KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:13 2014 Check: 00 .. Name: ENSP00000269214/1-840 Len: 1001 Check: 850 Weight: 1.00 Name: ENSBTAP00000031022/1-841 Len: 1001 Check: 8809 Weight: 1.00 Name: ENSTTRP00000004547/1-845 Len: 1001 Check: 6449 Weight: 1.00 Name: bmy_04003T0/1-778 Len: 1001 Check: 2327 Weight: 1.00 Name: BACU017871/1-884 Len: 1001 Check: 7023 Weight: 1.00 // 1 50 ENSP00000269214/1-840 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031022/1-841 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004547/1-845 ---------- ---------- ---------- ---------- ---------- bmy_04003T0/1-778 MVAERSILSC GKGNKWQHKR KSILIDYFIK RKWLDKNFKR TDSTNKERNV BACU017871/1-884 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000269214/1-840 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031022/1-841 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004547/1-845 ---------- ---------- ---------- ---------- ---------- bmy_04003T0/1-778 LTVRHVSNES KSNNCRLQKK KVFKNFVKTD RLLLSNSTRH STFTTTRTQK BACU017871/1-884 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000269214/1-840 ---------- ---MMSIQEK SKENSSKVTK KSDDKNSETE IQDSQKNLAK ENSBTAP00000031022/1-841 ---------- ---MMSIQEK SKENSSSVIK KNEDKNLETQ VQGSQKNLAK ENSTTRP00000004547/1-845 ---------- ---MMSIQEK SKENSSSVIK KSEDKNLETQ IQGSQKNLVK bmy_04003T0/1-778 SQKLLRKGGP YSGMMSIQEX SKENSSSVIK KSEDKNLETQ IQGSQKNLVK BACU017871/1-884 ---------- ---MMSIQEK SKENSSSVIK KSEDKNLETQ IQGSQKNLVK 151 200 ENSP00000269214/1-840 KSGPKETIKS QAKSSSESKI NQP-ELETRM STRSSKAASN DKATKSINKN ENSBTAP00000031022/1-841 KSDPKEAIKS LVKSSNESKV NQP-ELGTCM STRS--ASTD KRASKSTNKN ENSTTRP00000004547/1-845 KSGPKEAIKS LVKSSNESKV NQPDELGTCM STRS--ASSD KKASKPINKN bmy_04003T0/1-778 KSGPKEAIKS LVKSSNESKV NQP-ELGTCM STRS--ASSD KKASKPINKN BACU017871/1-884 KSGPKEAIKS LVKSSNESKV NQP-ELGTCM STRS--ASSD KKASKPINKN 201 250 ENSP00000269214/1-840 TVTVRGYSQE ST--KKKLSQ KKLVHENPKA NEQLNRRSQR LQQLTEVSRR ENSBTAP00000031022/1-841 MVTVKGHSQQ ESTKQKKISQ KKTVHETPKS SEQLNRRSQR LQQLTEVSTR ENSTTRP00000004547/1-845 MVTVKGHSQQ ESTKQKKLSQ KKSVHKTPKS NEQLNRRSQR LQQLTEVSTR bmy_04003T0/1-778 MVTVKGHSQQ ESTKQKKLSQ KKSVHKTPKS NEQLNRRSQR LQQLTEVSTR BACU017871/1-884 MVTVKGHSQQ ESTKQKKLSQ KKSVHKTPKS NEQLNRRSQR LRQLTEVSTR 251 300 ENSP00000269214/1-840 SLRSREIQGQ VQAVKQSLPP TKKEQCSSTQ SKSN--KTSQ KHVKRKVLEV ENSBTAP00000031022/1-841 SLRSREIQGQ AQAVKQSLPP TKKEHCNNTQ SKSNKAKTNQ KHVKRKVLEI ENSTTRP00000004547/1-845 SLRNRDIQGQ VQAVKQSLPP TKKEHRSNTK SKSNKVKTNQ KHVKRKVLEI bmy_04003T0/1-778 SLRSRDIQGQ VQAVKQSLPP TKKEHCSNTQ SKSNKVKTNQ KHVKRKVLEI BACU017871/1-884 SLRSRDIQGQ VQAVKQSLPP TKKEHCSNTQ SKSNKVKTNQ KHVKRKVLEI 301 350 ENSP00000269214/1-840 KSDSKEDENL VINEVINSPK GKKRKVEHQT ACACSSQCTQ GSEKCPQKTT ENSBTAP00000031022/1-841 KSDSKEEENS VTNEAINSPK GKKRKVEHQT AYTSGSQCIK GSEKCLE-NT ENSTTRP00000004547/1-845 KSDSKEDENS VTNEVINSPK GKKRKVEHQT ASTCSSQCIK VSEKCLQKNT bmy_04003T0/1-778 KSDSKEDENS VTNEVINSPK GKKRKVEHQP AYTCSSQCIK GSEKCLQKNT BACU017871/1-884 KSDSKEDENS VTNEVINSPK GKKRKVEHQT AYTCSSECIK GSETCLQKNT 351 400 ENSP00000269214/1-840 RRDETKPVPV -TSEVKRSKM ATSVVPKKNE MKKSVHTQVN TNTTLPKSPQ ENSBTAP00000031022/1-841 RKEETKS--- -SSEIKRSKV ATSVVSKKNE MKKSVHTQVN NSAKSQKSPQ ENSTTRP00000004547/1-845 RKEETKSVPV TSSEIKRSKM AASVVSKKNE MKKSVHTQVN TSAKSQKSPQ bmy_04003T0/1-778 RKEETKSVPI TSSEIKRSKM ATSVVSKKNE MKKSVHTQVN TSAKSQKSPQ BACU017871/1-884 RKEETKSVPI TSSEIKRSKM ATSVVS-KNE MKKSVHTQVN TSAKSQKSSQ 401 450 ENSP00000269214/1-840 PSVPEQS-DN ELEQAGKSKR GSILQLCEEI AGEIESDNVE VKKESSQMES ENSBTAP00000031022/1-841 PSVPEQTGDN GLEQAGTSKR GSILQLCEEI AGEIESDTVE VKKESSQMES ENSTTRP00000004547/1-845 PSVPEQSTDN ELEQAGKSKR GSILQLCEEI AGEIESDTVE VKKESSQVEN bmy_04003T0/1-778 PSVPEQSIDN ELEQAGKSKR GSILQLCEEI AGEIESDTVE VKKESSQMEN BACU017871/1-884 PSVPEQSIDN ELEQAGKSKR GSILQLCEEI AGEIESDTVE VKKESSQMEN 451 500 ENSP00000269214/1-840 VKEEKPTEIK LEETSVERQI LHQKETNQDV QCNRFFPSRK TKPVKCILNG ENSBTAP00000031022/1-841 VKEEKPTEIK LEETETERQI LHQKEANQDV QCNRFFPSRK TKPVKCILNG ENSTTRP00000004547/1-845 VKEEKPTEIK LEETDTERQI LHQKETSQDV QCNRFFPSRK TKPVKCILNG bmy_04003T0/1-778 VKEEKPTEIK LEETDTERQI LHQKETSQDV QCNRFFPSRK TKPVKCILNG BACU017871/1-884 VKEEKPTEIK LEETDTERQI LHQKETSQDI QCNRFFPSRK TKPVKCILNG 501 550 ENSP00000269214/1-840 INSSAKKNSN WTKIKLSKFN SVQHNKLDSQ VSPKLGLLRT SFSPPALEMH ENSBTAP00000031022/1-841 INNSTKKNSN WTKIKLSKFN SVQQNKLDSQ FSPKSGLLRT SFSLPALETH ENSTTRP00000004547/1-845 INNATKKNSN WTKIKLSKFN SVQQNKLDSQ FSPKLCLLRP SFSLPALEMH bmy_04003T0/1-778 INNSTKKNSN WTKIKLSKFN SVQQNKLDSQ FSPKLCLLRP SFSLPALEMH BACU017871/1-884 INNSTKKNSN WTKIKLSKFN SVQQNKLDSQ FSPKLCLLQP SFSLPALEMH 551 600 ENSP00000269214/1-840 HPVTQSTFLG TKLH-DRNIT CQQEKMKEIN SEEVKINDIT VEINKTTERA ENSBTAP00000031022/1-841 QQVTQSTFLG SKPYGDKNKA CQQEEMKEVN SEDVTPNDIT VEMNKIPKKA ENSTTRP00000004547/1-845 HPVTQSTFLG SKPHDDKNKA CQQEEMKEIN SEEVKLNDIT VDINKTPQKP bmy_04003T0/1-778 HPVTESTFLG SKPHDDKNKA CQQEEMKEIN SEEVKLNDIT VDINKTPKKP BACU017871/1-884 HPGTQSTFLG SKPHDDKNKA CQQEEMKEIN SEEVKLNDIT VDINNTPKKP 601 650 ENSP00000269214/1-840 PENCHLANEI K-PSDPPLDN QMKHSFDSAS NKNFSQCLES KLENSPVEN- ENSBTAP00000031022/1-841 PENCHLGNQI KPPPDQPLDK QKKDAFESTP DKNCSLCLES KLENNPVEN- ENSTTRP00000004547/1-845 PENCCLGNQI KPPPDQPLDN QKKDSFESTP DKNCSLCLES KLENNPVENT bmy_04003T0/1-778 PENCCLGNQI KPPPDQPLDN QKKDSFESTP DKNCSLCLES KLENNPVENT BACU017871/1-884 PENCHLGNQI KPPPDQPLDN QKKDSFESTP DKNCSLCLEC KLENNPVENT 651 700 ENSP00000269214/1-840 VTAASTLLSQ AKIDTGENKF PGSAPQQHSI LSNQTSKSSD NRETPRNHSL ENSBTAP00000031022/1-841 ATTVSTLLSQ AKIDTGENKF PGSIPKQHSV LCNQTSKTSD NREIPPNHSW ENSTTRP00000004547/1-845 TTTVSTLLSQ AKIDTGESKF PGSAPKQHNI LTNQTSKTSD NREIPPNHSW bmy_04003T0/1-778 TTTVSTLLSQ AKIDTGESKF PGSAPKQHNI LTNQTSKTSD NREIPPNHSW BACU017871/1-884 TTTVSTLLSQ AKIDTGESKF PGSAPKQHNI LTNQTSKTSD NREIPPNYSW 701 750 ENSP00000269214/1-840 PKCNSHLEIT IPKDLKLKEA EKTDEKQLII DAGQKRFGAV SCNVCGMLYT ENSBTAP00000031022/1-841 PKCNSHLEIT IPKDLKLKEA EKADEKQLII DAGQKRFGAV SCNVCGMLYT ENSTTRP00000004547/1-845 PKCNSHLEIT IPKELKLKEA EKADEKQLII DAGQKRFGAV SCNVCGMLYT bmy_04003T0/1-778 PKCNSHLEIT IPKELKLKEA EKADEKQLII DAGQKRFGAV SCSVCGMLYT BACU017871/1-884 PKCNSHLEIT IPKELKLKEA EKADEKQLII DAGQKRFGAV SCSVCGMLYT 751 800 ENSP00000269214/1-840 ASNPEDETQH LLFHNQFISA VKYVGWKKER ILAEYPDGRI IMVLPEDPKY ENSBTAP00000031022/1-841 ASNPEDETQH LLFHNQFISA VKYVGWKKER ILAEYPDGRI IMVLPEDPKY ENSTTRP00000004547/1-845 ASNPEDETQH LLFHNQFISA VKYVGWKKER ILAEYPDGRI IMVLPEDPKY bmy_04003T0/1-778 ASNPEDETQH LLFHNQFISA VKYV------ ---------- ---------- BACU017871/1-884 ASNPEDETQH LLFHNQFISA VKYVGWKKER ILAEYPDGRI IMVLPEDPKY 801 850 ENSP00000269214/1-840 ALKKVDEIRE MVDNDLGFQQ APLMCYSRTK TLLFISNDKK VVGCLIAEHI ENSBTAP00000031022/1-841 ALKKVDEIRE MVDNDLGFQQ APLMCYSRTK TLLFISNDKK VVGCLIAEHI ENSTTRP00000004547/1-845 A---VDEIRE MVDNDLGFQQ APLMCYSRTK TLLFISNDKK VVGCLIAEHI bmy_04003T0/1-778 ---------- ---------- ---------- ---------- ---------- BACU017871/1-884 ALKKVDEIRE MVDNDLGFQQ APLMCYSRTK TLLFISNDKK VVGCLIAEHI 851 900 ENSP00000269214/1-840 QWGYRVIEEK LPVIRSEEEK VRFERQKAWC CSTLPEPAIC GISRIWVFSM ENSBTAP00000031022/1-841 QWGYRVIEEK LPVIRSEEEK VRFERQKAWC CSTLPEPAIC GISRIWVFSM ENSTTRP00000004547/1-845 QWGYRVIEEK LPVIRSEEEK VRFERQKAWC CSTLPEPAIC GISRIWVFSM bmy_04003T0/1-778 ---------- ---------- ---------- --------VS GI-------- BACU017871/1-884 QWGYRVIEEK LPVIRSEEEK VRFERQKAWC CSTLPEPAIC GISRIWVFSM 901 950 ENSP00000269214/1-840 MRRKKIASRM IECLRSNFIY GSYLSKEEIA FSDPTPDGKL FATQYCGTGQ ENSBTAP00000031022/1-841 MRRKKIASRM IECLRSNFIY GSYLSKEEIA FSDPTPDGKL FATQYCGTGQ ENSTTRP00000004547/1-845 MRRKKIASRM IECLRSNFIY GSYLSKEEIA FSDPTPDGKL FATQYCGTGQ bmy_04003T0/1-778 ---------- ---------- ---------- ---------- ---------- BACU017871/1-884 MRRKKIASRM IECLSSNFIY GSYLSKEEIA FSDPTPDGKL FATQYCGTGK 951 1000 ENSP00000269214/1-840 FLVYNFINGQ NST------- ---------- ---------- ---------- ENSBTAP00000031022/1-841 FLVYNFINGQ NST------- ---------- ---------- ---------- ENSTTRP00000004547/1-845 FLVYNFINGQ NST------- ---------- ---------- ---------- bmy_04003T0/1-778 ---HDF---- ---------- ---------- ---------- ---------- BACU017871/1-884 PVLHCFINIL LDSEEAYGPV AMTEDKPEEC LFPDVVQLYV VEYKGERPNI 1001 1050 ENSP00000269214/1-840 - ENSBTAP00000031022/1-841 - ENSTTRP00000004547/1-845 - bmy_04003T0/1-778 - BACU017871/1-884 V