KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:07 2014 Check: 00 .. Name: ENSP00000005260/1-511 Len: 554 Check: 1561 Weight: 1.00 Name: ENSBTAP00000030949/1-495 Len: 554 Check: 7895 Weight: 1.00 Name: ENSTTRP00000014882/1-466 Len: 554 Check: 7350 Weight: 1.00 Name: bmy_16988T0/1-436 Len: 554 Check: 3935 Weight: 1.00 Name: BACU012119/1-463 Len: 554 Check: 9506 Weight: 1.00 // 1 50 ENSP00000005260/1-511 MSRGPEEVNR LTESTYRNVM EQFNPGLRNL INLGKNYEKA VNAMILAGKA ENSBTAP00000030949/1-495 ---------- -----FQNVM EQFNPGLRNL INLGKNYEKA VNAMILAGRA ENSTTRP00000014882/1-466 ---------- ---------- ---------- ---------- ---MILAGKA bmy_16988T0/1-436 ---------- -------MLW SKF------- ---------A VSCVRLTHPR BACU012119/1-463 ---------- -------MLW SKF------- ---------A VSCVHLTHPC 51 100 ENSP00000005260/1-511 YYDGV---AK IGEIATGSPV STEL------ ---------- ---------- ENSBTAP00000030949/1-495 YYDGV---AK IGEIATGSPV STEL------ ---------- ---------- ENSTTRP00000014882/1-466 YYDGV---AK IGEIASGSPV STEL------ ---------- ---------- bmy_16988T0/1-436 CQDAA----- ---------- ---------- ---------- ---------- BACU012119/1-463 CQDAAGVPSA TGLVPTCSGS SRGLGFIHHF TSLRIFTKTT QWLFALTYLV 101 150 ENSP00000005260/1-511 ---GHVLIEI SSTHKKLNES LDENFKKFHK EIIHELEKKI ELDVKYMNAT ENSBTAP00000030949/1-495 ---GHVLIEI SSIHKKLNES LDENFKKFHK EIIYELEKKT ELDVKYMNAT ENSTTRP00000014882/1-466 ---GHVLIEI SSIHKKLNER LDENFRKFHK EIIHELEKKT ELDVKYMNAT bmy_16988T0/1-436 ---GHVLIEI SSIHKKLNES LDENFRKFHK EIIRELEKKT ELDVKYMNAT BACU012119/1-463 LSTGHVLIEI SSIHKKLNES LDENFRKFHK EIIHELEKKT ELDVKYMN-- 151 200 ENSP00000005260/1-511 LKRYQTEHKN KLESLEKSQA ELKKIRRKSQ GSRNALKYEH KEIEYVETVT ENSBTAP00000030949/1-495 LKRYQAEHRH RLDSLEKSQA ELKKIRRKSQ GGRNPFKYEC KEIEYVETIT ENSTTRP00000014882/1-466 LKRYQAEHRN KLDSLEKSQA ELKKIRRKSQ GGRNALKYEH KEMEYVETIT bmy_16988T0/1-436 LKRYQAEHRN KLDSLEKSQA ELKKIRRKSQ GGRNAVKYEY KEIEYVETIT BACU012119/1-463 ---------- ---------- ---------- ---------- ----YVETIT 201 250 ENSP00000005260/1-511 SRQSEIQKFI ADGCKEALLE EKRRFCFLVD KHCGFANHIH YYHLQSAELL ENSBTAP00000030949/1-495 SRQNEIQKFI ADGCKEALLE EKRRFCFLVD KHC-FSSQIH HYHMQSAELI ENSTTRP00000014882/1-466 SRQNEIQKFI ADGCKEALLE EKRRFCFLVD KHCSFANHIH QYHLQSAELI bmy_16988T0/1-436 SRQNEIQKFI ADGCKEALLE EKRRFCFLVD KHCSFANHIH QYHLQSAELI BACU012119/1-463 SRQNEIQKFI ADGCKEALLE EKRRFCFLVD KHCSFANHIH QYHLQSAELI 251 300 ENSP00000005260/1-511 NSKLPRWQET CVDAIKVPEK IMNMIEEIKT PASTPVSGTP QASPMIERSN ENSBTAP00000030949/1-495 NSKLPRWQET CSDVTKVPEK IINMIEEIKT PISTPMSGTP LPSPMIERSS ENSTTRP00000014882/1-466 NSKLPKWQET CGDATKVPEK IMNMIEEIKT PISTPMSGTP LPSPMIERRS bmy_16988T0/1-436 NSKLPKWQET CGDATKVPEK IMNMIEEIKT PISTPMSGTP LPSPMIERSS BACU012119/1-463 NSKLPRWQET CGDATKVPEK IMNMIEEIKT PISTPMSGTP LPSPMIERSS 301 350 ENSP00000005260/1-511 VVRKDYDTLS KCSPKMPPAP SGRAYTSPLI DMFNNPATAA PNSQRVNNST ENSBTAP00000030949/1-495 MVGQDCDSLS KYPPKIPAAP SARALTSPLI DLFKNPATVA QNSERKNNLT ENSTTRP00000014882/1-466 MVGRDYDTLS KYSPKIPSAP SARALTSPLI DMFNNPATVA QNSERKNNST bmy_16988T0/1-436 MVGRDYDTLS KYSPKIPSAP SARASTSPLI DMFNNPATVA QNSERKYNST BACU012119/1-463 MVGRDYDTLS KYSPKIPSAP SARASTSPLI DMFNNPATVA QNSERKYNST 351 400 ENSP00000005260/1-511 GTSEDPSLQR SVSVATGLNM MKKQKVKTIF PHTAGSNKTL LSFAQGDVIT ENSBTAP00000030949/1-495 GSSVDPNLPR SVSMASGLNM VKKQKVKTIF PHTAGANQTL LSFAQGDVIT ENSTTRP00000014882/1-466 GSSDDPSLQR SVSVATGLNR VKKQKVKTIF PHTAGANQTL LSFAQGDVIT bmy_16988T0/1-436 GSSDDPSLQR SVSVATGLNR VKKQKVKTIF PHTAGANQTL LSFAQGDVIT BACU012119/1-463 GSSDDPSLQR SVSVATGLNR VKKQKVKTIF PHTAGANQTL LSFAQGDVIT 401 450 ENSP00000005260/1-511 LLIPEEKDGW LYGEHDVSKA ---------- -RGWFPSSYT KLLEENETEA ENSBTAP00000030949/1-495 LLISEEKDGW MYGEHDSTKM ---------- -RGWFPSSYT KLLEENEEEA ENSTTRP00000014882/1-466 LLISEEKDGW LYGEHEDTKV ---------- -RGWFPSSYT KLLEENEKET bmy_16988T0/1-436 LLISEEKDGW LYGEHEDTKV EVFFSPLFTC RRGWFPSSYT KLLEENEKET BACU012119/1-463 LLVSEEKDGW LYGEHEDTKV ---------- -RGWFPSSYT KLLEENEKET 451 500 ENSP00000005260/1-511 VTVPTPSPTP VRSISTVNLS ENSSVVIPPP DYLECLSMGA AADRRADSAR ENSBTAP00000030949/1-495 ASELAPSLAP VRSVSTTNLA EKSSVVIPPP DYLEFLSTGA AAAEREDISQ ENSTTRP00000014882/1-466 VSVPGPSSVS VRSVSTMNLS EKSSVVIPPP DYLECSSMGA AAEKKGAV-- bmy_16988T0/1-436 VSVPGPSLIS VRSVSTMNLS EKSSVVIPPP DYLECSSTGA AAEKKGVVSQ BACU012119/1-463 VSVPGPSLIS VRSVSTMNLS EKSSVVIPPP DYLERSSTGA AAEKKGVVSQ 501 550 ENSP00000005260/1-511 TTSTFKAPAS KPETAAPNDA NGTAKPPFLS GENPFATVKL RPTVTNDRSA ENSBTAP00000030949/1-495 KASNHKAPVP KPESTPPNNA NGFAKPPFLS GENPFATVKL RPTVTNDRSA ENSTTRP00000014882/1-466 KTSTFKAPVS KPETTSPNDA NGFAKPPFLS RENPFATVKL RPTVTNDRSA bmy_16988T0/1-436 NASTFKAPVS KPETTSP--- ---------- ---------- ---------- BACU012119/1-463 NASTFKAPVS KPETTSPNDA NGFAKPPFLS GENPFATVKL RPTVTNDRSA 551 600 ENSP00000005260/1-511 PIIR ENSBTAP00000030949/1-495 PIIR ENSTTRP00000014882/1-466 PVIR bmy_16988T0/1-436 ---- BACU012119/1-463 PVI-