KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:41:03 2014 Check: 00 .. Name: ENSP00000219022/1-510 Len: 551 Check: 250 Weight: 1.00 Name: ENSBTAP00000030886/1-509 Len: 551 Check: 8167 Weight: 1.00 Name: bmy_15896T0/1-542 Len: 551 Check: 4962 Weight: 1.00 Name: ENSTTRP00000000628/1-499 Len: 551 Check: 7050 Weight: 1.00 // 1 50 ENSP00000219022/1-510 MRPGLSFLLA LLFFLGQAAG DLGDV----- -----GPPIP SPGFSSFPGV ENSBTAP00000030886/1-509 MKPGFPCLLV LLGLLHSAVM SVWGVTTT-- -----FPSFP TP--DSFPTS bmy_15896T0/1-542 MKPGLPCLLA LLCLLHSDAX SVWGITATST HFTXXSTHFP TTTSTSFLTS ENSTTRP00000000628/1-499 MKPGLPCLLA VLCLLHSDTA SV-------- -----GPPLP TTASTSLLTS 51 100 ENSP00000219022/1-510 DSSSSFSS-- SSRSGSSSSR SLGSGGSVSQ ---------L FSNFTGSVDD ENSBTAP00000030886/1-509 DFSS------ ----GSPTDS AWSTSSSKSQ DSSGKVNYMS FSNFTGNRDD bmy_15896T0/1-542 DFSSSSTSDF SSSSXSTSGS GWSSSSSESQ ---------S XSNFTGSKDD ENSTTRP00000000628/1-499 DFSS------ ----TSASGS GWSTPGSESQ ---------S FSNFTGSKDD 101 150 ENSP00000219022/1-510 RGTCQCSVSL PDTTFPVDRV ERLEFTAHVL SQKFEKELSK VREYVQLISV ENSBTAP00000030886/1-509 RGVCQCSVIL PDNTFPVLRV ERLEITAQTI SKKFETELSK VKEYVQLISK bmy_15896T0/1-542 HGTCQCSVIL PDTTFPVERV ERLEIIAQTV SKKFEKELSI VKEYVQLISV ENSTTRP00000000628/1-499 RGTCQCSVIL PDTTFPVERV ERLEIIAQTI SQKFEKEFSK VKEYVQLISV 151 200 ENSP00000219022/1-510 YEKKLLNLTV RIDIMEKDTI SYTELDFELI KVEVKEMEKL VIQLKESFGG ENSBTAP00000030886/1-509 YEEKLLNLTV RVSIMEKDSI SYTELDFELI KMEVKEMEKL IKRLKVGFSG bmy_15896T0/1-542 YEKKLSNLTI RIEIMEKDTI SYTELDFELI KLEVREMEKL IQQLKDGFVG ENSTTRP00000000628/1-499 YEKKLSNLTV RIEIMEEDTI SYTELDFELI KVEVKEMEKL IEQLKVGFVG 201 250 ENSP00000219022/1-510 SSEIVDQLEV EIRNMTLLVE KLETLDKNNV LAIRREIVAL KTKLKECEAS ENSBTAP00000030886/1-509 STVIIDQLEV EIRNMTLLVE QLETLDKNNV LAIRRQVLAL KNRLKECEAS bmy_15896T0/1-542 SSVIVDQLEV EIRNMTVLVE KLETLDKNNV LAIRRQILAL KEKLKECEDS ENSTTRP00000000628/1-499 SSVIVDQLEV EIRNMTLMVE KLETLDKNNV LAIRRQILAL KNKLKECEDS 251 300 ENSP00000219022/1-510 KDQNTPVVHP PPTP------ ---------- ----GSCGHG GVVNISKPSV ENSBTAP00000030886/1-509 KVESTP---P PPAP------ ---------- ----GSCAHG GVANISKPII bmy_15896T0/1-542 KVENHPAVPP PPAPVGNLSQ YDMQRTPFYL LVPLGSCAHG GVVNISRPVI ENSTTRP00000000628/1-499 KVGNLPALPP PPAP------ ---------- ----GSCAHG GVVNISRPVI 301 350 ENSP00000219022/1-510 VQLNWRGFSY LYGAWGRDYS PQHPNKGLYW VAPLNTDGRL LEYYRLYNTL ENSBTAP00000030886/1-509 VQLNWLGFSY KYGAWGRDYS PQDPGNGLYW VAPLNTDGRI LQYYRLYNTK bmy_15896T0/1-542 XXLNWRGFSY KYGAWGRDYS PQHPGKGLYW VAPLNTDGRT LEYYRLYNTL ENSTTRP00000000628/1-499 VQLNWKGFSY LYGAWGRDYS PQHPGKGLYW VAPLDTDGRT LRSYRIYNTL 351 400 ENSP00000219022/1-510 DDLLLYINAR ELRITYGQGS GTAVYNNNMY VNMYNTGNIA RVNLTTNTIA ENSBTAP00000030886/1-509 DDLLLYTNAR QNQISYGQGS GTVVYKNNMY VNWYNSQNMA KINLTTNKVD bmy_15896T0/1-542 DDLLLYXNXR ZNXXXYGQGG GTVVYKNNMY VNWYNTXNIA KVNLTTXXVA ENSTTRP00000000628/1-499 DDLLLFTNAQ ENWIYYGQGG GIVVYKNNMY VNWYNTQNIA KVNLTTASVA 401 450 ENSP00000219022/1-510 VTQTLPNAAY NNRFSYANVA WQDIDFAVDE NGLWVIYSTE ASTGNMVISK ENSBTAP00000030886/1-509 LSQTLPNAAY NNRFSYANVG WQDMDFAVDE NGLWVIYATE ASTGNIVISK bmy_15896T0/1-542 XTQTLPDAAY NNRFSYANVG WQDIDLAVDE NGLWVTYATE ASTGNMVISK ENSTTRP00000000628/1-499 LTQTLPDAAY NNRFSYANVD WQDIDLAVDE NGLWVTYATE ASTGNMVISK 451 500 ENSP00000219022/1-510 LNDTTLQVLN TWYTKQYKPS ASNAFMVCGV LYATRTMNTR TEEIFYYYDT ENSBTAP00000030886/1-509 LNDTTLAVLN TWHTKQYKPS VTNTFMVCGV LYATRTLNTR IEEIFYYYDT bmy_15896T0/1-542 LNDTTLEVLN TWHTKQYKPS VTNTFMVCGV LYATRTLNTR TEEIFYYYDT ENSTTRP00000000628/1-499 LNDTTLEVLN TWHTKQYKPS VTNTFMVCGV LYATRTLNTR TEEIFYYYDT 501 550 ENSP00000219022/1-510 NTGKEGKLDI VMHKMQEKVQ SINYNPFDQK LYVYNDGYLL NYDLSVLQKP ENSBTAP00000030886/1-509 NTGKEGRLNI VMQKMQETVQ SINYHPFEQK LFVYNDGYLL NYDLVFRQIP bmy_15896T0/1-542 NTGKEGKLNI VMQKMQEXLQ SINYHPFEQK LFVYNDGYLL NYDLVFQQIP ENSTTRP00000000628/1-499 STGKEGKLNI LMHKVKEKLQ SINYHPFEQK LFVYNDGYLL NYDLVFQQIP 551 600 ENSP00000219022/1-510 Q ENSBTAP00000030886/1-509 Q bmy_15896T0/1-542 Q ENSTTRP00000000628/1-499 Q