KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:16 2014 Check: 00 .. Name: ENSTTRP00000012108/1-475 Len: 504 Check: 7382 Weight: 1.00 Name: BACU020000/1-483 Len: 504 Check: 4043 Weight: 1.00 Name: ENSP00000325548/1-475 Len: 504 Check: 6255 Weight: 1.00 Name: bmy_02525T0/1-490 Len: 504 Check: 8626 Weight: 1.00 Name: ENSBTAP00000031070/1-475 Len: 504 Check: 4310 Weight: 1.00 // 1 50 ENSTTRP00000012108/1-475 MSALTALFKY VDENQDRYIK KLAEWVAIQS VSAWPEKRGE IRRMMEVAAA BACU020000/1-483 MSALTALFKY VDENQDRYVK KLAEWVAIQS VSAWPEKRGE IRRMMEVAAA ENSP00000325548/1-475 MAALTTLFKY IDENQDRYIK KLAKWVAIQS VSAWPEKRGE IRRMMEVAAA bmy_02525T0/1-490 MSALTALFKY VDENQDRYIK KLAEWVAIQS VSAWPEKRGE IRRMMEVAAA ENSBTAP00000031070/1-475 MSALTTLFKY VDENQDRYVK KLAEWVAIQS VSAWPEKRGE IRRMMEVAAA 51 100 ENSTTRP00000012108/1-475 DIKKLGGSVE LVDIGNQKLP DGSEIPLPPI LLGTLGSDPQ KKTVCVYGHL BACU020000/1-483 DIKQLGGSVE LVDIGNQKLP DGSEIPLPPI LLGTLGSDPQ KKTVCIYGHL ENSP00000325548/1-475 DVKQLGGSVE LVDIGKQKLP DGSEIPLPPI LLGRLGSDPQ KKTVCIYGHL bmy_02525T0/1-490 DIKQLGGSVE LVDIGNQKLP DGSEIPLPPI LLGTLGSDPQ KKTVCIYGHL ENSBTAP00000031070/1-475 DIKQLGGSVQ LVDIGTQKLP DGSEIPLPPI LLGKLGSDPQ KKTVCIYGHL 101 150 ENSTTRP00000012108/1-475 DVQPAALEDG WDSEPFTLVE RD-------- -------GKL YGRGATDDKG BACU020000/1-483 DVQPAALEDG WDSEPFTLVE RD-------- -------GKL YGRGATDDKG ENSP00000325548/1-475 DVQPAALEDG WDSEPFTLVE RD-------- -------GKL YGRGSTDDKG bmy_02525T0/1-490 DVQPAALEDG WDSEPFTLVE RDGRDDSPRT RTCGICLGKL YGRGATDDKG ENSBTAP00000031070/1-475 DVQPAALEDG WDSEPFTLVE RD-------- -------GKL FGRGATDDKG 151 200 ENSTTRP00000012108/1-475 PVAGWMNALE AFQKTCQEVP VNVRFCLEGM EESGSEGLDA LIFAQKDAFF BACU020000/1-483 PVAGWMNALE AFQKTCQEVP VNVRFCLEGM EESGSEGLDA LIFAQKDVFF ENSP00000325548/1-475 PVAGWINALE AYQKTGQEIP VNVRFCLEGM EESGSEGLDE LIFARKDTFF bmy_02525T0/1-490 PVAGWMNALE AFQKTCQEVP VNIRFCLEGM EESGSEGLDA LIFAQKDVFF ENSBTAP00000031070/1-475 PVAGWINALE AFQKTKQEVP VNVRFCLEGM EESGSEGLDA LIFAQKDAFF 201 250 ENSTTRP00000012108/1-475 KDVDYVCISD NYWLGKNKPC ITYGLRGICY FFIEVECSNR DLHSGVYGGS BACU020000/1-483 KDVDYVCISD NYWLGKNKPC ITYGLRGICY FFIEVECSNR DLHSGVYGGS ENSP00000325548/1-475 KDVDYVCISD NYWLGKKKPC ITYGLRGICY FFIEVECSNK DLHSGVYGGS bmy_02525T0/1-490 KDVDYVCISD NYWLGKDKPC ITYGLRGICY FFIEVECSNR DLHSGVYGGS ENSBTAP00000031070/1-475 KDVDYVCISD NYWLGKNKPC ITYGLRGICY FFIEVECSDK DLHSGVYGGS 251 300 ENSTTRP00000012108/1-475 VHEAMTDLIM LMXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU020000/1-483 VHEAMTDLIM LMG----ERG LHHRVAVGRE VGAGTAS--R LLHAFCPSLP ENSP00000325548/1-475 VHEAMTDLIL LMGSLVDKRG NILIPGINEA VAAVTEEEHK LYDDIDFDIE bmy_02525T0/1-490 VHEAMTDLIM LMGCLMDRKG KILIPGISEA VASVTDDELE LYDKIDFDLE ENSBTAP00000031070/1-475 VHEAMTDLIM LMGCLMDKKG KILIPGISEA VAPVTEEELE LYDKIDFDLE 301 350 ENSTTRP00000012108/1-475 XXXXXXXXXX XXXXX----- ------XKDI LMHRWRYPSL SFHGIEGAFS BACU020000/1-483 PPATDWPAGL LREQAVPSPT HFVVFLQKDI LMHRWRYPSL SLHGIEGAFS ENSP00000325548/1-475 EFAKDVGAQI LLHSH----- ------KKDI LMHRWRYPSL SLHGIEGAFS bmy_02525T0/1-490 EYARDVGTQT LLHGC----- ------KKDI LMHRWRYPSL SLHGIEGAFS ENSBTAP00000031070/1-475 EYARDVGAGT LLHGC----- ------KKDI LMHRWRYPSL SLHGIEGAFS 351 400 ENSTTRP00000012108/1-475 GSGAKTVIPR KVVGKFSIRL VPDMTPEVVT EQ---VTSYL TKKFAELDSP BACU020000/1-483 GSGVKTVIPR KVIGKFSIRL VPDMTPEVVT EQARGVTSYL TKKFAELHSP ENSP00000325548/1-475 GSGAKTVIPR KVVGKFSIRL VPNMTPEVVG EQ---VTSYL TKKFAELRSP bmy_02525T0/1-490 GSGAKTVIPR KVIGKFSIRL VPDMTPEVVT EQ---VTSYL TKKFAELHSP ENSBTAP00000031070/1-475 GSGAKTVIPR KVVGKFSIRL VPNMTPEVVS EQ---VTSYL TKKFAELHSP 401 450 ENSTTRP00000012108/1-475 NKFKVYLGHG GKPWVSDFNH PHYLAGRRAL KTVFGVEPDL TREGGSIPVT BACU020000/1-483 NKFKVYLSHG GKPWVSDFNH PHYLAGRRAL KTVFGVEPDL TREGGSIPVT ENSP00000325548/1-475 NEFKVYMGHG GKPWVSDFSH PHYLAGRRAM KTVFGVEPDL TREGGSIPVT bmy_02525T0/1-490 NKFKVYLGHG GKPWVSDFNH PHYLAGRRAL KTVFGVEPDL TREGGSIPVT ENSBTAP00000031070/1-475 NKFKVYMGHG GKPWVSDFNH PHYLAGRRAL KTVFGVEPDL TREGGSIPVT 451 500 ENSTTRP00000012108/1-475 LTFQEATGKN VMLLPVGSAD DGAHSQNEKL NRHNYIEGTK MLAAYLYEVS BACU020000/1-483 LTFQEATGKN VMLLPVGSAD DGAHSQNEKL NRHNYIEGTK MLAAYLYEVS ENSP00000325548/1-475 LTFQEATGKN VMLLPVGSAD DGAHSQNEKL NRYNYIEGTK MLAAYLYEVS bmy_02525T0/1-490 LTFQEATGKN VMLLPVGSAD DGAHSQNEKL NRHNYIEGTK MLAAYLYEVS ENSBTAP00000031070/1-475 LTFQEATGKN VMLLPVGSAD DGAHSQNEKL NRRNYIEGTK MLAAYLYEVS 501 550 ENSTTRP00000012108/1-475 QLKN BACU020000/1-483 QLKN ENSP00000325548/1-475 QLKD bmy_02525T0/1-490 QLKN ENSBTAP00000031070/1-475 QLKD