KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:18 2014 Check: 00 .. Name: ENSTTRP00000002531/1-901 Len: 977 Check: 9679 Weight: 1.00 Name: bmy_04281T0/1-587 Len: 977 Check: 6905 Weight: 1.00 Name: BACU006348/1-283 Len: 977 Check: 6225 Weight: 1.00 Name: ENSP00000384408/1-491 Len: 977 Check: 7538 Weight: 1.00 Name: ENSBTAP00000031225/1-977 Len: 977 Check: 8963 Weight: 1.00 // 1 50 ENSTTRP00000002531/1-901 ---------- ---------- ---------- ---------- ---------- bmy_04281T0/1-587 MSAGPGCEPC TKRPRWGAAA TSPPAASDAR SFPGRRRRVL DPKDAPVQFR BACU006348/1-283 ---------- ---------- ---------- ---------- ---------- ENSP00000384408/1-491 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031225/1-977 MSAGPGCEPC TKRPRWDAAA TSPPAASDAR SFPGRQRRVL DSKDAPVQFR 51 100 ENSTTRP00000002531/1-901 ---------- ---------- ----FKQKTI TSWMDTKGLK TAESESLHSK bmy_04281T0/1-587 VPPSSSGCVP GRAGPHRGSA TSLVFKQKTI TSWMDTKGLK TAESESLHSK BACU006348/1-283 ---------- ---------- ---------- ---------- ---------- ENSP00000384408/1-491 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031225/1-977 VPPSSSGCAL GRAGQHRGSA TSLVFKQKTI TSWMDTKGIK TVESESLHSK 101 150 ENSTTRP00000002531/1-901 ENNNTREESM MSSVQKDNFY QHNMEKLENV SQLGFDKSPV EKSTQYLNQH bmy_04281T0/1-587 ENNNTREESM MSSVQKDNFY QHNMEKLENV SQLGFDKSPV EKSTQYLNQH BACU006348/1-283 ---------- ---------- ---------- ---------- ---------- ENSP00000384408/1-491 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031225/1-977 ENNNTREESM MSSVQKDNFY QHNMEKLENV SQLGFDKSPV EKGTQYLKQH 151 200 ENSTTRP00000002531/1-901 QTAAICKWQK EGKHSERLLE SEPPIVTLVP EQFSNANIDQ SPQNDDHSDT bmy_04281T0/1-587 QTAAICKWQK EGKHSERLLE SEPPIVTLVP EQFSNANIDQ SPQNDDHSDT BACU006348/1-283 ---------- ---------- ---------- ---------- ---------- ENSP00000384408/1-491 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031225/1-977 QTAAMCKWQN EGPHSERLLE SEPPAVTLVP EQFSNANVDQ SSPKDDHSDT 201 250 ENSTTRP00000002531/1-901 NSEESRDNQQ FLTPIKLANA KQTTEDEQGV EARSHQKCSK TCHPAEDCAG bmy_04281T0/1-587 NSEESRDNQQ FLTPIKLANA KQTTEDEQGV EARSHQKCSK ACHPAXDCAA BACU006348/1-283 ---------- ---------- ---------- ---------- ---------- ENSP00000384408/1-491 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031225/1-977 NSEESRDNQQ FLTHVKLANA KQTMEDEQGR EARSHQKCGK ACHPAEACAG 251 300 ENSTTRP00000002531/1-901 CQQEETDVVP ESPLSDIGSE DVGTGLKNAN KLSRQESSLG NSPAFEKESE bmy_04281T0/1-587 CQQEETDVVP ESPLSDIGSE DVGTGLKNAN KLSRQESSLG NSPAFEKESE BACU006348/1-283 ---------- ---------- ---------- ---------- ---------- ENSP00000384408/1-491 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031225/1-977 CQQEETDVVS ESPLSDTGSE DVGTGLKNAN RLNRQESSLG NSPPFEKESE 301 350 ENSTTRP00000002531/1-901 PESPMDVDNS KNSCQDSEAD EETSPGFDEQ ED-SSAQTAN KPSRFQVREA bmy_04281T0/1-587 PESPMDVDNS KNSCQDSEAD EETSPGFDEQ ED-SSTQTAN KPSRFQVREA BACU006348/1-283 ----MDVDNS KNSCQDSEAD EETSPGFDEQ ED-SSTQTAN KPSRFQVREA ENSP00000384408/1-491 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031225/1-977 PESPMDVDNS KNSCQDSEAD EETSPGFDEQ EDSSSAQTAN KPSRFQPREA 351 400 ENSTTRP00000002531/1-901 DTELRKWSST KGSEIRLHFQ FE-GESRAGM NDLNVRLPGS TSSLNVEGRN bmy_04281T0/1-587 DTELRKRSSA KGGEIRLHFQ FE-GESRAGM NDLNVKLPGS TSSLNVECRN BACU006348/1-283 DTELRKRSSA KGGEIRLHFQ FE-GESRAGM NDLNVKLPGS TSSLNVECRN ENSP00000384408/1-491 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031225/1-977 DTELRKRSSA KGGEIRLHFQ FEGGESRAGM NDVNAKRPGS TSSLNVECRN 401 450 ENSTTRP00000002531/1-901 SKQHGKKDSK ITDHFMRMPK AEDKRKEQCE IKHQRTERKI PKYIPPHLSP bmy_04281T0/1-587 SKQHGKKDSK ITDHFMRMPK AEDKRKEQCE IKHQRTERKI PKYIPPHLSP BACU006348/1-283 SKQHGKKDSK ITDHFMRMPK AEDKRKEQCE IKHQRTERKI PKYIAPHLSP ENSP00000384408/1-491 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031225/1-977 SKQHGRKDSK ITDHFMRVPK AEDKRKEQCE MKHQRTERKI PKYIPPHLSP 451 500 ENSTTRP00000002531/1-901 DKKWLGTPIE EMRRMPRCGV RLPPLRPSAN HTVTIRXXXX XXXXXXXXXX bmy_04281T0/1-587 DKKWLGTPIE EMRRMPRCGI RLPPLRPSAN HTVTIRVDLL RAGEVPKPFP BACU006348/1-283 DKKWLGTPIE EMRRMPRCGI RLPPLRPSAN HTVTIRVDLL RAGEVPKPFP ENSP00000384408/1-491 ---------- ---------- ---------- ------VDLL RAGEVPKPFP ENSBTAP00000031225/1-977 DKKWLGTPIE EMRRMPRCGI RLPPLRPSAN HTVTIRVDLL RIGEVPKPFP 501 550 ENSTTRP00000002531/1-901 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04281T0/1-587 THFKDLWDNK HVKMPCSEQN LYPVEDENGE RTAGSRWELI QTALLNKFSR BACU006348/1-283 THFKDLWDNK HVKMPCSEQN LYPVEDENGE RTAGSRWELI QTALLNKFSR ENSP00000384408/1-491 THYKDLWDNK HVKMPCSEQN LYPVEDENGE RTAGSRWELI QTALLNKFTR ENSBTAP00000031225/1-977 THFKDLWDNK HVKMPCSEQN LYPVEDENGE RAAGSRWELI QTALLNRLTR 551 600 ENSTTRP00000002531/1-901 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04281T0/1-587 PQNLKDAILK YNVAYSKKWD FTALVDFWDK V--------- ---------- BACU006348/1-283 PQNLKDAILK YNVAYSKKWD FTALVDFWDK V--------- ---------- ENSP00000384408/1-491 PQNLKDAILK YNVAYSKKWD FTALIDFWDK VLEEAEAQHL YQSILPDMVK ENSBTAP00000031225/1-977 PQNLKDAILK YNVAYSKKWD FTALIDFWDK VLEEAEAQHL YQSILPDMVK 601 650 ENSTTRP00000002531/1-901 XXXXXXXXXX XPIPLLKQKM NHSITMSQEQ IASLLANAFF CTFPRRNAKM bmy_04281T0/1-587 ---------- ---------- ---------- ---------- ---------- BACU006348/1-283 ---------- ---------- ---------- ---------- ---------- ENSP00000384408/1-491 IALCLPNICT QPIPLLKQKM NHSITMSQEQ IASLLANAFF CTFPRRNAKM ENSBTAP00000031225/1-977 IALCLPNICT QPIPLLKQKM NHSITMSQEQ IASLLANAFF CTFPRRNAKM 651 700 ENSTTRP00000002531/1-901 KSEYSSYPDI NFNRLFEGRS SRKPEKLKTL FCYFRRVTEK KPTGLVTFTR bmy_04281T0/1-587 ---------- ---------- ---------- ---------- ---------- BACU006348/1-283 ---------- ---------- ---------- ---------- ---------- ENSP00000384408/1-491 KSEYSSYPDI NFNRLFEGRS SRKPEKLKTL FCYFRRVTEK KPTGLVTFTR ENSBTAP00000031225/1-977 KSEYSSYPDI NFNRLFEGRS SRKPEKLKTL FCYFRRVTEK KPTGLVTFTR 701 750 ENSTTRP00000002531/1-901 QSLEDFPEWE RCEKLLTRLH VTYEGTIEGN GQGMLQVDFA NRFVGGGVTS bmy_04281T0/1-587 ---------- ---------- ---------- ---------- ---------- BACU006348/1-283 ---------- ---------- ---------- ---------- ---------- ENSP00000384408/1-491 QSLEDFPEWE RCEKPLTRLH VTYEGTIEEN GQGMLQVDFA NRFVGGGVTS ENSBTAP00000031225/1-977 QSLEDFPEWE RCEKLLTRLH VTYEGTIEGN GQGMLQVDFA NRFVGGGVTS 751 800 ENSTTRP00000002531/1-901 AGLVQEEIRF LINPELIVSR LFTEVLDHNE CLIITGTEQY SEYTGYAETY bmy_04281T0/1-587 ---------- ---------- ---------- ---------- ---------- BACU006348/1-283 ---------- ---------- ---------- ---------- ---------- ENSP00000384408/1-491 AGLVQEEIRF LINPELIISR LFTEVLDHNE CLIITGTEQY SEYTGYAETY ENSBTAP00000031225/1-977 AGLVQEEIRF LINPELIVSR LFTEVLDHNE CLIITGTEQY SEYTGYAETY 801 850 ENSTTRP00000002531/1-901 RWARSHEDRS ERDDWQRRGT EIVAIDALHF RRYLDQFVPE KIRRELNKXX bmy_04281T0/1-587 ---------- ---------- ---------- ---------- --------EV BACU006348/1-283 ---------- ---------- ---------- ---------- --------EV ENSP00000384408/1-491 RWSRSHEDGS ERDDWQRRCT EIVAIDALHF RRYLDQFVPE KMRRELNKAY ENSBTAP00000031225/1-977 RWARSHEDRS ERDDWQRRST EIVAIDALHF RRYLDQFVPE KIRRELNKAY 851 900 ENSTTRP00000002531/1-901 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXLIQILA AAVAERDVVY bmy_04281T0/1-587 CLFLKL---- ---------- ---------- ---------- ---------- BACU006348/1-283 CLFLKL---- ---------- ---------- ---------- ---------- ENSP00000384408/1-491 CGFLRPGVSS ENLSAVATGN WGCGAFGGDA RLKALIQILA AAAAERDVVY ENSBTAP00000031225/1-977 CGFLRPGVSS ENLSAVATGN WGCGAFGGDA RLKALIQILA AAVAERDVVY 901 950 ENSTTRP00000002531/1-901 FTFGDSELMR DIYSMHTFLT ERKLTVGEVY KLLLRYYNEE CRNCSTPGPD bmy_04281T0/1-587 ---------- ---------- ---------- ---------- ---------- BACU006348/1-283 ---------- ---------- ---------- ---------- ---------- ENSP00000384408/1-491 FTFGDSELMR DIYSMHIFLT ERKLTVGDVY KLLLRYYNEE CRNCSTPGPD ENSBTAP00000031225/1-977 FTFGDSELMR DIYSMHTFLT ERKLTVGEVY KLLLRYYNEE CRNCSTPGPD 951 1000 ENSTTRP00000002531/1-901 IKLYPFIYQA VESCAETTNQ PGQRTGA bmy_04281T0/1-587 ---------- ---------- ------- BACU006348/1-283 ---------- ---------- ------- ENSP00000384408/1-491 IKLYPFIYHA VESCAETADH SGQRTGT ENSBTAP00000031225/1-977 IKLYPFIYHA VESCTQTTNQ PGQRTGA