KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:08 2014 Check: 00 .. Name: bmy_02413T0/1-872 Len: 883 Check: 9262 Weight: 1.00 Name: ENSP00000269143/1-797 Len: 883 Check: 7735 Weight: 1.00 Name: ENSBTAP00000030993/1-805 Len: 883 Check: 4604 Weight: 1.00 Name: ENSTTRP00000003477/1-793 Len: 883 Check: 3905 Weight: 1.00 Name: BACU017072/1-718 Len: 883 Check: 7594 Weight: 1.00 // 1 50 bmy_02413T0/1-872 RGGARADAEE LGVAGEPYRA LSSESARPST AACPSASGPR DAPAAMAHRC ENSP00000269143/1-797 ---------- ---------- ---------- ---------- -----MAHRC ENSBTAP00000030993/1-805 ---------- ---------- ---------- ---------- -----MAHRC ENSTTRP00000003477/1-793 ---------- ---------- ---------- ---------- -----MAHRC BACU017072/1-718 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_02413T0/1-872 LLLWGRGACR TRGLPPMLVP GGRAGPTERL CLRKLYQYAT TQAKTSRSSL ENSP00000269143/1-797 LRLWGRGGCW PRGLQQLLVP GG-VGPGEQP CLRTLYRFVT TQARASRNSL ENSBTAP00000030993/1-805 LLLWGRGACR PRGMPPMLLP GGRTGSTERL YLRMLYRYAT TQAKTSRNSL ENSTTRP00000003477/1-793 LLLWGRGACR PRGLPPMLVP GGRAGPTERL CLRTLYRYAT TEAKTSGSSL BACU017072/1-718 ---------- ---------- ---------- --MTLYQYAT TQAKASRSSL 101 150 bmy_02413T0/1-872 LTDVIAAYQR FCSRPPKGFE KYFPNGKNGK KASEPKEVMG EKKEILAGQY ENSP00000269143/1-797 LTDIIAAYQR FCSRPPKGFE KYFPNGKNGK KASEPKEVMG EKKE------ ENSBTAP00000030993/1-805 LTDVIAAYQR LCSRPPKGFE KYFPNGKNGK KTSEPKEVMG EKKE------ ENSTTRP00000003477/1-793 LTDVIAAYQR FCSRPPKGFE KYFPNGKNGK KASEPKEVMG EKKE------ BACU017072/1-718 LTDVIAAYQR FCSRPPKGFE KYFPNGKNGK KASEPKEVMG EKKE------ 151 200 bmy_02413T0/1-872 QSYLTAYLNR SQRLPRVLLE EELVVVENEV GRKMILTGGP GSRRNVSF-- ENSP00000269143/1-797 --------SK PAATTR---- ----SSGGGG GGG----GKR GGKKDDSHWW ENSBTAP00000030993/1-805 --------PK PAAAPR---- ----PSGGGV GGG----GKR GGKKDDSHWW ENSTTRP00000003477/1-793 --------LK PAAAPR---- ----PSGGGV GGG----GKR GGKKDDSHWW BACU017072/1-718 --------PK PAAAPR---- ----PSGGGV GGG----GKR GGKKDDSHWW 201 250 bmy_02413T0/1-872 --LAQGDVPW DDKEFRMYFL WTALFWGGVL FYFLFKSSGR EITWKDFVNN ENSP00000269143/1-797 SRFQKGDIPW DDKDFRMFFL WTALFWGGVM FYLLLKRSGR EITWKDFVNN ENSBTAP00000030993/1-805 SRFQKGDIPW DDKEFKMYFL WTALFWGGFL FYFLFKSSGR EITWKDFANN ENSTTRP00000003477/1-793 SRFQKGDIPW DDKEFRMYFL WTALFWGGVL FYFLFKSSGR EITWKDFVNN BACU017072/1-718 SRFQK----- ---------- ---------- ---------- ---------- 251 300 bmy_02413T0/1-872 YLSKGVVDRL EVVNKRFVRV TFTPGKTPVD GQYVWFNIGS VDTFERNLET ENSP00000269143/1-797 YLSKGVVDRL EVVNKRFVRV TFTPGKTPVD GQYVWFNIGS VDTFERNLET ENSBTAP00000030993/1-805 YLSKGVVDRL EVVNKRFVRV TFTPGKTPVD GQYVWFNIGS VDTFERNLET ENSTTRP00000003477/1-793 YLSKGVVDRL EVVNKRFVRV TFTPGKTPVD GQYVWFNIGS VDTFERNLET BACU017072/1-718 ------VDRL EVVNKRFVRV TFTPGKTPVD GQYVWFNIGS VDTFERNLET 301 350 bmy_02413T0/1-872 LQ------QE LGIEGENRVP VVYIAESDGS FLLSMLPTVL IITFLLYTIR ENSP00000269143/1-797 LQ------QE LGIEGENRVP VVYIAESDGS FLLSMLPTVL IIAFLLYTIR ENSBTAP00000030993/1-805 LQ------QE LGIEGENRVP VVYIAESDGS FLLSMLPTVL IIAFLLYTIR ENSTTRP00000003477/1-793 LQ------QE LGIEGENRVP VVYIAESDGS FLLSMLPTVL IITFLLYTIR BACU017072/1-718 LQQXXXXXQE LGIEGENRVP VVYIAESDG- ----MLPTVL IIPSLLYTIR 351 400 bmy_02413T0/1-872 RGPAGIGRTG RGMGGLFSVG ETTAKVLKDE IDVKFKDVAG CEEAKLEIME ENSP00000269143/1-797 RGPAGIGRTG RGMGGLFSVG ETTAKVLKDE IDVKFKDVAG CEEAKLEIME ENSBTAP00000030993/1-805 RGPAGIGRTG RGMGGLFSVG ETTAKVLKDE IDVKFKDVAG CEEAKLEIME ENSTTRP00000003477/1-793 RGPAGIGRTG RGMGGLFSVG ETTAKVLKDE IDVKFKDVAG CEE-KLEIME BACU017072/1-718 RGPAGIGRTG RGMGGLFSVG ETTAKVLKDE IDVKFKDVAG CEEAKLEIME 401 450 bmy_02413T0/1-872 FVNFLKNPKQ YQDLGAKIPK GAILTGPPGT GKTLLAKATA GEANVPFITV ENSP00000269143/1-797 FVNFLKNPKQ YQDLGAKIPK GAILTGPPGT GKTLLAKATA GEANVPFITV ENSBTAP00000030993/1-805 FVNFLKNPKQ YQDLGAKIPK GAILTGPPGT GKTLLAKATA GEANVPFITV ENSTTRP00000003477/1-793 -VNL--KPKQ YQ-LGAKIPK GAILTGPPGT GKTLLAKATA GEANVPFITV BACU017072/1-718 FVNFLKNPKQ YQDLGAKIPK GAILTGPPGT GKTLLAKATA GEANVPFITV 451 500 bmy_02413T0/1-872 SGSEFLEMFV GVGPARVRDL FALARKNAPC ILFIDEIDAV GRKRGRGNFG ENSP00000269143/1-797 SGSEFLEMFV GVGPARVRDL FALARKNAPC ILFIDEIDAV GRKRGRGNFG ENSBTAP00000030993/1-805 SGSEFLEMFV GVGPARVRDL FALARKNAPC ILFIDEIDAV GRKRGRGNFG ENSTTRP00000003477/1-793 SGSEFLEMFV GVGPARVRDL FALARKNAPC ILFIDEIDAV GRKRGRGNFG BACU017072/1-718 SGSEFLEMFV GVGPARVRDL FALARKNAPC ILFIDEIDAV GRKRGRGNFG 501 550 bmy_02413T0/1-872 GQSEQENTLN QLLVEMDGFN TTTNVVILAG TNRPDILDPA LMRPGRFDRQ ENSP00000269143/1-797 GQSEQENTLN QLLVEMDGFN TTTNVVILAG TNRPDILDPA LLRPGRFDRQ ENSBTAP00000030993/1-805 GQSEQENTLN QLLVEMDGFN TTTNVVILAG TNRPDILDPA LMRPGRFDRQ ENSTTRP00000003477/1-793 GQSEQENTLN QLLVEMDGFN TTTNVVILAG TNRPDILDPA LMRPGRFDRQ BACU017072/1-718 GQSEQENTLN QLLVEMDGFN TTTNVVILAG TNRPDILDPA LMRPGRFDRQ 551 600 bmy_02413T0/1-872 IFIGPPDIKG RASIFKVHLR PLKLDSTLEK EKLARRLASL TPGFSGADVA ENSP00000269143/1-797 IFIGPPDIKG RASIFKVHLR PLKLDSTLEK DKLARKLASL TPGFSGADVA ENSBTAP00000030993/1-805 IFIGPPDIKG RASIFKVHLR PLKLDSTLEK EKLARKLASL TPGFSGADVA ENSTTRP00000003477/1-793 IFIGPPDIKG RASIFKVHLR PLKLDSTLEK EKLARRLASL IPGFSGADVA BACU017072/1-718 IFIGPPDIKG RASIFKVHLR PLKLDSTLEK EKLARRLASL TPGFSGADVA 601 650 bmy_02413T0/1-872 NVCNEAALIA ARHLSDSINQ KHFEQAIERV IGGLEKKTQV LQPEEKKTVA ENSP00000269143/1-797 NVCNEAALIA ARHLSDSINQ KHFEQAIERV IGGLEKKTQV LQPEEKKTVA ENSBTAP00000030993/1-805 NVCNEAALIA ARHLSDSINQ KHFEQAIERV IGGLEKKTQV LQPEEKKTVA ENSTTRP00000003477/1-793 NVCNEAALIA ARHLSDSINQ KHFEQAIERV IGGLEKKTQV LQPEEKKTVA BACU017072/1-718 NVCNEAALIA ARHLSDSINQ KHFEQAIERV IGGLEKKTQV LQPEEKKTVA 651 700 bmy_02413T0/1-872 YHEAGHAVAG WYLEHADPLL KVSIIPRGKG LGYAQYLPKE QYLYTKEQLL ENSP00000269143/1-797 YHEAGHAVAG WYLEHADPLL KVSIIPRGKG LGYAQYLPKE QYLYTKEQLL ENSBTAP00000030993/1-805 YHEAGHAVAG WYLEHADPLL KVSIIPRGKG LGYAQYLPRE QYLYTREQLL ENSTTRP00000003477/1-793 YHEAGHAVAG WYLEHADPLL KVSIIPRGKG LGYAQYLPKE QYLYTKEQLL BACU017072/1-718 YHEAGHAVAG WYLEHADPLL KVSIIPRGKG LGYAQYLPKE QYLYTKEQLL 701 750 bmy_02413T0/1-872 DRMCMTLGGR VSEEIFFGRI TTGAQDDLRK VTQSAYAQIV QFGMNEKVGQ ENSP00000269143/1-797 DRMCMTLGGR VSEEIFFGRI TTGAQDDLRK VTQSAYAQIV QFGMNEKVGQ ENSBTAP00000030993/1-805 DRMCMTLGGR VSEEIFFGRI TTGAQDDLRK VTQSAYAQIV QFGMNEKVGQ ENSTTRP00000003477/1-793 DRMCMTLGGR VSEEIFFGRI TTGAQDDLRK VTQSAYAQIV QFGMNEKVGQ BACU017072/1-718 DRMCMTLGGR VSEEIFFGRI TTGAQDDLRK VTQSAYAQIV QFGMNEKVGQ 751 800 bmy_02413T0/1-872 ISFDLPRQGD MVLEKPYSEA TARLIDDEVR ILINDAYKRT VALLTEKKAD ENSP00000269143/1-797 ISFDLPRQGD MVLEKPYSEA TARLIDDEVR ILINDAYKRT VALLTEKKAD ENSBTAP00000030993/1-805 ISFDLPRQGD MVLEKPYSEA TARLIDDEVR ILINDAYKRT VALLTEKKAD ENSTTRP00000003477/1-793 ISFDLPRQGD MVLEKPYSEA TARLIDDEVR ILINDAYKRT VALLTEKKAD BACU017072/1-718 ISFDLPRQGD MVLEKPYSEA TARLIDDEVR ILINDAYKRT VALLTEKKAD 801 850 bmy_02413T0/1-872 VEKVALLLLE KEVLDKNDMV ELLGPRPFAE KSTYEEFVEG TGSLDEDTSL ENSP00000269143/1-797 VEKVALLLLE KEVLDKNDMV ELLGPRPFAE KSTYEEFVEG TGSLDEDTSL ENSBTAP00000030993/1-805 VEKVALLLLE KEVLDKNDMV ELLGPRPFAE KSTYEEFVEG TGSLDEDTSL ENSTTRP00000003477/1-793 VEKVALLLLE KEVLDKNNMV ELLGPRPFAE KSTYEEFVEG TGSLDEDTSL BACU017072/1-718 VEKVALLLLE KEVLDKNDMV ELLGPRPFAE KSTYEEFVEG TGSLDEDTSL 851 900 bmy_02413T0/1-872 PEGLKDWNRE RE-GSEEPSG EKAASQVQGA GPA ENSP00000269143/1-797 PEGLKDWNKE REKEKEEPPG EKVAN----- --- ENSBTAP00000030993/1-805 PEGLKDWNRE RE-GSEEPSG EKVTSPVQGA GPA ENSTTRP00000003477/1-793 PEGLKDWNRE RE-VSEEPSG EKAASQ---- --- BACU017072/1-718 PEGLKDWNRE RE-GSEEPSG EKAASQVQGA GPA