KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:40:57 2014  Check: 00 ..

 Name: ENSP00000464258/1-139     Len:    215  Check:  7389  Weight:  1.00
 Name: bmy_00434T0/1-204         Len:    215  Check:  4178  Weight:  1.00
 Name: ENSTTRP00000007150/1-206  Len:    215  Check:  198  Weight:  1.00
 Name: ENSBTAP00000030774/1-193  Len:    215  Check:  1830  Weight:  1.00

//


                          1                                                   50
ENSP00000464258/1-139     MPWRAGNGVG LEAQAGTQEA -----GPEE- --------YC QEELGAEEEM 
bmy_00434T0/1-204         MPRSAGSAE- -EAEAGAEEA GAEESGPEE- --------SH PEESGSQQEM 
ENSTTRP00000007150/1-206  MLGRAGNAE- -EAETGAEEA -DGAGGAEQA DAEQCVSVSH TEELGYQQEM 
ENSBTAP00000030774/1-193  MPRKAGDAE- -EAEAGAEEA ---------- ---------S AEDPGAEREM 


                          51                                                 100
ENSP00000464258/1-139     AARAAWPVLR SVNSRELSRI IICNHSPRIV LPVWLNYYGK LLPYLTLLPG 
bmy_00434T0/1-204         EGGRPRPMLR SVNTREPSQV IFCNRSPRVV LPVWLNFDGE PQPYPTLPPG 
ENSTTRP00000007150/1-206  EAGRPRPMLR SVNTREPSQV IFCNRSPRVV LPVWLNFDGE PQPYPTLPPG 
ENSBTAP00000030774/1-193  EAGRLRPVLR SVNTREPSQV IFCNRSPRVV LPVWLNFDGE PQPYPTLPPG 


                          101                                                150
ENSP00000464258/1-139     RDFRIHNFRS HPWLFRDART HDKLLVNQTE LFVPSSNVNG QPVFANITL- 
bmy_00434T0/1-204         TGRRIHSYRG HLWLFRDAGT SDGLLVNQTE LFVPSLNVDG QPIFANITLP 
ENSTTRP00000007150/1-206  TGRRIHSYRG HLWLFRDAGT SDGLLVNQTE LFVPSLNVDG QPIFANITLP 
ENSBTAP00000030774/1-193  TGRRIHSYRG HLWLFRDAGT SDGLLVNQTE LFVPSLNVDG QPIFANITLP 


                          151                                                200
ENSP00000464258/1-139     ------QCIP ---------- ---------- ---------- ---------- 
bmy_00434T0/1-204         VYTLKERCLQ VVRSLVKPED YRRLDIARSL YEDLEDHPNV WKDLERLTQK 
ENSTTRP00000007150/1-206  VYTLKERCLQ VVRSLVKPED YRRLDIARSL YEDLEDHPNV WKDLERLTQE 
ENSBTAP00000030774/1-193  VYTLKERCLQ VVRSLVKPED YRRLDIVRSL YEDLEDHPNV QKDLVRLTQE 


                          201                                                250
ENSP00000464258/1-139     ---------- ----- 
bmy_00434T0/1-204         HIENQRMAEE TEDFS 
ENSTTRP00000007150/1-206  HIENQRMGD- ----- 
ENSBTAP00000030774/1-193  HIESQRMAGE IEDV-