KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:22 2014 Check: 00 .. Name: ENSTTRP00000008023/1-1119 Len: 1145 Check: 5466 Weight: 1.00 Name: ENSP00000298892/1-1077 Len: 1145 Check: 8883 Weight: 1.00 Name: ENSBTAP00000031373/1-1086 Len: 1145 Check: 5320 Weight: 1.00 Name: bmy_19664T0/1-686 Len: 1145 Check: 9289 Weight: 1.00 Name: BACU006099/1-1069 Len: 1145 Check: 3270 Weight: 1.00 // 1 50 ENSTTRP00000008023/1-1119 ---------M EVVFKASLGF EL--TSVEEN LRAWSR---- --LLRE---- ENSP00000298892/1-1077 --------ME VQVSQASLGF EL--TSVEKS LREWSR---- --LSREVIAW ENSBTAP00000031373/1-1086 ---------- ---------- ---------- ---------- ---------- bmy_19664T0/1-686 ERLSRRGVRR RRRRQRGLGR EREETGGGDA SAGWRRSTSA ALLAPAGFRR BACU006099/1-1069 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000008023/1-1119 FKASSRNFIL CFFLPLSDSS VSMVQLSSSP FGYQSPSGHS EEGKEGNMKS ENSP00000298892/1-1077 LCPSSPNFIL NFPPPPSASS VSMVQLFSSP FGYQSPSGHS EEEREGNMKS ENSBTAP00000031373/1-1086 -----PNFFF -FPFPLSASS VSMVQLSSSP FGYQSPSGHS EEGKQRTMKS bmy_19664T0/1-686 RARAAAAAAA AASAACGASS VSMVQLSSSP FGYQSPSGHS EEGKEGTMKS BACU006099/1-1069 ---------- ---------- --MVQLSSSP FGYQSPSGHS EEGKEGNMKS 101 150 ENSTTRP00000008023/1-1119 AKPQVNHSQH GESQRAMSPL QPALGSAASP SQAYETYIDN GLICLKHKIR ENSP00000298892/1-1077 AKPQVNHSQH GESQRALSPL QSTLSSAASP SQAYETYIEN GLICLKHKIR ENSBTAP00000031373/1-1086 AKPQVNHSQH GESQRAMSPL QSALSSAASP SQAYETYIDN GLICLKHKIR bmy_19664T0/1-686 ARPQVNHSQH GESQRAMSPL QPALSSAASP SQAYETYIDN GLICLKHKIR BACU006099/1-1069 ARPQVNHSQH GESQRAMSPL QPALSSAASP SQAYETYIDN GLICLKHKIR 151 200 ENSTTRP00000008023/1-1119 NIEKKKLKLE DYKDRLKNGE QLNPDQLEAV EKYEEVLHNL EFAKELQKTF ENSP00000298892/1-1077 NIEKKKLKLE DYKDRLKSGE HLNPDQLEAV EKYEEVLHNL EFAKELQKTF ENSBTAP00000031373/1-1086 NIEKKKLKLE DYKDRLKNGE HLNPDQLEAV EKYEEVLHNL EFAKELQKTF bmy_19664T0/1-686 NIEKKKLKLE DYKDRLKNGE QLNPDQLEAV EKYEEVLHNL EFAKELQKTF BACU006099/1-1069 NIEKKKLKLE DYKDRLKNGE QLNPDQLEAV EKYEEVLHNL EFAKELQKTF 201 250 ENSTTRP00000008023/1-1119 SGLSQDLLKA QKKAQRREHM LKLEAEKKKL RTILQVQYVL QNLMQEHVQK ENSP00000298892/1-1077 SGLSLDLLKA QKKAQRREHM LKLEAEKKKL RTILQVQYVL QNLTQEHVQK ENSBTAP00000031373/1-1086 SGLSQDLLKA QKKAQRREHM LKLEAEKKKL RTILQVQYVL QNLMQEHVQK bmy_19664T0/1-686 SGLSQDLLKA QKKAQRREHM LKLEAEKKKL RTILQVH--- ---------- BACU006099/1-1069 SGLSQDLLKA QKKAQRREHM LKLEAEKKKL RTILQVQYVL QNLMQEHVQK 251 300 ENSTTRP00000008023/1-1119 DFKGGLNGAV YLPLKELDYL IKFSKLTCPE RNESLSVEDQ MEQSSLYFWD ENSP00000298892/1-1077 DFKGGLNGAV YLPSKELDYL IKFSKLTCPE RNESLSVEDQ MEQSSLYFWD ENSBTAP00000031373/1-1086 DFKGGLNGAV YLPLKELDYL IKFSKLTCPE RNESLSVEDQ MEQSSLYFWD bmy_19664T0/1-686 ---------- ---------- ---------- ------VEDQ MEQSSLYFWD BACU006099/1-1069 DFKGGLNGAV YLPLKELDYL IKFSKLTCPE RNESLSVEDQ MEQSSLYFWD 301 350 ENSTTRP00000008023/1-1119 LLEGSEKAVV GTTC---QDL LSKLLNSGYF ESIPVPKNAK EKEVSLEEEM ENSP00000298892/1-1077 LLEGSEKAVV GTTYKHLKDL LSKLLNSGYF ESIPVPKNAK EKEVPLEEEM ENSBTAP00000031373/1-1086 LLEGSEKAVV GTTYKHMKDL LSKLLNSGYF ESIPVPKHAK EKEVSLEEEM bmy_19664T0/1-686 LLEGSEKAVV GTTYKHMKDL LSKLLNSGYF ESIPVPKNAK EKEVSLEEEM BACU006099/1-1069 LLEGSEKAVV GTTYKHMKDL LSKLLNSGYF ESIPVPKNAK EKEVSLEEEM 351 400 ENSTTRP00000008023/1-1119 LIKSEKKKQL SKTESVKESE SLMELAQPEI QP--QEFLNR RYMTEVDYSS ENSP00000298892/1-1077 LIQSEKKTQL SKTESVKESE SLMEFAQPEI QP--QEFLNR RYMTEVDYSN ENSBTAP00000031373/1-1086 LIKSEKKKQL LKTESVKESE SLMELAQPEI QP--QEFLNR RYMTEVDYSS bmy_19664T0/1-686 LIKSEKKKQL SKTESVKESG SF------HL KPLFKNFLNR RYMTEVDYSS BACU006099/1-1069 LIKSEKKKQL SKTESVKESE SLVELAQPEI QP--QEFLNR RYMTEVDYSS 401 450 ENSTTRP00000008023/1-1119 KQDEEQSWEA DYARKPNLPK CWDVLTEPDG QEKKQESFKS WESSVKHQEV ENSP00000298892/1-1077 KQGEEQPWEA DYARKPNLPK RWDMLTEPDG QEKKQESFKS WEASGKHQEV ENSBTAP00000031373/1-1086 KQDEEQSWEA DYARKPNLPK CWDMLTEPDG QEKKQETFKS WESSVKHQEV bmy_19664T0/1-686 KQDEEQSWEA DYARKPNLPK CWDVLTEPDG QEKKQESFKS WESSVKHQEV BACU006099/1-1069 KQDEEQSWEG DYARKPNLPK CWDVLTEPDG QEKKQESFKS WESSVKHQEV 451 500 ENSTTRP00000008023/1-1119 SKPAVSLEQR KQEIPKLRST LQEEQKKQDV SKTKATPSQW KQEALKSKVG ENSP00000298892/1-1077 SKPAVSLEQR KQDTSKLRST LPEEQKKQEI SKSKPSPSQW KQDTPKSKAG ENSBTAP00000031373/1-1086 SKPVVSLEQR KQEIPKLRST LQEEQKKQDV SKTKPTPGQW KQEASKSKPG bmy_19664T0/1-686 SKPAVSLEQR KQEIPKLRST LQEEQKKQDV SKTKSAPSQW KPEALKSKVG BACU006099/1-1069 SKPAVSLEQR KQEIPKLRST LQEEQKKQDV SKTKSAPSQW KPEALKSKVG 501 550 ENSTTRP00000008023/1-1119 YIQEEQKKQE TPKPWPVHXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000298892/1-1077 YVQEEQKKQE TPKLWPVQLQ KEQDPKKQTP KSWTPSMQSE QNTTKS-WTT ENSBTAP00000031373/1-1086 YIQEEQKKQE TLKPWPVQPQ KEQEPKKQTS KSWTPSVQSD QDITKS-WTS bmy_19664T0/1-686 YIQEEQKKQE TPKPWPVQLQ KEQDPKKQTP KPWTPSVQSE QDITKS-WAT BACU006099/1-1069 YIQEEQKKQE TPKPWPVQLQ KEQDPKKQTP KSWTPSVQSE QDITKS-WAT 551 600 ENSTTRP00000008023/1-1119 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000298892/1-1077 PMCEEQDSKQ PETPKSWENN VESQKHSLTS QSQISPKSWG VATASLIPND ENSBTAP00000031373/1-1086 PTCEEQDSRH PETPKSWENN VESQKHPLTP QSQISPKSWG VAAASLIPND bmy_19664T0/1-686 PMCEEQDSRQ PETPKSWENN VESQKHPLTS QSQISPKSWG VATASLIPND BACU006099/1-1069 PMCEEQDSRQ PETPKSWENN VESQKHPLTP QSQISPKSWG VATASLIPND 601 650 ENSTTRP00000008023/1-1119 XXXXXXXXXX XXXVPKPMHQ HMGSSSTLPK DPVRKEMXXX XXXXXXXXXX ENSP00000298892/1-1077 QLLPRKLNTE PKDVPKPVHQ PVGSSSTLPK DPVLRKEKLQ DLMTQIQGTC ENSBTAP00000031373/1-1086 QLLPRKFNTE SKDVPKPMHQ PVGSSSTLPK DPVLRKEKLQ DLMTQIQGTC bmy_19664T0/1-686 QLLPRKFNTE PKDVPKPMHQ PVGSSSTLPK DPVLRKEKLQ DLMTQIQGTC BACU006099/1-1069 QLLPRKFNTE PKDVPKPMHQ PVGSSSTLPK DPVLRKEKLQ DLMTQIQGTC 651 700 ENSTTRP00000008023/1-1119 XXXXESILDF DKPPSAIPSS QPPSATPGSP VXXXXXXXXX XXXXXXXXXX ENSP00000298892/1-1077 NFMQESVLDF DKPSSAIPTS QPPSATPGSP VASKEQNLSS QSDFLQEPLQ ENSBTAP00000031373/1-1086 NFMQESILDF DKPSSAIPSS QPPSATPGSP VASTEQNLSN QSDFLQEPLQ bmy_19664T0/1-686 NFMQESILDF DKPPSAIPSS QPPSATPGSP VASTEQNLSN QSDFLQEPLQ BACU006099/1-1069 NFMQESILDF DKPPSAIPSS QPPSATPGSP VASTEQNLSN QSDFLQEPLQ 701 750 ENSTTRP00000008023/1-1119 AASSPVTCSS NACLVTTDQA SSGSETEFMT SETPEAAVPP SKKPSSLASP ENSP00000298892/1-1077 ATSSPVTCSS NACLVTTDQA SSGSETEFMT SETPEV---- ---------- ENSBTAP00000031373/1-1086 AASSPVTCSS NACLVTTDQA SSGSETEFMT SETPEAAVSP SKQPSSLASP bmy_19664T0/1-686 AASSPVTCSS NACLVTTDQA SSGSETEFMT SETPEV---- ---------- BACU006099/1-1069 AASSPVTCSS NACLVTTDQA SSGSEAEFMT SETPEAAVPP SKKPSSLASP 751 800 ENSTTRP00000008023/1-1119 NPPMSKGSEQ GFQSPPASSS SVTINTAPFQ AMQTVFNVNA PLPPRKEQEI ENSP00000298892/1-1077 ---------- ---------- ---------- -----FNVNA PLPPRKEQEI ENSBTAP00000031373/1-1086 NPPMSKGSEQ GFQSPPASSS SVTINTAPFQ AMQTVFNVNA PLPPRKEQEI bmy_19664T0/1-686 ---------- ---------- ---------- ---------- ---------- BACU006099/1-1069 NPPMSKGSEQ GFQSPPASSS SVTINTAPFQ AMQTVFNVNA PLPPRKEQEI 801 850 ENSTTRP00000008023/1-1119 KESPYSPGYN QSFTTASTQT PPQCQLPAIH VEQTVLSQET AASYPDGTIQ ENSP00000298892/1-1077 KESPYSPGYN QSFTTASTQT PPQCQLPSIH VEQTVHSQET ANYHPDGTIQ ENSBTAP00000031373/1-1086 KESPYSPGYN QSFTTASTQT PPQCQLPAIH VEQTVLSQDT AASFPDGTIQ bmy_19664T0/1-686 ---------- ---------- ---------- ---------- ---------- BACU006099/1-1069 KESPYSPGYN QSFTTASTQT PPQCQLPAIH VEQTVLSQET ASY-PDGTIQ 851 900 ENSTTRP00000008023/1-1119 VSNGSLAFYP AQTNVFPRPS QPFVNSRGSV RGCTRGGRLL TNSYRSPGGY ENSP00000298892/1-1077 VSNGSLAFYP AQTNVFPRPT QPFVNSRGSV RGCTRGGRLI TNSYRSPGGY ENSBTAP00000031373/1-1086 VSNGSLAFYP AQTNVFPRPS QPFVNSRGSV RGCTRGGRLL TNSYRSPGGY bmy_19664T0/1-686 ---------- ---------- ---------- ---------- ---------- BACU006099/1-1069 VSNGSLAFYP AQTNVFPRPS QPFVNSRGSV RGCTRGGRLL TNSYRSPGGY 901 950 ENSTTRP00000008023/1-1119 KGFDTYRGPP SISNGNYSQL QFQAREYPGT PYSQRDNFQQ CYKRGGTSGG ENSP00000298892/1-1077 KGFDTYRGLP SISNGNYSQL QFQAREYSGA PYSQRDNFQQ CYKRGGTSGG ENSBTAP00000031373/1-1086 KGFDNYRGPP SISNGNYSQL QFQAREYPGT PYSQRDNFQQ CYKRGGTSAG bmy_19664T0/1-686 ---------- ---------- ---------- ---IRDQLS- ---------- BACU006099/1-1069 KGFDTYRGPP SISNGNYSQL QFQAREYPGT PYSQRDNFQQ CYKRGGTSGG 951 1000 ENSTTRP00000008023/1-1119 PRANSRAGWS DSSQVSSPER DNETFNSGDS GQGDSRSMTP VDVPVTNPAA ENSP00000298892/1-1077 PRANSRAGWS DSSQVSSPER DNETFNSGDS GQGDSRSMTP VDVPVTNPAA ENSBTAP00000031373/1-1086 PRANSRAGWS DSSQVSSPER DNETFNSGDS GQGDSRSMTP VDVPVTNPAA bmy_19664T0/1-686 ---------- ---------- ---------- ---------- ---------- BACU006099/1-1069 PRANSRAGWS DSSQVSSPER DNETFNSGDS GQGDSRSMTP VDVPVTNPAA 1001 1050 ENSTTRP00000008023/1-1119 TILPVHVYPL PQQMRVAFSA ARTSNLAPGT LDQPIVFDLL LNNLGETFDL ENSP00000298892/1-1077 TILPVHVYPL PQQMRVAFSA ARTSNLAPGT LDQPIVFDLL LNNLGETFDL ENSBTAP00000031373/1-1086 TILPVHVYPL PQQMRVAFSA ARTSNLAPGT LDQPIVFDLL LNNLGETFDL bmy_19664T0/1-686 ---------- ---------- ---------- ---------- ---------- BACU006099/1-1069 TILPVHVYPL PQQMRVAFSA ARTSNLAPGT LDQPIVFDLL LNNLGETFDL 1051 1100 ENSTTRP00000008023/1-1119 QLGRFNCPVN GTYVFIFHML KLAVNVPLYV NLMKNEEVLV SAYANDGAPD ENSP00000298892/1-1077 QLGRFNCPVN GTYVFIFHML KLAVNVPLYV NLMKNEEVLV SAYANDGAPD ENSBTAP00000031373/1-1086 QLGRFNCPVN GTYVFIFHML KLAVNVPLYV NLMKNEEVLV SAYANDGAPD bmy_19664T0/1-686 ---------- ---------- ---------- ---------- ---------- BACU006099/1-1069 QLGRFNCPVN GTYVFIFHML KLAVNVPLYV NLMKNEEVLV SAYANDGAPD 1101 1150 ENSTTRP00000008023/1-1119 HETASNHAIL QLFQGDQIWL RLHRGAIYGS SWKYSTFSGY LLYQD ENSP00000298892/1-1077 HETASNHAIL QLFQGDQIWL RLHRGAIYGS SWKYSTFSGY LLYQD ENSBTAP00000031373/1-1086 HETASNHAIL QLFQGDQIWL RLHRGAIYGS SWKYSTFSGY LLYQD bmy_19664T0/1-686 ---------- ---------- ---------- ---------- ----- BACU006099/1-1069 HETASNHAIL QLFQGDQIWL RLHRGAIYGS SWKYSTFSGY LLYQD