KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:23 2014 Check: 00 .. Name: ENSP00000369871/1-955 Len: 1153 Check: 4065 Weight: 1.00 Name: ENSBTAP00000031434/1-948 Len: 1153 Check: 5689 Weight: 1.00 Name: bmy_18518T0/1-633 Len: 1153 Check: 1837 Weight: 1.00 Name: BACU006600/1-1029 Len: 1153 Check: 7596 Weight: 1.00 Name: ENSTTRP00000001675/1-951 Len: 1153 Check: 371 Weight: 1.00 // 1 50 ENSP00000369871/1-955 MSSASVTAFE KEHLWMYLQA LGFEPGPATI ACGKIVSHTH LGVNMFDKLN ENSBTAP00000031434/1-948 MSSAWVTSFE KARLWMYLQA LGFEPCLATI ACGNTVSHTQ FGVNMFDKLN bmy_18518T0/1-633 MSSAWVTTFE KEHLWMYLQV LGFELGLATV ACGKMVSHTH LRVNMFDKLN BACU006600/1-1029 MSSAWVPSFE KEHLWMYLQA LGFEPGSATV AGGKIVSHTH LGVNMFDKLN ENSTTRP00000001675/1-951 MSSAWVPSFE KEHLWMYLQA LGFEPGSATV AGGKIVSHTH LGVNMFDKLN 51 100 ENSP00000369871/1-955 RDAFHIISYF LFQVLDQSLT KEVFKFCWPP FDQKSDTEFR KHCCEWIKRI ENSBTAP00000031434/1-948 RDAFHIVSYF LFQTLDKSLT KEVFKHCWPP FDQKRDVEFR KLFCEWLKKI bmy_18518T0/1-633 REAFQIVSYF LFQTLDQSLS KEVFKLCWPP FDQKSDTEFR KHCCEWLKKI BACU006600/1-1029 RDAFQIVSYF LFQTLDQSLT KEVFK----- ---------- ---------- ENSTTRP00000001675/1-951 RDAFQIVSYF LFQTLDQSLT KEVFKLCWPP FDQKSDTEFR KHCCEWLKKI 101 150 ENSP00000369871/1-955 SGECGSSFPQ VVGSLFLSPG GPKFIHLMYH FARFVAMKYI KSNSKNSSHH ENSBTAP00000031434/1-948 SAECGSSFPQ VVGSLFLFPV GPKFIHIMYH FARFVAVKYI KTHSKNSSIR bmy_18518T0/1-633 SAECGSSFPQ VVGSLFLSPG GPKFIHVMYH FARFVAIKYI KTHSKNSS-- BACU006600/1-1029 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001675/1-951 SAECGSSFPQ VVGSLFLSPG GPKFIHLMYH FARFVAINYI KTHSKNSSVH 151 200 ENSP00000369871/1-955 FVETFNIKPQ DLHKCIARCH FARSRFLQIL QRQDCVTQKY QENAQLSVKQ ENSBTAP00000031434/1-948 FTETFNVKPQ DLHICLARCL VARNRFLQVL QREDCVTRKY QENAQLSVKQ bmy_18518T0/1-633 ---------- ---------- ---------- ---------- -ENAQLSVKQ BACU006600/1-1029 ---------- ---------- ---------- ---------- -----LSVKQ ENSTTRP00000001675/1-951 FTETFNIKPQ DLHKCIARCH VARNRFLQIL QREDYVTRKY QENAQLSVKQ 201 250 ENSP00000369871/1-955 VRNLRSECIG LENQIKKMEP YDDHSNMEEK IQKVRSLWAS VNETLMFLEK ENSBTAP00000031434/1-948 VRNLRSECMG LENQIKKMEP CDDQSNIQEK IQKVRSLWTN VNETLMFLEK bmy_18518T0/1-633 ARNLRSECIG QQNQIKKMEP YDDQSNIQEN IQKVRSLWAS VNETFMFLEK BACU006600/1-1029 IQNLRSECIG QQNQIKKMEP YDDQSNIQEK IQKVRSLWAS VNETLMVLEK ENSTTRP00000001675/1-951 IQNLRSECIG QQNEIKKMEP YDDQSNIQEK IQKVRSLWAS VNETLMVLEK 251 300 ENSP00000369871/1-955 EREVVSSVLS LVNQYALDGT NVAINIPRLL LDKIEKQMFQ LHIGNVYEAG ENSBTAP00000031434/1-948 EREVVSSVLS LDNNYTLDGT DIAINIPSLL LDKIEKQMCQ LHTGNIYEAG bmy_18518T0/1-633 EGEVVSSVLS LVNQYTLDGT NVAINIPRLL PDKIEKQMCQ LHIGNVYEAG BACU006600/1-1029 EREVVSSVLS VVNQYTLDGT NVAINIPRLL LDKIEKQMCQ LHIGNVYEAG ENSTTRP00000001675/1-951 EREVVSSVLS VVNQYTLDGT NVAINIPRLL LDKIEKQMCQ LHIGNVYEAG 301 350 ENSP00000369871/1-955 KLNLLTVIQL LNEVLKVMKY ERCQADQARL TVDLHYLEKE TKFQKERLSD ENSBTAP00000031434/1-948 KLNILTVFWL LNEVLKVMKC ECCQTDQARL TIDLHFLEKE TRFQKERLSD bmy_18518T0/1-633 KLNLLTVIQL LNEVLKVMKY EHCQADQARL TKDLHFLEKE TKFQRERLSD BACU006600/1-1029 KLNLLTVIQL LNEVLKVMKY EHCQANQARL TIDLHFLEKE TKVQRERLSD ENSTTRP00000001675/1-951 KLNLLTVIQL LNEVLKVMKY EHCQANQARL TIDLHFLEKE TKVQRERLSD 351 400 ENSP00000369871/1-955 LKHMRYRIKD DLTTIRHSVV EKQGEWHKKW KEFLGLSPFS LIKG------ ENSBTAP00000031434/1-948 LKHMRYKITE ALKTIRHSIV EKQEEWHKKW KEFLGLSPFS IIKG------ bmy_18518T0/1-633 LKHMRYKIKE DLTTVRHSIV EKQEEWHKIW KEFLGLSPFS LIKG------ BACU006600/1-1029 LKHMRYKIKE DLTTIRHSIV EKQEEWHKNW EEFLGLSPFS LIKGEASPME ENSTTRP00000001675/1-951 LKHMRYKIKE DVSTIKHSIV EKQEEWHKNW KEFLGLSPFS LIKG------ 401 450 ENSP00000369871/1-955 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031434/1-948 ---------- ---------- ---------- ---------- ---------- bmy_18518T0/1-633 ---------- ---------- ---------- ---------- ---------- BACU006600/1-1029 KENLKSHVAP GLQGKLPGRP PSHLISQGAL PNGSLRKTLK KAKSDDSVGE ENSTTRP00000001675/1-951 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000369871/1-955 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031434/1-948 ---------- ---------- ---------- ---------- ---------- bmy_18518T0/1-633 ---------- ---------- ---------- ---------- ---------- BACU006600/1-1029 EEKDQEEKRR RVTSREQVAG PLPAKEPGRV RPGTHVEEEE RVDKVKRGHL ENSTTRP00000001675/1-951 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000369871/1-955 ---------- --WTP----- ---------- ---------- ---------- ENSBTAP00000031434/1-948 ---------- --STP----- ---------- ---------- ---------- bmy_18518T0/1-633 ---------- --WTP----- ---------- ---------- ---------- BACU006600/1-1029 QEEKRLRSQT EGLTPKQKSK EEPDRDVRPG GAQAEMNEGE DKNEKRHRNE ENSTTRP00000001675/1-951 ---------- --WTP----- ---------- ---------- ---------- 551 600 ENSP00000369871/1-955 ---------- ---------- ---------- -SVDLLPPMS PLSFDPASEE ENSBTAP00000031434/1-948 ---------- ---------- ---------- -AVDLLPPMS PLSFDPASEE bmy_18518T0/1-633 ---------- ---------- ---------- -AVDLLPPIT ---------- BACU006600/1-1029 PKDLASKQRP EEKEPERVKP QVSDEKDEDE KAVDLLPPMS PLSFDPASEE ENSTTRP00000001675/1-951 ---------- ---------- ---------- -AVDLLPPMS PLSFDPASEE 601 650 ENSP00000369871/1-955 VYAKSILCQY PASLPDAHKQ HNQENGCRGD SDTLGALHDL ANSPASFLSQ ENSBTAP00000031434/1-948 AYARSILLQY PASLPVTPKQ HIQENNCRRA SDTLETKSDP PNSPASFPLQ bmy_18518T0/1-633 ------LLHF QIHLSNISRK MI----ARRA SDILETKCDL AKGPASFLWQ BACU006600/1-1029 AYAKSILLQY PASLPDTRKQ DIQENDCRRA SDILETKCDL ANSPASFLLQ ENSTTRP00000001675/1-951 AYEKSILLQY PASLPDTRKQ HTQEDDCRKG SDIWETKCDL ANSPASFLLQ 651 700 ENSP00000369871/1-955 SVSSSDRNSV TVLEKDTKMG TPKEKNEAIS KKIPEFEVEN SPLSDVAKNT ENSBTAP00000031434/1-948 PVPPLGGDIV TLLEKDTKLV TLREKNETVP KKTPEFNVEN SSSSNIVKNT bmy_18518T0/1-633 LISPSDRNSV TLLENDRKLT SPREKNETVS KKTPEF--EG SSSSNIA--- BACU006600/1-1029 PISPSDRNSV TLLEKDTKLT TPREKNETVS KKTPEFEAED SSSSNIA--- ENSTTRP00000001675/1-951 PISPSDRNSV TLLEKDTKLM TPREKNETVS KKTSEFEAED SSSSNIA--- 701 750 ENSP00000369871/1-955 ESSAFGGSLP AKKSDPFQKE QDHLVEEVAR AVLSDSPQLS EGKEIKLEEL ENSBTAP00000031434/1-948 DSSACGGSLP AKKSNPFQKE QDHLVEEVAR AVLSNSPQLS EEKEVKLEEL bmy_18518T0/1-633 ---------- --------KN QDHLVEEVAR AVLSDSPQPS KGKEVMLEEL BACU006600/1-1029 ESSAFGGSLP AKKSDPFQKE QDHLVEEVAR AVLSDSPQPS KGEEVILEGL ENSTTRP00000001675/1-951 KSSAFGGSLP AKKSDPFQKE QDHLV--VAR AVLSDSPQPS KGKEVILEEL 751 800 ENSP00000369871/1-955 IDSLGSNPFL TRNQIPRTPE NLITEIRSSW RKAIEMEENR TKEPIQMDAE ENSBTAP00000031434/1-948 IDSLISNPFL TRSQIPRTPE NLISEIRSSW RKAVDTEDNR STEPIQVDTE bmy_18518T0/1-633 IDSLVSNP-- ---------- -LISDIRSSW RKAVKIEDNR STEPIQMVTE BACU006600/1-1029 IDSLVSDPFL TRNQIPRTPE NLISEIRSSW RKAVKIEDNR STEPIQMDTE ENSTTRP00000001675/1-951 IDSLASNPFL TRNQIPRTPE NLISEIRSSW RKAVKIEDNR SAEPIQMDTE 801 850 ENSP00000369871/1-955 HREVLPESLP VLHNQREFSM ADFLLETTVS DFGQSHLTEE KVISDCE-CV ENSBTAP00000031434/1-948 RREELPESLP VVHNQKEFSM ASFLSAATVS NSSHSHLPEE KVVSDCLECV bmy_18518T0/1-633 HREVLPESSP VVHNQKEFNM ASFFSTTTVS DSSHSRLPEE KVVSDCLKCV BACU006600/1-1029 HREVLPESLP VVHNQKELNV DSFFSATTVS DSSHSHLPEE KVVSDCLKCV ENSTTRP00000001675/1-951 HREVLPESLP VVHNQKELNV DSFFSATTVS DSSHSHLPEE KVVSDCLKCV 851 900 ENSP00000369871/1-955 PQKHVLTSHI DEPPTQNQSD LLNKKVICKQ DLECLAF-TK LSETSRMETF ENSBTAP00000031434/1-948 PQKPVVTTCI GEPTTQNPSD LLNKDIICMQ DLDCTTLQNK LLETSQIETF bmy_18518T0/1-633 IQKPVVASYV GEPTTQHLSD LLNKDIICKR DLECTALQNK LLETSHIETL BACU006600/1-1029 LQKPVVTSCI GEPTTQNLSD LLNKDIICKQ DLECTALQNK FLETSQIETF ENSTTRP00000001675/1-951 LQKPVVTSCI GEPTTQNVSD LLNKDIICKQ DLECTALQNK FLETSQIETS 901 950 ENSP00000369871/1-955 SPAVGNRIDV MGGSEEEFMK ILDHLEVSCN KPSTNKTMLW NSFQISSGIS ENSBTAP00000031434/1-948 SPAVGNRRNV LGSSEEDNIK ISDQSKASYK DFSMYNSMLW NCFQVSNG-- bmy_18518T0/1-633 SPAIGNRRDV IGSSEE---- ---------- ---------- ---------- BACU006600/1-1029 SPAVGNRRDV IGRSEEEYIK ISDHSRASYK DLSMHKSMLW NSFQISSGIS ENSTTRP00000001675/1-951 SPAVGNRRDV IGSSEEEYIK ISDHSKASYK DLSMHKSMLW NSFQISSGIS 951 1000 ENSP00000369871/1-955 SKSFKDNDFG ILHETLPEEV GHLSFNSSSS SEANFKLEPN SPMHGGTLLE ENSBTAP00000031434/1-948 -------DFG ILHETLP-EV GHISLISPSS TEATFNLEPN SPMHSGIFTE bmy_18518T0/1-633 ---------- ---------- ---------- ---------- ---------- BACU006600/1-1029 S-SFKDSDFG ILHETLPEEV GHLSLNSSSS TEANFKLEPN SPMHSGIFPE ENSTTRP00000001675/1-951 S-SFKDSDFG ILHETLPEEV GHLSLNSSGS TEANFKLEPN SPMHSGIFPE 1001 1050 ENSP00000369871/1-955 DVVGGRQTTP ESDFNLQALR SRYEALKKSL SKKREESYLS NSQTPERHKP ENSBTAP00000031434/1-948 DVVGEKQTTP ESDFNLQATC SGYEALKKSP SKQREEIYLS NPEILERHKP bmy_18518T0/1-633 ---------- ---------- ---------- ---------- ---------- BACU006600/1-1029 GAVGGRQNTP ESDFNLQATC SGYEALKKSL SKQREEICLS NPETLERHKP ENSTTRP00000001675/1-951 GAVGGRQNTP ESDFNLQATW SGYEALKKSV PKQREEICLS NPETLERHKP 1051 1100 ENSP00000369871/1-955 ELSPTPQNVQ TDDTLNFLDT CDLHTEHIKP SLRTSIGERK RSLSPLIKFS ENSBTAP00000031434/1-948 ELSLTPQKMQ TDDMLNFLGI HDLHIDYTKP SSRMSLGERK RSLSPLIKFS bmy_18518T0/1-633 ---------- ---------- ---------- ---------- ---------- BACU006600/1-1029 ELSLTSQYMQ TDDMLNFLGT HDLHIDYTKP SSRMSLGERK RSLSPLIKFS ENSTTRP00000001675/1-951 ELSLTSQYMQ ADDMLNFWGT HDMHIDCTKP SSRMSLGERK RSLSPLIKFS 1101 1150 ENSP00000369871/1-955 PVEQRLRTTI ACSLGE-LPN LK----EEDI LNKSLDAKEP PSDLTR---- ENSBTAP00000031434/1-948 PVEQRLKTTI PCSLGELLSN LT----EEEI LNKSLDAEVS PSDSTR---- bmy_18518T0/1-633 ---------- ---------- ---------- ---------- ---------- BACU006600/1-1029 PVEQRLRTTI PCSLGELLPN LTVNFAEEEI LNKSLDAKES PSDLKDEAVA ENSTTRP00000001675/1-951 PVEQRLRTTV PCSLGERLPN LT----EEEI LNKSLDAKES PSDLR----- 1151 1200 ENSP00000369871/1-955 --- ENSBTAP00000031434/1-948 --- bmy_18518T0/1-633 --- BACU006600/1-1029 QST ENSTTRP00000001675/1-951 ---