KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:06 2014 Check: 00 .. Name: ENSP00000277165/1-1118 Len: 1130 Check: 2680 Weight: 1.00 Name: bmy_14684T0/1-664 Len: 1130 Check: 9989 Weight: 1.00 Name: BACU009368/1-1106 Len: 1130 Check: 1204 Weight: 1.00 Name: ENSTTRP00000004241/1-956 Len: 1130 Check: 5011 Weight: 1.00 Name: ENSBTAP00000030923/1-1076 Len: 1130 Check: 7150 Weight: 1.00 // 1 50 ENSP00000277165/1-1118 MGVQGFQDYI EKHCPSAVVP VELQKLARGS LVGGGRQRPP QTPLRLLVDA bmy_14684T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU009368/1-1106 MGVQGFQDYI EKHCPSAVVP VELQKLARGS LVGGGRQRPP HTPLRLLVDA ENSTTRP00000004241/1-956 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030923/1-1076 ---------- ---------- ---------- --------PP HTPLRLLVDA 51 100 ENSP00000277165/1-1118 DNCLHRLYGG FYTDWVSGGQ WNHMLGYLAA LAKACFGGNI ELFVFFNGAL bmy_14684T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU009368/1-1106 DNCLHRLYGG FYTDWVSGGQ WNHMLGYLAA LAKACFGGNI ELFVFFNGAL ENSTTRP00000004241/1-956 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030923/1-1076 DNCLHRLYGG FYTDWVSGGQ WNHMLGYLAA LAKACFGGNI ELFVFFNGAL 101 150 ENSP00000277165/1-1118 EKARLHEWVK RQGNERQTAQ QIVSHVQNKG TPPPKVWFLP PVCMAHCIRL bmy_14684T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU009368/1-1106 EKARLHEWVK RQGNERQTAQ QIVSHVQNKG TPPPKVWFLP PVCMAHCIRL ENSTTRP00000004241/1-956 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030923/1-1076 EKARLHEWVK RQGNERQTAQ QIVSHVQNKG TPPPKVWFLP PVCMAHCIRL 151 200 ENSP00000277165/1-1118 ALIRFHVKVA QSIEDHHQEV IGFCRENGFH GLVAYDSDYA LCNIPYYFSA bmy_14684T0/1-664 ---------- ---------- ---------- ---------- MCGM------ BACU009368/1-1106 ALIRFHVKVA QSIEDHHQEV IGFCRENGFH GLVAYDSDYA LCNIPYYFSA ENSTTRP00000004241/1-956 --------VA QSIEDHHQEV IGFCRENGFH GLVAYDSDYA LCNIPYYFSA ENSBTAP00000030923/1-1076 ALIRFHVKVA QSIEDHHQEV IGFCRENGFH GLVAYDSDYA LCNIPYYFSA 201 250 ENSP00000277165/1-1118 HALKLSRNGK SLTTSQYLMH EVAKQLDLNP NRFPIFAALL GNHILPDEDL bmy_14684T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU009368/1-1106 HALKLSRNGK SLTTSQYLMH EVAKQLDLNP NRFPIFAALL GNHILPDEDL ENSTTRP00000004241/1-956 HALKLSRNGK SLTTSQYLMH EVAKQLDLNP NRFPIFAALL GNHILPDEDL ENSBTAP00000030923/1-1076 HALKLSRNGK SLTTSQYLMH EVAKQLDLNP NRFPIFAALL GNHILPDEDL 251 300 ENSP00000277165/1-1118 ASFHWSLLGP EHPLASLKVR AHQLVLPPCD VVIKAVADYV RNIQDTSDLD bmy_14684T0/1-664 ----WSTL-- ---------- --------IS ILV------- ---------- BACU009368/1-1106 ASFHWSLLGP EHPLASLKVR AHQLVLPPCD VVIKAVADYV RNIQDTSDLD ENSTTRP00000004241/1-956 ASFHWSLLGP EHPLASLKVR AHQLVLPPCD VVIKAVADYV RNIQDTSDLD ENSBTAP00000030923/1-1076 ASFHWSLLGP EHPLASLKVR AHQLVLPPCD VVIKAVADYV RNIQDTSDLD 301 350 ENSP00000277165/1-1118 AIAKDVFQHS QSRTDDKVIR FKRAIGYYSA TSKPMSFHPP HYL------- bmy_14684T0/1-664 ---------- ---------- ---------- ---------- HFM------- BACU009368/1-1106 AIAKDVFQHS QSRTDDKVIR FKRAIGYYSA TSKPMAFHPP HYLVVLLFSF ENSTTRP00000004241/1-956 AIAKDVFQHS QSRTDDKVIR FKRAIGYYSA TSKPMAFHPP HYL------- ENSBTAP00000030923/1-1076 AIAKDVFQHS QSRTDDKVIR FKRAIGYYSA TSKPMAFHPP HYL------- 351 400 ENSP00000277165/1-1118 ----AARPGP FGMPGMVPPH VPPQMLNIPQ TSLQAKPVAP QVPSPGGAPG bmy_14684T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU009368/1-1106 HIDETARPNP FGMPGIVPPY VPPQMLNIPQ TSLQAKPVAP QVPSP-GAPG ENSTTRP00000004241/1-956 ----AARPNP FGMPGLVPPY VPPQMLNIPQ TSLQAKPVAP QVPSP-GAPG ENSBTAP00000030923/1-1076 -----ARPNP FGMPGIVPPY VPPQMLNIPQ TSLQAKPVAP QVPSP-GAPG 401 450 ENSP00000277165/1-1118 QGPYPYSLSE PAPLTLDTSG KNLTEQNSYS NIPHEGKHTP LYERSSPINP bmy_14684T0/1-664 ---------- ---------- --------FS ---------- ---------- BACU009368/1-1106 QGPHPYSLAE PA-LTLETSG KNLTEQN-YS NIPHEGKHTP LYERSSPINP ENSTTRP00000004241/1-956 QGPHPYSLAE PA-LTLETSG KNLTEQN-YS NIPHEGKHTP LYERSSPINP ENSBTAP00000030923/1-1076 QGPHPYNLAE PA-LTLETSG KNLTEQN-YS NIPHEGKHTP LYERSSPINP 451 500 ENSP00000277165/1-1118 AQSGSPNHVD SAYFPGSSTS SSSDNDEGSG GATNHISGNK IGWEKTGSHS bmy_14684T0/1-664 ---------- ---------- ---------- ----HISGNK IGWEKTGSHS BACU009368/1-1106 APSGSPNHVD SAYFPGSSTS SSSDNDEGSG GAAKIVLFTK F--------- ENSTTRP00000004241/1-956 APSGSPNHVD SAYFPGSSTS SSSDNDEGSG GAANHISGNK IGWEKTGSHS ENSBTAP00000030923/1-1076 APSGSPNHVD SAYFPGSSTS SSSDNDEGSG GAANHISGNK IGWEKTGSHS 501 550 ENSP00000277165/1-1118 EPQARGDPGD QTK-AEGSST ASSGSQLAEG KGSQMGTVQP IPCLLSMPTR bmy_14684T0/1-664 EPQARGDSGD QTKVAEGSST ASSGSQLAEG KGSQIGTVQP IPCLLSMPTR BACU009368/1-1106 ---------- -AQ-AEGSST ASSGSQLAEG KGSQIGTVQP IPCLLSMPTR ENSTTRP00000004241/1-956 EPQARGDSGD QTK-AEGSST ASSGSQLAEG KGSQIGTVQP IPCLLSMPTR ENSBTAP00000030923/1-1076 EPQARGDPGD QTK-AEGSST ASSGSQLAEG KGNQIGTVQP IPCLLSMPTR 551 600 ENSP00000277165/1-1118 NHMDITTPPL PPVAPEVLRV AEHRHKKGLM YPYIFHVLTK GEIKIAVSIE bmy_14684T0/1-664 NHMDITTPPL PPVAPEVLRV AEHRHKKGLM YPYIFHVLTK GEIKIAVSIE BACU009368/1-1106 NHMDITTPPL PPVAPEVLRV AEHRHKKGLM YPYIFHVLTK GEIKIAVSIE ENSTTRP00000004241/1-956 NHMDITTPPL PPVAPEVLRV AEHRHKKGLM YPYIFHVLTK GEIKIAVSIE ENSBTAP00000030923/1-1076 NHMDITTPPL PPVAPEVLRV AEHRHKKGLM YPYIFHVLTK GEIKIAVSIE 601 650 ENSP00000277165/1-1118 DEANKDLPPA ALLYRPVRQY VYGVLFSLAE SRKKTERLAF RKNRLPPEFS bmy_14684T0/1-664 DEASKDLPPA ALLYRPVRQY VYGVLFSLAE SRKKTERLAF RKNRLPPEFS BACU009368/1-1106 DEASKDLPPA ALLYRPVRQY VYGVLFSLAE SRKKTERLAF RKNRLPPEFS ENSTTRP00000004241/1-956 DEASKDLPPA ALLYRPVRQY VYGVLFSLAE SRKKTERLAF RKNRLPPEF- ENSBTAP00000030923/1-1076 DEASKDLPPA ALLYRPVRQY VYGVLFSLAE SRKKTERLAF RKNRLPPEFS 651 700 ENSP00000277165/1-1118 PVIIKEWAAY KGKSPQTPEL VEALAFREWT CPNLKRLWLG KAVEDKNRRM bmy_14684T0/1-664 PVIIKEWAAY KGKSPQTPEL VEALAFREWT CPNLKRLWLG KAVEDKNRRM BACU009368/1-1106 PVIIKEWAAY KGKSPQTPEL VEALAFREWT CPNLKRLWLG KAVEDKNRRM ENSTTRP00000004241/1-956 PVIIKEWAAY KGKSPQTPEL VEALAFREWT CPNLKRLWLG KAVEDKNRRM ENSBTAP00000030923/1-1076 PVIIKEWAAY KGKSPQTPEL VEALAFREWT CPNLKRLWLG KAVEDKNRRM 701 750 ENSP00000277165/1-1118 RAFLACMRSD TPAMLNPANV PTHLMVLCCV LRYMVQWPGA RILRRQELDA bmy_14684T0/1-664 RAFLACMRSD TPAMLNPASV PTHLTVLCCV LRYMVQWPGA RILRRQELDA BACU009368/1-1106 RAFLACMRSD TPAMLNPASV PTHLTVLCCV LRYMVQWPGA RILRRQELDA ENSTTRP00000004241/1-956 RAFLACMRSD TPAMLNPASV PTHLTVLCCV LRYMVQWPGA RILRRQELDA ENSBTAP00000030923/1-1076 RAFLACMRSD TPAMLNPASV PTHLTVLCCV LRYMVQWPGA RILRRQELDA 751 800 ENSP00000277165/1-1118 FLAQALSPKL YEPDQLQELK IENLDPRGIQ LSALFMSGVD MALFANDACG bmy_14684T0/1-664 FLAQALSPKL YEPDQLQELK IENLDPRGIQ LSALFMSGVD MALFANDACG BACU009368/1-1106 FLAQALSPKL YEPDQLQELK IENLDPRGIQ LSALFMSGVD MALFANDACG ENSTTRP00000004241/1-956 FLAQALSPKL YEPDQLQELK IENLDPRGIQ LSALFMSGVD MALFANDACG ENSBTAP00000030923/1-1076 FLAQALSPKL YEPDQLQELK IENLDPRGIQ LSALFMSGVD MALFANDACG 801 850 ENSP00000277165/1-1118 QPIPWEHCCP WMYFDGKLFQ SKLLKASREK TPLIDLCDGQ ADQAAKVEKM bmy_14684T0/1-664 QPVPWEHCCP WMYFDGKLFQ SKLLKASREK TPLIDLCDGQ AEQAAKVEKM BACU009368/1-1106 QPVPWEHCCP WMYFDGKLFQ SKLLKASREK TPLIDLCDGQ AEQAAKVEKM ENSTTRP00000004241/1-956 QPVPWEHCCP WMYFDGKLFQ SKLLKASREK TPLIDLCDGQ AEQAAKVEKM ENSBTAP00000030923/1-1076 QPVPWEHCCP WMYFDGKLFQ SKLLKASREK TPLIDLCDGQ AEQAAKVEKM 851 900 ENSP00000277165/1-1118 RQSVLEGLSF SRQSHTLPFP PPPALPFYPA SAYPRHFGPV PPSQGRGRGF bmy_14684T0/1-664 RQSILEGLNF SRQSHPLPFP PPAALPFYPT SVYPRHFGPV PPAQGRGRGF BACU009368/1-1106 RQSILEGLNF SRQSHPLPFP PPAALPFYPT SVYPRHFGPV PPAQGRGRGF ENSTTRP00000004241/1-956 RQSILEGLNF SRQSHPLPFP PPAALPFYPT SVYPRHFGPV PPAQGRGRGF ENSBTAP00000030923/1-1076 RQSILEGLNF SRQSHPLPFP PPAALPFYPT SVYPRHFGPV PPAQGRGRGF 901 950 ENSP00000277165/1-1118 AGVCGFGGPY GETVATGPYR AFRVAAASGH CGAFSGSDSS RTSKSQGGVQ bmy_14684T0/1-664 AGVCGFGGPY GETVATGAYR AFRVATAAGH CGAFSGSDSS RTSKSQGGIQ BACU009368/1-1106 AGVCGFGGPY GETVATGAYR AFRVATAAGH CGAFSGSDSS RTSKSQGGIQ ENSTTRP00000004241/1-956 AGVCGFGGPY GETVATGAYR AFRVATAAGH CGAFSGSDSS RTSKSQGGIQ ENSBTAP00000030923/1-1076 AGVCGFGSPY GETVATGAYR AFRVATATGH CGAFSGSDSS RTSKSQGGIQ 951 1000 ENSP00000277165/1-1118 PIPSQGGKLE IAGTVVGHWA GSRRGRGGRG PFPLQVVSVG GPARGRPRGV bmy_14684T0/1-664 PIPSQGGKLE IAGTVVGHWA GSRRGRGGRG PFPLQVVSVG GPARGRPRGV BACU009368/1-1106 PIPSQGGKLE IAGTVVGHWA GSRRGRGGRG PFPLQVVSVG GPARGRPRGV ENSTTRP00000004241/1-956 PIPSQGGKLE IAGTVVGHWA GSRRGRGGRG PFPLQVVSVG GPARGRPRGV ENSBTAP00000030923/1-1076 PIPSQGGKLE IAGTVVGHWA GSRRGRGGRG PFPLQVVSVG GPARGRPRGV 1001 1050 ENSP00000277165/1-1118 ISTPVIRTFG RGGRYYGRGY KNQAAIQGRP PYAASAEEVA KELKSKSGES bmy_14684T0/1-664 ISTPVIRTFG RGGRYYGRGY KNQGAIQGKP PYAASAEEVA KELKSRSGES BACU009368/1-1106 ISTPVIRTFG RGGRYYGRGY KNQGAIQGKP PYAASAEEVA KELKSRSGES ENSTTRP00000004241/1-956 ISTPVIRTFG RGGRYYGRGY KNQGAIQGKP PYAASAEEVA KELKSRSGES ENSBTAP00000030923/1-1076 ISTPVIRTFG RGGRYYGRGY KNQGAIQGKP PYAASAEEVA KELKSRSGES 1051 1100 ENSP00000277165/1-1118 KSSAMSSDGS LAENGVMAEE KPAPQMNGST GDARAPSHSE SALNNDSKTC bmy_14684T0/1-664 KSSAVSSDGS LAENGAVAEE KPAPQMNGNA GDTRAPSHSE SALNNDSKTC BACU009368/1-1106 KSSAVSSDGS LAENGAVAEE KPAPQMNGNA GDTRAPSHSE SALNNDSKTC ENSTTRP00000004241/1-956 KSSAVSSDGS LAENGAVAEE KPAPQMNGSA GDTRAPSHSE SALNNDSKTC ENSBTAP00000030923/1-1076 KSSAMSSDGS LAENGAVAEE KPAPQMNGSA GDTRAPSHSE SALNNDSKTC 1101 1150 ENSP00000277165/1-1118 NTNPHLNALS TDSACRREAA LEAAVLNKEE bmy_14684T0/1-664 NTNPHLNALS TDSACRRADA LEAAVLKKEE BACU009368/1-1106 NTNPHLNALS TDSACRRADA LEAAVLKKEE ENSTTRP00000004241/1-956 NTNPHLNALS TDSACRRADA LEAAVLKKEE ENSBTAP00000030923/1-1076 NTNPHLNALS TDSGCRRADA LEAAVLKKEE