KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:40:57 2014 Check: 00 .. Name: ENSP00000301825/1-529 Len: 530 Check: 783 Weight: 1.00 Name: ENSBTAP00000030794/1-430 Len: 530 Check: 2275 Weight: 1.00 Name: ENSTTRP00000006336/1-527 Len: 530 Check: 4076 Weight: 1.00 Name: bmy_15096T0/1-447 Len: 530 Check: 9085 Weight: 1.00 Name: BACU015650/1-527 Len: 530 Check: 7827 Weight: 1.00 // 1 50 ENSP00000301825/1-529 MFTVLTRQPC EQAGLKALYR TPTIIALVVL LVSIVVLVSI TVIQIHKQEV ENSBTAP00000030794/1-430 MFTVLTRQPC EQAGLKVLSR TPAIIALVVL FLSIVVLMAI TLIQTHQKEV ENSTTRP00000006336/1-527 MFTVLTRQPC EQAGLKALSR ISAIITLVVL LLSIVVLVAV TLIQIHQKEV bmy_15096T0/1-447 MFTVLTRQPC EQAGLKALSR ISAIITLVVL LLSIVVLVAV TLIQIHQKEV BACU015650/1-527 MFTVLTRQPC EQAGLKALSR ISAIITLVFL LLSIVVLVAV TLIQIHQKEV 51 100 ENSP00000301825/1-529 LPPGLKYGIV LDAGSSRTTV YVYQWPAEKE NNTGVVSQTF KCSVKGSGIS ENSBTAP00000030794/1-430 LFPGPKYGIV LDAGSSRTTI YVYQWPAEKA NNTGVVSQSF KCNVKGSGIS ENSTTRP00000006336/1-527 LLPGLKYGIV LDAGSSRTTV YVYQWPAEKE NNTGVVSQTF KCSVKGSGIS bmy_15096T0/1-447 LLPGLKYGIV LDAGSSRTTV YVYQWPGEKE NNTGVVSQTF KCSVKGSGIS BACU015650/1-527 LLPGLKYGIV LDAGSSRTTV YVYQWPGEKE NNTGVVSQTF KCSVKGSGIS 101 150 ENSP00000301825/1-529 SYGNNPQDVP RAFEECMQKV KGQVPSHLHG STPIHLGATA GMRLLRLQNE ENSBTAP00000030794/1-430 NYAENPQDAP KAFEDCMQKV KGHIPVSLHG STCVYLGATA GMRLLRLQNE ENSTTRP00000006336/1-527 SYGENPQDAP KAFEDCMQEV KGHIPAHLHG STCIYLGATA GMRLLRLQNE bmy_15096T0/1-447 SYGENPQDAP KAFEDCMQKV KGHIPAHLHG STCIYLGATA GMRLLRLQNE BACU015650/1-527 SYGENPQDAP KAFEDCMQKV KGHIPAHLHG STCIYLGATA GMRLLRLQNE 151 200 ENSP00000301825/1-529 TAANEVLESI QSYFKSQPFD FRGAQIISGQ EEGVYGWITA NYLMGNFLEK ENSBTAP00000030794/1-430 TAANEVLESI ENYFKSQPFD FRDAQIISGQ EEGIYGWITA NYLMGNFLEK ENSTTRP00000006336/1-527 TAANEVLASI QNYFESQPFD FRDAQIISGQ EEGIYGWITA NYLMGNFLEK bmy_15096T0/1-447 TAANEVLASI QNYFESQPFD FRDAQIISGQ EEGIYGWITA NYLMGNFLEK BACU015650/1-527 TAANEVLASI QNYFESQPFD FRDAQIISGQ EEGIYGWITA NYLMGNFLEK 201 250 ENSP00000301825/1-529 NLWHMWVHPH GVETTGALDL GGASTQISFV AGEK-MDLNT SDIMQVSLYG ENSBTAP00000030794/1-430 SLWHMWVHPS GKETTGALDL GGASTQISFA AEEK-VRLNT SDIMKVTLYG ENSTTRP00000006336/1-527 SLWHMWVHPN GKETTGALDL GGASTQISFA VEEN-VGLNT SDIVKVSLYG bmy_15096T0/1-447 SLWHMWVHPN GKETTGALDL GGASTQISFA VEEKNVGLNT SDIVKVSLYG BACU015650/1-527 SLWHMWVHPN GKETTGALDL GGASTQISFA VEEKNVGLNT SDIVKVSLYG 251 300 ENSP00000301825/1-529 YVYTLYTHSF QCYGRNEAEK KFLAMLLQNS PTKNHLTNPC YPRDYSISFT ENSBTAP00000030794/1-430 YEYTLYTHSF QCYGRNEAEK RFLATLLQDY TTETTLTNPC YPQNYITTFT ENSTTRP00000006336/1-527 YEYTLYTHSF QCYGRNEAEK RFLAILLQXX XXXXXXXXXX XXXXXXXXXX bmy_15096T0/1-447 YEYTLYTHSF QCYGRNEAEK RFLAILLQNY TTETTFANPC YPRNYKTAFT BACU015650/1-527 YEYTLYTHSF QCYGRNEAEK RFLAILLQNY TTETTFANPC YPRNYKTAFT 301 350 ENSP00000301825/1-529 MGHVFDSLCT VDQRPESYNP NDVITFEGTG DPSLCKEKVA SIFDFKACHD ENSBTAP00000030794/1-430 EAQVFGSLCT EDLRPERYNP NNTITFEGTG DPSLCREKVA SLFNFSACHD ENSTTRP00000006336/1-527 XXHVFGSLCT EDLRPESYDP NNIITFEGTG DPSLCREKVA SLFNFSACHD bmy_15096T0/1-447 EAHVFGSLCT EDLRPESYDP NNNITFEGTG DPSLCREKVA SLFNFSACHD BACU015650/1-527 EAHVFGSLCT EDLRPESYDP NNNITFEGTX XXXXXXXXXX XXXXXXXXXX 351 400 ENSP00000301825/1-529 QETCSFDGVY QPKIKGPFVA FAGFYYTASA LNLSGSFSLD TFNSSTWNFC ENSBTAP00000030794/1-430 HEACSFDGVY QPRVKGSFVA FAGFYYTANA FNLSGSFSLH AFNLSTWNFC ENSTTRP00000006336/1-527 REVCSFNGVY QPKVKRSFLA FAGFYYTASA FNLSGSFSLH TFNSSTWNFC bmy_15096T0/1-447 QEACSFNGVY QPKVKGSFV- ---------- ---------- ---------- BACU015650/1-527 ---XSFNGVY QPKVKGSFVA FAGFYYTASA FNLSGSFSLH TFNSSTWNFC 401 450 ENSP00000301825/1-529 SQNWSQLPLL LPKFDEVYAR SYCFSANYIY HLFVNGYKFT EETWPQIHFE ENSBTAP00000030794/1-430 SKNWNQ---- ---------- ---------- ---------- ---------- ENSTTRP00000006336/1-527 SQNWGKLPLL LPG-DEEYAR SYC-SAHYIY HLLVNGYKFT ENTWPQIHFK bmy_15096T0/1-447 ---------- ---------- ---------- ---------- ---------- BACU015650/1-527 SQNWGKLPLL LPRFDEEYAR SYCFSAHYIY HLLVNGYKFT EETWPQIHFK 451 500 ENSP00000301825/1-529 KEVGNSSIAW SLGYMLSLTN QIPAESPLIR LPIEPPVFVG TLAFFTAAAL ENSBTAP00000030794/1-430 ---------- ---------- ---------- ---------- --------EM ENSTTRP00000006336/1-527 KEVGNSSIAW SLGYMLSLTN QIPAESPLIR LPIKPSAFMG TLTFFTAVAL bmy_15096T0/1-447 --VGNSSIAW SLGYMLSLTN QIPAESPLIR LPIKPSAFMG TLAFFAAVAL BACU015650/1-527 KEVGNSSIAW SLGYMLSLTN QIPAESPLIR LPIKPSAFMG TLAFFAAVAL 501 550 ENSP00000301825/1-529 LCLAFLAYLC SATRRKRHSE HAFDHAVDSD ENSBTAP00000030794/1-430 WCIYTMEYHS AIKKNEIVPF LAT------- ENSTTRP00000006336/1-527 LCLTYLMYLC VSSRNQRRSQ HALDNTVDSE bmy_15096T0/1-447 LCLTYLVYLC VSSRNQRRSQ HALDNTVDSE BACU015650/1-527 LCLTYLVYLC VSSRNQRRSQ HALDNTVDSE