KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:03 2014 Check: 00 .. Name: ENSTTRP00000015908/1-613 Len: 917 Check: 6494 Weight: 1.00 Name: ENSP00000373272/1-868 Len: 917 Check: 8055 Weight: 1.00 Name: ENSBTAP00000030842/1-868 Len: 917 Check: 2682 Weight: 1.00 Name: bmy_21331T0/1-756 Len: 917 Check: 8288 Weight: 1.00 Name: BACU014647/1-663 Len: 917 Check: 7461 Weight: 1.00 // 1 50 ENSTTRP00000015908/1-613 MASFSETDFQ ICLLCKEMCG SPAPLSSNSS ASSSSSQTST SSGGGGGGPG ENSP00000373272/1-868 MASFPETDFQ ICLLCKEMCG SPAPLSSNSS ASSSSSQTST SSGGGGGGPG ENSBTAP00000030842/1-868 MASFPETDFQ ICLLCKEMCG SPAPLSSNSS ASSSSSQTST SSGGGGGGPG bmy_21331T0/1-756 ---------- ---------- ---------- ---------- ------MPPG BACU014647/1-663 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000015908/1-613 AAARRLHVLP CLHAFCRPCL EAHRLPAAGG GAPGEPLKL- RCPECDKKDV ENSP00000373272/1-868 AAARRLHVLP CLHAFCRPCL EAHRLPAAGG GAAGEPLKL- RCPVCDQKVV ENSBTAP00000030842/1-868 AAARRLHVLP CL-AFCRPCL EAHR-----G GAPGEPLKL- RCPVCDQKVV bmy_21331T0/1-756 FRLPRL---- ---------L ENVQHGTKIG TKVTNPITFP SCKIGSRKLA BACU014647/1-663 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000015908/1-613 LAEAAG-DAL PSSAFLLSNL LDAVVATADE PPPXXXXXXX XXXXXXXXXX ENSP00000373272/1-868 LAEAAGMDAL PSSAFLLSNL LDAVVATADE PPPKNGRAGA PAGAGG-HSN ENSBTAP00000030842/1-868 LAEAAGMDAR PSSAFLLSNL LDAVVATADE PPPKNGRAGA AAGAGGHGSN bmy_21331T0/1-756 VSQP------ -----FLQKF PEKQPNPCWI THPLRGAACL ADSHLGNHFL BACU014647/1-663 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000015908/1-613 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX----XXX ENSP00000373272/1-868 HRHHAHHAHP RASASA--PP LPQAPQPPAP SRSAPGGPAA SPSALLLRRP ENSBTAP00000030842/1-868 HRHHAHHAHP RAAASAPPPP LPPAPPPPAP PRSAPGGPAG SPSALLLRRP bmy_21331T0/1-756 VDAHYAETLH AGPQGGTEHR IKRRSQHRLP PRVSPLEQLG RK-----KKD BACU014647/1-663 ---------- --------MK IQFRQSQPPP STFQPS---- -------RVD 201 250 ENSTTRP00000015908/1-613 XXXXXXXXED NASSRC-DCQ EHLKDSCVRT HQSERLTKDR YIVLSPPGST ENSP00000373272/1-868 HGCSSCDEGN AASSRCLDCQ EHLCDNCVRA HQRVRLTKDH YIERGPPGP- ENSBTAP00000030842/1-868 HGCSSCDEGN AASSRCLDCQ EHLCDNCVRA HQRVRLTKDH YIERGPPGP- bmy_21331T0/1-756 KKLADFTISL WPLFQKLKSA PCL------- ---------- ---------- BACU014647/1-663 ---------- ------LDSQ SHI------- ---------- ---------- 251 300 ENSTTRP00000015908/1-613 AAAAAAAAAA QQLGLGPPFP GAPFSILSVF PERLGFCQHH DDEVLHLYCD ENSP00000373272/1-868 ----GAAAAA QQLGLGPPFP GPPFSILSVF PERLGFCQHH DDEVLHLYCD ENSBTAP00000030842/1-868 -AAAAAAAAA QQLGLGPPFP GAPFSLLSVF PERLGFCQHH DDEVLHLYCD bmy_21331T0/1-756 ----SALGAL VSLMGGRWQP TAVFIHMTVL ---------- -----HLYCD BACU014647/1-663 ---------- ------ARLP GVPMPAFRVL ---------- -----HLYCD 301 350 ENSTTRP00000015908/1-613 TCSVPICREC TVGRHGGHSF VYLQEALQDS RALTIQLLAD AQQGRQAIQL ENSP00000373272/1-868 TCSVPICREC TMGRHGGHSF IYLQEALQDS RALTIQLLAD AQQGRQAIQL ENSBTAP00000030842/1-868 TCSVPICREC TVGRHGGHSF VYLQEALQDS RALTIQLLAD AQQGRQAIQL bmy_21331T0/1-756 TCSVPICREC TVGRHGGHSF VYLQEALQDS RALTIQLLAD AQQGRQAIQL BACU014647/1-663 TCSVPICREC TVGRHGGHSF VYLQEALQDS RALTIQLLAD AQQGRQAIQL 351 400 ENSTTRP00000015908/1-613 SIEQAQTVAE QVEMKAKVVQ SEVKAVTARH KKALEERECE LLWK------ ENSP00000373272/1-868 SIEQAQTVAE QVEMKAKVVQ SEVKAVTARH KKALEERECE LLWK------ ENSBTAP00000030842/1-868 SIEQAQTVAE QVEMKAKVVQ SEVKAVTARH KKALEERECE LLWK------ bmy_21331T0/1-756 SIEQAQTVAE QVEMKAKVVQ SEVKAVTARH KKALEERECE LLWK------ BACU014647/1-663 SIEQAQTVAE QVEMKAKVVQ SEVKAVTARH KKALEERECE LLWKVEEGNV 401 450 ENSTTRP00000015908/1-613 ---------- ---------- ---------- ---VEKIRQV KAKSLYLQVE ENSP00000373272/1-868 ---------- ---------- ---------- ---VEKIRQV KAKSLYLQVE ENSBTAP00000030842/1-868 ---------- ---------- ---------- ---VEKIRQV KAKSLYLQVE bmy_21331T0/1-756 ---------- ---------- ---------- ---VEKIRQV KAKSLYLQVE BACU014647/1-663 PKRGQCLTPV QLGSPSLNTG TRLYRADVNG CVWVEKIRQV KAKSLYLQVE 451 500 ENSTTRP00000015908/1-613 KLRQNLNKLE STISAVQQVL EEGRALDILL ARDRMLAQVQ ELKTVRSLLQ ENSP00000373272/1-868 KLRQNLNKLE STISAVQQVL EEGRALDILL ARDRMLAQVQ ELKTVRSLLQ ENSBTAP00000030842/1-868 KLRQNLNKLE STISAVQQVL EEGRALDILL ARDRMLAQVQ ELKTVRSLLQ bmy_21331T0/1-756 KLRQNLNKLE STISAVQQVL EEGRALDILL ARDRMLAQVQ ELKTVRSLLQ BACU014647/1-663 KLRQNLNKLE STISAVQQVL EEGRALDILL ARDRMLAQVQ ELKTVRSLLQ 501 550 ENSTTRP00000015908/1-613 PQEDDRVMFT PPDQALYLAI KSFGFVSSGA FAPLTKATGD GLKRALQGKV ENSP00000373272/1-868 PQEDDRVMFT PPDQALYLAI KSFGFVSSGA FAPLTKATGD GLKRALQGKV ENSBTAP00000030842/1-868 PQEDDRVMFT PPDQALYLAI KSFGFVSSGA FAPLTKATGD GLKRALQGKV bmy_21331T0/1-756 PQEDDRVMFT PPDQALYLAI KSFGFVSSGA FAPLTKATGD GLKRALQGKV BACU014647/1-663 PQEDDRVMFT PPDQALYLAI KSFGFVSSGA FAPLTKATGD GLKRALQGKV 551 600 ENSTTRP00000015908/1-613 ASFTVIGYDH DGEPRLSGGD LMSAVVLGPD GNLFGAEVSD QQNGTYVVSY ENSP00000373272/1-868 ASFTVIGYDH DGEPRLSGGD LMSAVVLGPD GNLFGAEVSD QQNGTYVVSY ENSBTAP00000030842/1-868 ASFTVIGYDH DGEPRLSGGD LMSAVVLGPD GNLFGAEVSD QQNGTYVVSY bmy_21331T0/1-756 ASFTVIGYDH DGEPRLSGGD LMSAVVLGPD GNLFGAEVSD QQNGTYVVSY BACU014647/1-663 ASFTVIGYDH DGEPRLSGGD LMSAVVLGPD GNLFGAEVSD QQNGTYVVSY 601 650 ENSTTRP00000015908/1-613 RPQLEGEHLV SVTLCNQHIE NSPFKVVVKS GRSYVGIGLP GHMSFGSEGD ENSP00000373272/1-868 RPQLEGEHLV SVTLCNQHIE NSPFKVVVKS GRSYVGIGLP G-LSFGSEGD ENSBTAP00000030842/1-868 RPQLEGEHLV SVTLCNQHIE NSPFKVVVKS GRSYVGIGLP G-LSFGSEGD bmy_21331T0/1-756 RPQLEGEHLV SVTLCNQHIE NSPFKVVVKS GRSYVGIGLP G-LSFGSEGD BACU014647/1-663 RPQLEGEHLV SVTLCNQHIE NSPFKVVVKS GRSYVGIGLP G-LSFGSEGD 651 700 ENSTTRP00000015908/1-613 SDGKLCRPW- ---------- ---------- ---------- ---------- ENSP00000373272/1-868 SDGKLCRPWG VSVDKEGYII VADRSNNRIQ VFKPCGAFHH KFGTLGSRPG ENSBTAP00000030842/1-868 SDGKLCRPWG VSVDKEGYIV VADRSNNRIQ VFKPCGAFHH KFGTLGSRPG bmy_21331T0/1-756 SDGKLCRPWG VSVDKEGYIV VADRSNNRIQ VFKPCGAFHH KFGTLGSRPG BACU014647/1-663 SDGKLCRPWG VSVDKEGYIV VADRSNNRIQ VFKPCGAFHH KFGTLGSRPG 701 750 ENSTTRP00000015908/1-613 ---------- ---------- ---------- ---------- ---------- ENSP00000373272/1-868 QFDRPAGVAC DASRRIVVAD KDNHRIQIFT FEGQFLLKFG EKGTKNGQFN ENSBTAP00000030842/1-868 QFDRPAGVAC DASRRIVVAD KDNHRIQIFT FEGQFLLKFG EKGTKNGQFN bmy_21331T0/1-756 QFDRPAGVAC DTSRRIVVAD KDNHRIQIFT FEGQFLLKFG EKGTKNGQFN BACU014647/1-663 QFDRPAGVAC DTSRRIVVAD KDNHRIQIFT FEGQFLLKFG EKGTKNGQFN 751 800 ENSTTRP00000015908/1-613 ---------- ---------- ---------- ---------- ---------- ENSP00000373272/1-868 YPWDVAVNSE GKILVSDTRN HRIQLFGPDG VFLNKYGFEG ALWKHFDSPR ENSBTAP00000030842/1-868 YPWDVAVNSE GKILVSDTRN HRIQLFGPDG VFLNKYGFEG ALWKHFDSPR bmy_21331T0/1-756 YPWDVAVNSE GKILVSDTRN HRIQLFGPDG VFLNKYGFEG ALWKHFDSPR BACU014647/1-663 YPWDVAVNSE GKILVSDTRN HRIQLFGPDG VFLNKYGFEG ALWKHFDSPR 801 850 ENSTTRP00000015908/1-613 ---------- ---------- ---------- ---------- ---------- ENSP00000373272/1-868 GVAFNHEGHL VVTDFNNHRL LVIHPDCQSA RFLGSEGTGN GQFLRPQGVA ENSBTAP00000030842/1-868 GVAFNHEGHL VVTDFNNHRL LVIHPDCQSA RFLGSEGTGN GQFLRPQGVA bmy_21331T0/1-756 GVAFNHEGHL VVTDFNNHRL LVIHPDCQSA RFLGSEGTAN GQFLRPQGVA BACU014647/1-663 GVAFNHEGHL VVTDFNNHRL LVIHPDCQSA RFLGSEGTAN GQFLRPQGVA 851 900 ENSTTRP00000015908/1-613 ---------- ---------- ---------- ---------- ---------- ENSP00000373272/1-868 VDQEGRIIVA DSRNHRVQMF ESNGSFLCKF GAQGSGFGQM DRPSGIAITP ENSBTAP00000030842/1-868 VDQEGRIIVA DSRNHRVQMF ESNGSFLCKF GAQGSGFGQM DRPSGIAVTP bmy_21331T0/1-756 VDQEGRIIVA DSRNHRVQMF ESNGSFLCKF GAQGSGFGQM DRPSGIAVTP BACU014647/1-663 VDQEGRIIVA DSRNHRVQMF ESNGSFLCKF GAQGSGFGQM DRPSGIAVTP 901 950 ENSTTRP00000015908/1-613 ---------- ------- ENSP00000373272/1-868 DGMIVVVDFG NNRILVF ENSBTAP00000030842/1-868 DGMIVVVDFG NNRILIF bmy_21331T0/1-756 DGMIVVVDFG NNRILIF BACU014647/1-663 DGMIVVVDFG NNRILIF