KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:07 2014 Check: 00 .. Name: bmy_15390T0/1-261 Len: 356 Check: 3197 Weight: 1.00 Name: ENSP00000334813/1-346 Len: 356 Check: 2519 Weight: 1.00 Name: ENSBTAP00000030951/1-351 Len: 356 Check: 3722 Weight: 1.00 Name: ENSTTRP00000006334/1-229 Len: 356 Check: 1195 Weight: 1.00 Name: BACU014900/1-237 Len: 356 Check: 1733 Weight: 1.00 // 1 50 bmy_15390T0/1-261 MHLPGCAPAM ADGSFSLAGP LLRSPGGSTS RLHSIEAILG FTKDDGILGS ENSP00000334813/1-346 MHLPGCAPAM ADGSFSLAGH LLRSPGGSTS RLHSIEAILG FTKDDGILGT ENSBTAP00000030951/1-351 MHLPGCAPAM ADGSFSLAGH LLRSPGGSTS RLHSIEAILG FTKDDGVLGS ENSTTRP00000006334/1-229 MHLPGCAPAM ADGSFSLAGH LLRSPGGSTS RLHSIEAILG FTKDDGILGS BACU014900/1-237 MHLPGCAPAM ADGSFSLAGH LLRSPGGSTS RLHSIEAILG FTKDDGILGS 51 100 bmy_15390T0/1-261 FPEERAARGE KERDRRPGAR TSCPKAPAGG AEPSTPPAQA PAPEYEAPRP ENSP00000334813/1-346 FPAERGARGA KERDRRLGAR PACPKAPEEG SEPSPPPAPA PAPEYEAPRP ENSBTAP00000030951/1-351 FPEERAARGT KERDRRPGAR PAGPKAPAGG TEPSPPPAPA PAPEYEAPRP ENSTTRP00000006334/1-229 FPEERVARGA KERDRRPGAR TSCPKAPAGG AEPSTPPAPA PAPEYEAPRP BACU014900/1-237 FPEERVARGA KERDRRPGAR TSCPKAPAGG AEPSTPPAPA PAPEYEAPRP 101 150 bmy_15390T0/1-261 YCPKETGEAR PSPGLPVGPP APGDSKLSEE EQPKKKHRRN RTTFTTYQLH ENSP00000334813/1-346 YCPKEPGEAR PSPGLPVGP- ATGEAKLSEE EQPKKKHRRN RTTFTTYQLH ENSBTAP00000030951/1-351 YCPKETGEAR PSPGLPGGPS APGDSKLLEE EQPKKKHRRN RTTFTTYQLH ENSTTRP00000006334/1-229 YCPKETGEAR PSPGLPVGPP APSDSKLSEE EQPKKKHRRN RTTFTTYQLH BACU014900/1-237 YCPKETGEAR PSPGLPVGPP APGDSKLSEE EQPKKKHRRN RTTFTTYQLH 151 200 bmy_15390T0/1-261 ELERAFEKSH YPDVYSREEL AGKVNLPEVR VQVKRPDGPT GGPEAQAAAK ENSP00000334813/1-346 ELERAFEKSH YPDVYSREEL AGKVNLPEVR VQVWFQNRRA KWRRQEKLEV ENSBTAP00000030951/1-351 ELERAFEKSH YPDVYSREEL AGKVNLPEVR VQVWFQNRRA KWRRQEKLEV ENSTTRP00000006334/1-229 ELERAFEKSH YPDVYSREEL AGKVNLPEVR VQVWFQNRRA KWRRQEKLEV BACU014900/1-237 ELERAFEKSH YPDVYSREEL AGKVNLPEVR VQ-------- ---------- 201 250 bmy_15390T0/1-261 APLNPWASTR LLWHFSHGPS CAWFSQ---- ---------- ---------- ENSP00000334813/1-346 SSMKLQDSP- -LLSFSRSPP SATLSPLGAG PGSG-GGPAG GALPLESWLG ENSBTAP00000030951/1-351 SSMKLQD-P- -LLSFSRSPP AAALAPLGAG PGGGGGGPAG GALPLESWLG ENSTTRP00000006334/1-229 SSMKLLDSP- -LLSFNRSPP AAALAP---- ---------- ---------- BACU014900/1-237 -PLG------ ---------- ---------- ---------- ---------- 251 300 bmy_15390T0/1-261 ---------- ---------- ---------- ---------- ---------- ENSP00000334813/1-346 PPLPGGGATA LQSLPGFGPP AQSLPASYTP PPPPPPFLNS PPLGPGLQ-- ENSBTAP00000030951/1-351 PPLPAGGATA LQSLPGFGPP AQSLPASYTP PPPPPPFLNS PPLGPGLQPL ENSTTRP00000006334/1-229 ---------- ---------- ---------- ---------- ---------- BACU014900/1-237 ---------- ---------- ---------- ---------- ---------- 301 350 bmy_15390T0/1-261 --NPTGASQI FHAPHAPSLG QSVPICSS-- ---------- -----ISPLG ENSP00000334813/1-346 --PLAPPPPS Y--PCGPGFG DKFPLDEADP RNSSIAALRL KAKEHIQAIG ENSBTAP00000030951/1-351 GPPPPPPPPA Y--PCGPGFG DKFPLDEADP RNSSIAALRL KAKEHIQAIG ENSTTRP00000006334/1-229 --LVAGP--- ---------- ---------- ---------- ---------- BACU014900/1-237 --PPPPPPPA Y--PCGPGFG DKFPLDEADP RNSSIAALRL KAKEHIQAIG 351 400 bmy_15390T0/1-261 AP--SF ENSP00000334813/1-346 KPWQAL ENSBTAP00000030951/1-351 KPWQAL ENSTTRP00000006334/1-229 ------ BACU014900/1-237 KPWQAL