KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:41:07 2014 Check: 00 ..
Name: ENSP00000005260/1-511 Len: 554 Check: 1561 Weight: 1.00
Name: ENSBTAP00000030949/1-495 Len: 554 Check: 7895 Weight: 1.00
Name: ENSTTRP00000014882/1-466 Len: 554 Check: 7350 Weight: 1.00
Name: bmy_16988T0/1-436 Len: 554 Check: 3935 Weight: 1.00
Name: BACU012119/1-463 Len: 554 Check: 9506 Weight: 1.00
//
1 50
ENSP00000005260/1-511 MSRGPEEVNR LTESTYRNVM EQFNPGLRNL INLGKNYEKA VNAMILAGKA
ENSBTAP00000030949/1-495 ---------- -----FQNVM EQFNPGLRNL INLGKNYEKA VNAMILAGRA
ENSTTRP00000014882/1-466 ---------- ---------- ---------- ---------- ---MILAGKA
bmy_16988T0/1-436 ---------- -------MLW SKF------- ---------A VSCVRLTHPR
BACU012119/1-463 ---------- -------MLW SKF------- ---------A VSCVHLTHPC
51 100
ENSP00000005260/1-511 YYDGV---AK IGEIATGSPV STEL------ ---------- ----------
ENSBTAP00000030949/1-495 YYDGV---AK IGEIATGSPV STEL------ ---------- ----------
ENSTTRP00000014882/1-466 YYDGV---AK IGEIASGSPV STEL------ ---------- ----------
bmy_16988T0/1-436 CQDAA----- ---------- ---------- ---------- ----------
BACU012119/1-463 CQDAAGVPSA TGLVPTCSGS SRGLGFIHHF TSLRIFTKTT QWLFALTYLV
101 150
ENSP00000005260/1-511 ---GHVLIEI SSTHKKLNES LDENFKKFHK EIIHELEKKI ELDVKYMNAT
ENSBTAP00000030949/1-495 ---GHVLIEI SSIHKKLNES LDENFKKFHK EIIYELEKKT ELDVKYMNAT
ENSTTRP00000014882/1-466 ---GHVLIEI SSIHKKLNER LDENFRKFHK EIIHELEKKT ELDVKYMNAT
bmy_16988T0/1-436 ---GHVLIEI SSIHKKLNES LDENFRKFHK EIIRELEKKT ELDVKYMNAT
BACU012119/1-463 LSTGHVLIEI SSIHKKLNES LDENFRKFHK EIIHELEKKT ELDVKYMN--
151 200
ENSP00000005260/1-511 LKRYQTEHKN KLESLEKSQA ELKKIRRKSQ GSRNALKYEH KEIEYVETVT
ENSBTAP00000030949/1-495 LKRYQAEHRH RLDSLEKSQA ELKKIRRKSQ GGRNPFKYEC KEIEYVETIT
ENSTTRP00000014882/1-466 LKRYQAEHRN KLDSLEKSQA ELKKIRRKSQ GGRNALKYEH KEMEYVETIT
bmy_16988T0/1-436 LKRYQAEHRN KLDSLEKSQA ELKKIRRKSQ GGRNAVKYEY KEIEYVETIT
BACU012119/1-463 ---------- ---------- ---------- ---------- ----YVETIT
201 250
ENSP00000005260/1-511 SRQSEIQKFI ADGCKEALLE EKRRFCFLVD KHCGFANHIH YYHLQSAELL
ENSBTAP00000030949/1-495 SRQNEIQKFI ADGCKEALLE EKRRFCFLVD KHC-FSSQIH HYHMQSAELI
ENSTTRP00000014882/1-466 SRQNEIQKFI ADGCKEALLE EKRRFCFLVD KHCSFANHIH QYHLQSAELI
bmy_16988T0/1-436 SRQNEIQKFI ADGCKEALLE EKRRFCFLVD KHCSFANHIH QYHLQSAELI
BACU012119/1-463 SRQNEIQKFI ADGCKEALLE EKRRFCFLVD KHCSFANHIH QYHLQSAELI
251 300
ENSP00000005260/1-511 NSKLPRWQET CVDAIKVPEK IMNMIEEIKT PASTPVSGTP QASPMIERSN
ENSBTAP00000030949/1-495 NSKLPRWQET CSDVTKVPEK IINMIEEIKT PISTPMSGTP LPSPMIERSS
ENSTTRP00000014882/1-466 NSKLPKWQET CGDATKVPEK IMNMIEEIKT PISTPMSGTP LPSPMIERRS
bmy_16988T0/1-436 NSKLPKWQET CGDATKVPEK IMNMIEEIKT PISTPMSGTP LPSPMIERSS
BACU012119/1-463 NSKLPRWQET CGDATKVPEK IMNMIEEIKT PISTPMSGTP LPSPMIERSS
301 350
ENSP00000005260/1-511 VVRKDYDTLS KCSPKMPPAP SGRAYTSPLI DMFNNPATAA PNSQRVNNST
ENSBTAP00000030949/1-495 MVGQDCDSLS KYPPKIPAAP SARALTSPLI DLFKNPATVA QNSERKNNLT
ENSTTRP00000014882/1-466 MVGRDYDTLS KYSPKIPSAP SARALTSPLI DMFNNPATVA QNSERKNNST
bmy_16988T0/1-436 MVGRDYDTLS KYSPKIPSAP SARASTSPLI DMFNNPATVA QNSERKYNST
BACU012119/1-463 MVGRDYDTLS KYSPKIPSAP SARASTSPLI DMFNNPATVA QNSERKYNST
351 400
ENSP00000005260/1-511 GTSEDPSLQR SVSVATGLNM MKKQKVKTIF PHTAGSNKTL LSFAQGDVIT
ENSBTAP00000030949/1-495 GSSVDPNLPR SVSMASGLNM VKKQKVKTIF PHTAGANQTL LSFAQGDVIT
ENSTTRP00000014882/1-466 GSSDDPSLQR SVSVATGLNR VKKQKVKTIF PHTAGANQTL LSFAQGDVIT
bmy_16988T0/1-436 GSSDDPSLQR SVSVATGLNR VKKQKVKTIF PHTAGANQTL LSFAQGDVIT
BACU012119/1-463 GSSDDPSLQR SVSVATGLNR VKKQKVKTIF PHTAGANQTL LSFAQGDVIT
401 450
ENSP00000005260/1-511 LLIPEEKDGW LYGEHDVSKA ---------- -RGWFPSSYT KLLEENETEA
ENSBTAP00000030949/1-495 LLISEEKDGW MYGEHDSTKM ---------- -RGWFPSSYT KLLEENEEEA
ENSTTRP00000014882/1-466 LLISEEKDGW LYGEHEDTKV ---------- -RGWFPSSYT KLLEENEKET
bmy_16988T0/1-436 LLISEEKDGW LYGEHEDTKV EVFFSPLFTC RRGWFPSSYT KLLEENEKET
BACU012119/1-463 LLVSEEKDGW LYGEHEDTKV ---------- -RGWFPSSYT KLLEENEKET
451 500
ENSP00000005260/1-511 VTVPTPSPTP VRSISTVNLS ENSSVVIPPP DYLECLSMGA AADRRADSAR
ENSBTAP00000030949/1-495 ASELAPSLAP VRSVSTTNLA EKSSVVIPPP DYLEFLSTGA AAAEREDISQ
ENSTTRP00000014882/1-466 VSVPGPSSVS VRSVSTMNLS EKSSVVIPPP DYLECSSMGA AAEKKGAV--
bmy_16988T0/1-436 VSVPGPSLIS VRSVSTMNLS EKSSVVIPPP DYLECSSTGA AAEKKGVVSQ
BACU012119/1-463 VSVPGPSLIS VRSVSTMNLS EKSSVVIPPP DYLERSSTGA AAEKKGVVSQ
501 550
ENSP00000005260/1-511 TTSTFKAPAS KPETAAPNDA NGTAKPPFLS GENPFATVKL RPTVTNDRSA
ENSBTAP00000030949/1-495 KASNHKAPVP KPESTPPNNA NGFAKPPFLS GENPFATVKL RPTVTNDRSA
ENSTTRP00000014882/1-466 KTSTFKAPVS KPETTSPNDA NGFAKPPFLS RENPFATVKL RPTVTNDRSA
bmy_16988T0/1-436 NASTFKAPVS KPETTSP--- ---------- ---------- ----------
BACU012119/1-463 NASTFKAPVS KPETTSPNDA NGFAKPPFLS GENPFATVKL RPTVTNDRSA
551 600
ENSP00000005260/1-511 PIIR
ENSBTAP00000030949/1-495 PIIR
ENSTTRP00000014882/1-466 PVIR
bmy_16988T0/1-436 ----
BACU012119/1-463 PVI-