KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:40:59 2014 Check: 00 .. Name: ENSTTRP00000005107/1-535 Len: 880 Check: 153 Weight: 1.00 Name: ENSP00000207870/1-536 Len: 880 Check: 3998 Weight: 1.00 Name: bmy_20314T0/1-574 Len: 880 Check: 8230 Weight: 1.00 Name: BACU014620/1-856 Len: 880 Check: 2604 Weight: 1.00 Name: ENSBTAP00000030820/1-490 Len: 880 Check: 2343 Weight: 1.00 // 1 50 ENSTTRP00000005107/1-535 MAEHTGRRCC LGWDFSTQQV KVVAVDAELN VFYEDSVHFD RDLLEFGTQG ENSP00000207870/1-536 MAEHAPRRCC LGWDFSTQQV KVVAVDAELN VFYEESVHFD RDLPEFGTQG bmy_20314T0/1-574 MAEHAARRCC LGWDFSTQQV KVVAVDAELN VFYEDSVLFD RDLLEFGTQG BACU014620/1-856 MAEHAARRCC LGWDFSTQQV KVVAVDAELN VFYEDSVLFD RDLLEFGTQG ENSBTAP00000030820/1-490 MAERAARHCC LGWDFSTQQV KVVAVDAELS VFYEDSVHFD RDLVEFGTQG 51 100 ENSTTRP00000005107/1-535 GVHVHEDGLT VTSPVLMWVQ ALDIILEKMK ASGFDFSQVL ALSGAGQQHG ENSP00000207870/1-536 GVHVHKDGLT VTSPVLMWVQ ALDIILEKMK ASGFDFSQVL ALSGAGQQHG bmy_20314T0/1-574 GVHVHEDGLT VTSPVLMWVQ ALDIILEKMK ASGFDFSQVL ALSGAGQQHG BACU014620/1-856 GVHVHEDGLT VTSPVLMWVQ ALDIILEKMK ASGFDFSQVL ALSGAGQQHG ENSBTAP00000030820/1-490 GVHVHKDGLT VTSPVLMWVQ ALDIILEKMK ASGFDFSQVL ALSGAGQQHG 101 150 ENSTTRP00000005107/1-535 SVYWKSGASQ VLASLSPDLL LHEQLQXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000207870/1-536 SIYWKAGAQQ ALTSLSPDLR LHQQLQDCFS ISDCPVWMDS STTAQCRQLE bmy_20314T0/1-574 SVYWKAGASQ VLSSLSPDLL LHEQLQACFS ISDCPVWMDS STTAQCRQLE BACU014620/1-856 SVYWKAGASQ VLTSLSPDLL LHEQLQACFS IRDCPVWMDS STTAQCRQLE ENSBTAP00000030820/1-490 SVYWKTGASQ VLTSLSPDLP LREQLQACFS ISNCPVWMDS STAAQCRQLE 151 200 ENSTTRP00000005107/1-535 XXXXXXXXXX XXXXXXXXXR FTGNQIAKLY QQNPEAYSHT ERISLVSSFA ENSP00000207870/1-536 AAVGGAQALS CLTGSRAYER FTGNQIAKIY QQNPEAYSHT ERISLVSSFA bmy_20314T0/1-574 ATVGGAQALS CLTGSRAY-- ---------- ---------- ERISLVSSFA BACU014620/1-856 ATVGGAQALS CLTGSRAY-- ---------- ---------- ERISLVSSFA ENSBTAP00000030820/1-490 AAVGGAQALS LLTGSRAYER FTGNQIAKIY QQNPEAYSHT ERISLVSSFA 201 250 ENSTTRP00000005107/1-535 ASLFLGSHSP IDYSDXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000207870/1-536 ASLFLGSYSP IDYSDGSGMN LLQIQDKVWS QACLGACAPH LEEKLSPPVP bmy_20314T0/1-574 ASLFLGSHSP IDYSDGSGMN LLRIQDKVWS QACLGACAPH LEEKLGPPVP BACU014620/1-856 ASLFLGSYSP IDYSDGSGMN LLRIQDKVWS QACLGACAPH LEEKLGLPVP ENSBTAP00000030820/1-490 ASLFLGSYSP VDYSDGSGMN LLQIQDKVWS QACLGACAPR LEEKLGRPVP 251 300 ENSTTRP00000005107/1-535 XXXXXGAISS YFVQRYGFPP GCKVVAFTGD NPASLAGMRL EEGDIAVSLG ENSP00000207870/1-536 SCSVVGAISS YYVQRYGFPP GCKVVAFTGD NPASLAGMRL EEGDIAVSLG bmy_20314T0/1-574 SCSVVGAISS YFVQRYGFPP GCKVVAFTGD NPASLAGMRL EEGDIAVSLG BACU014620/1-856 SCSVVGAISS YFVQRYGFPP GCKVVAFTGD NPASLAGMRL EEGDIAVSLG ENSBTAP00000030820/1-490 SCSIVGAISS YFVQRYGFPP ECKVVAFTGD NPASLAGMRL EEGDIAVSLG 301 350 ENSTTRP00000005107/1-535 TSDTLFLWLQ EPTPTLEGHI FCNPVDPQHY MALLCFKNGS LMREKIRDEL ENSP00000207870/1-536 TSDTLFLWLQ EPMPALEGHI FCNPVDSQHY MALLCFKNGS LMREKIRNES bmy_20314T0/1-574 TSDTLFLWLQ EPTPSLEGHI FCNPVDPQHY MALLCFKNGS LMREKIRDEL BACU014620/1-856 TSDTLFLWLQ EPTPTLEGHI FCNPVDPQHY MALLCFKNGS LMREKIRDEL ENSBTAP00000030820/1-490 TSDTLFLWLQ EPTPALEGHI FCNPVDPQHY MALLCFKNGS LMREKIRDES 351 400 ENSTTRP00000005107/1-535 ASSSWSEFSK ALQSTEMGNS GNLGFYFDVM EITPEIIGRH RFSAENHEVS ENSP00000207870/1-536 VSRSWSDFSK ALQSTEMGNG GNLGFYFDVM EITPEIIGRH RFNTENHKVA bmy_20314T0/1-574 ASSSWSEFSK ALQSTEMGNS GNLGFYFDVM EITPEIIGRH RFSAENHEVS BACU014620/1-856 ASSSWSEFSK ALQSTEMGNS GNLGFYFDVM EITPEIIGRH RFSAENHEVS ENSBTAP00000030820/1-490 ASGSWSKFSK ALQSTGMGNS GNLGFYFDVM EITPEIIGRH RFTAENHEVS 401 450 ENSTTRP00000005107/1-535 AFPWDVEIRA LIEGQFMAKK IHAEGLGYRV XXXXXXXXXX XXXXXXXXXX ENSP00000207870/1-536 AFPGDVEVRA LIEGQFMAKR IHAEGLGYRV MSKTKILATG GASHNREILQ bmy_20314T0/1-574 AFPWDVEIRA LIEGQFMAKK IHAEGLGYRV MPKTKILATG GASHNRDILQ BACU014620/1-856 AFPWDVEIRA LIEGQFMAKK IHAEGLGYRV MPKTKILATG GASHNRDILQ ENSBTAP00000030820/1-490 AFPQDVEIRA LIEGQFMAKK IHAEALGYRV MPKTKILATG GASHNRDILQ 451 500 ENSTTRP00000005107/1-535 VLADVFGTPV YVTDTA-SAC VGSAYRAFHG --LAAGTD-- ---------- ENSP00000207870/1-536 VLADVFDAPV YVIDTANSAC VGSAYRAFHG --LAGGTD-- ---------- bmy_20314T0/1-574 VLADVFGTPV YVIDTANSAC VGSAYRAFHG RSMDGGRC-- ---------- BACU014620/1-856 VLADVFGTPV YVIDTANSAC VGSAYRAFHV --LSSAPCNV GQPELGQSPP ENSBTAP00000030820/1-490 VLADVFGAPV YVIDTANSAC VGSAYRAFHG ---------- ---------- 501 550 ENSTTRP00000005107/1-535 ---------- -----VPFSE V--------- -VKLAPNPRL AAAPTP---- ENSP00000207870/1-536 ---------- -----VPFSE V--------- -VKLAPNPRL AATPSP---- bmy_20314T0/1-574 ---------- -----LWKRP CSWNRCALFR GCEVSPKSQI SCCPNP---- BACU014620/1-856 TCVPALEESG GHWVFLVVTP ASPLVATALT CEELWEEPRQ AQDPGPPPPS ENSBTAP00000030820/1-490 ---------- ---------- ---------- -------PSL LCL------- 551 600 ENSTTRP00000005107/1-535 ---------- ------GASQ ---------- ---------- ---------- ENSP00000207870/1-536 ---------- ------GASQ ---------- ---------- ---------- bmy_20314T0/1-574 ---------- ------GSVS GKRPSEFIRG ICIVKINYVL FSKREKHTGL BACU014620/1-856 PLVGLKPLQL LEIKARGRFG CVWKAQLMND FVAVKIFPLQ DKQSWQSERE ENSBTAP00000030820/1-490 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000005107/1-535 ---------- ---------- ---------- ---------- ---------- ENSP00000207870/1-536 ---------- ---------- ---------- ---------- ---------- bmy_20314T0/1-574 FLSTPPTDYH LVIL------ ---------- ---------- ------STLV BACU014620/1-856 IFSTPGMKHE NLLQFIAAEK RGSNLEVELW LITAFHDKGS LTDYLKGNII ENSBTAP00000030820/1-490 ---------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000005107/1-535 VYEAL----- ---------- ---------- ---------- ---------- ENSP00000207870/1-536 VYEAL----- ---------- ---------- ---------- ---------- bmy_20314T0/1-574 VYEAL----- ---------- ---------- ---------- ---------- BACU014620/1-856 TWNELCHVAE TMSRGLSYLH EDVPWCRGEG HKPSIAHRDF KSKNVLLKSD ENSBTAP00000030820/1-490 ---------- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000005107/1-535 ---------- ---------- ---------- ---------- ---------- ENSP00000207870/1-536 ---------- ---------- ---------- ---------- ---------- bmy_20314T0/1-574 ---------- ---------- ---------- ---------- ---------- BACU014620/1-856 LTAVLADFGL AVRFEPGKPP GDTHGQVGTR RYMAPEVLEG AINFQRDAFL ENSBTAP00000030820/1-490 ---------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000005107/1-535 -LQRYAM--- ---------- ---------- ---------- ---------- ENSP00000207870/1-536 -LPQYAK--- ---------- ---------- ---------- ---------- bmy_20314T0/1-574 -LQRYAM--- ---------- ---------- ---------- ---------- BACU014620/1-856 RIDMYAMGLV LWELVSRCKA ADGPVDEYML PFEEEIGQHP SLEELQEVVV ENSBTAP00000030820/1-490 -VSIY----- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000005107/1-535 ---------- ---------- ---------- ---------- -LEQRI---- ENSP00000207870/1-536 ---------- ---------- ---------- ---------- -LEQRI---- bmy_20314T0/1-574 ---------- ---------- ---------- ---------- -LEQRI---- BACU014620/1-856 HKKMRPAIKD HWLKHPGLAQ LCVTIEECWD HDAEARLSAG CVEERVSLIR ENSBTAP00000030820/1-490 ---------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000005107/1-535 ---------- -------LTQ TRGPPE---- ENSP00000207870/1-536 ---------- -------LSQ TRGPPE---- bmy_20314T0/1-574 ---------- -------LTQ TRGPPE---- BACU014620/1-856 RSVNGTTSDC LVSLVTSVTN VDLPPKESSI ENSBTAP00000030820/1-490 ---------- ---------- ----------