMCRSSK XDKKIVTTED LLGLVRTWKE KLSPRIQYLN CKLDVVSVTQ ENSBTAP00000030735/1-854 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000139/1-1825 XXXXXXXXXX XXXXIVTTED LLGLVRTWKE KLSPRIQYLN CKLNMVSVTQ 1401 1450 ENSP00000364348/1-1701 LVFTNTILKD QEEDSDILTS SEALEEEAKL DVVTPESFTQ LSRVGKPLIE bmy_02834T0/1-1493 VVFT------ --VEGDILVS SEAHEEEAKV DMVTPESFTQ PSRMGKSMIE ENSBTAP00000030735/1-854 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000139/1-1825 VVLTDNILTN LVVESDILVS SEAHEEEAKV DIVTPESFTQ PSRMGKSLIE 1451 1500 ENSP00000364348/1-1701 DPAVDVIRKL LQLPNTKWPT HHCDKDPSQT GRGAWACGSR GSSEAGAGGA bmy_02834T0/1-1493 DPAVEVVRRI LQFPDSKCPT QQCDKERSQT ---------- ---------- ENSBTAP00000030735/1-854 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000139/1-1825 DPAVEVVRRI LQFPDSKCPT QQCDKERSQT GRGK---RSQ GTSGGAAGGA 1501 1550 ENSP00000364348/1-1701 VCSPPVLCSC PGPSSPKGFK RHRCQPENSG KKAVPSASAT SAG------- bmy_02834T0/1-1493 ---------- -------GLK RLRNRAEHSV KKGLSTASAT LAASLQSTDP ENSBTAP00000030735/1-854 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000139/1-1825 TRSPWILCSC PGCSSPKGLK RLRSRVDNSV KKGLSTASAT LAA------- 1551 1600 ENSP00000364348/1-1701 ----SFTPHP KPNKMERKYR VLGDKPPPAA EDFKGIILTL LWESSENLLT bmy_02834T0/1-1493 PLPHSITRHA KPNRLDRKYQ VLGDKPPPPA EDFKGIILSL LWESNEHLLT ENSBTAP00000030735/1-854 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000139/1-1825 ----SITRYT KPNRLDRKYQ VLGDKPPPPA EDFKGIILSL LWESNEHLLT 1601 1650 ENSP00000364348/1-1701 VAEEFYRKEK RPVTRPDCMC DTFDQCAENI SKKILEYQSQ ANKYHNSCLI bmy_02834T0/1-1493 VVEEFYRKEK RSITRPDCMY ETFDQCTENI CRKILEYHSQ ADEYHNSCLI ENSBTAP00000030735/1-854 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000139/1-1825 MVEEFYHKDK HSITRPDCMY GTFDQCAENI CRKILVYHSQ ADEYHNSCLI 1651 1700 ENSP00000364348/1-1701 ELRIQIRRFE ELLPQVCWLV MENFKEHHWK -KFFTSVKEI RGQFEEQQKR bmy_02834T0/1-1493 ELRAQMRRFE ELLPQVCWLV MENFKEHHWK -KYCTSTKET RGQFSNYQEQ ENSBTAP00000030735/1-854 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000139/1-1825 ELRAQM-RFE ELLP-VCWLV MENFKEHHWK XXXXXXXXXX XXXXXXXXXX 1701 1750 ENSP00000364348/1-1701 LEKRKDKNAQ KLHLNLGHPV HFQEMESLHL SEEERQEELD SMIRMNKEKL bmy_02834T0/1-1493 LERRKDENAQ KLHPNLGHPA HLQEMESLCQ VEEKRQEDLD TLIAVTREKL ENSBTAP00000030735/1-854 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000139/1-1825 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XLIAVTREQL 1751 1800 ENSP00000364348/1-1701 EECTRRNGQV FITNLATFTE KFLLQLDEVV TIDDVQVARM EPPKQKLSML bmy_02834T0/1-1493 EEFTRKYSRF FIASLAXFTE KFLLQLDEVV TIDDVQVASM ---------- ENSBTAP00000030735/1-854 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000139/1-1825 EEFTRKYSRF FIASLATFTE KFLLQLDEVV TTDDVQVAKM EPPKQKTSIL 1801 1850 ENSP00000364348/1-1701 IRRKLAGLSL KEESEKPLIE RGSRKWPGIK PTEVTIQNKI LLQPTSSIST bmy_02834T0/1-1493 ---------- --CTTGLVPW PQGVKWPGIK PTEVTIQHKI LLRKTPSITT ENSBTAP00000030735/1-854 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000139/1-1825 IRRKLNGLSL EEESEKPLIE RGSRKWPGIK PTEVTIQHKI LLQKTPSITT 1851 1900 ENSP00000364348/1-1701 TKTTLGHLAA VEARDAVYLK YLASFEEELK RIQDDCTSQI KEAQRWKDSW bmy_02834T0/1-1493 TKTTLGHLAS VEARDAVYLK YLASFEEELK KIQDDYTLQV KEAQRWKDSW ENSBTAP00000030735/1-854 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000139/1-1825 TKTTLGHLAS VEARDAIYLK YLASLEEELK KIQDDSTLQV KEAQRWKDSW 1901 1950 ENSP00000364348/1-1701 KQSLHTIQGL YV bmy_02834T0/1-1493 KRSVHTIQGL YL ENSBTAP00000030735/1-854 ---------- -- ENSTTRP00000000139/1-1825 KRSVHTIQDL YL