KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:41:27 2014 Check: 00 .. Name: ENSP00000311336/1-1300 Len: 1650 Check: 4346 Weight: 1.00 Name: ENSBTAP00000031534/1-1284 Len: 1650 Check: 7751 Weight: 1.00 Name: bmy_15771T0/1-1311 Len: 1650 Check: 2839 Weight: 1.00 Name: BACU006482/1-1393 Len: 1650 Check: 6956 Weight: 1.00 // 1 50 ENSP00000311336/1-1300 MGTGPAQTPR STRAGPEPSP APPGPGDTGD SDVTQEGSGP AGIRGGETVI ENSBTAP00000031534/1-1284 ---------- ---------- ---------- ---------- ---------- bmy_15771T0/1-1311 ---------- ---------- ---------- ---------- ---------- BACU006482/1-1393 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000311336/1-1300 RAGMGDSPGR GAPERR--HK AQPGRARKYE WRPEGPTSMG SLGQREDLQD ENSBTAP00000031534/1-1284 ---MGDPAGR REAQRRRQNK NKPGPSEKYE LRADGPTSMG SLAYREDL-D bmy_15771T0/1-1311 ---------- ---------- ---------- --------MG SLAYREDL-- BACU006482/1-1393 ---------- ---------- ---------- --------MG SLAYREDP-E 101 150 ENSP00000311336/1-1300 EDRNSAFTWK VQANNRAYNG QFKEKVILCW QRKKYKTNVI RTAKYNFYSF ENSBTAP00000031534/1-1284 EEKNSEFTWE VQANNRAYNS QFKEKVFLCW QRRKYKKNII HTAKYNVFSF bmy_15771T0/1-1311 EEKNSEFTWE VQANNRSYNN QFKEKVFLCW QRKKYKRNVI HTAKYNVFSF BACU006482/1-1393 EEKNSEFTWE VQANNRSYNN QFKEKVFLCW QRKKYKRNVI HTAKYNVFSF 151 200 ENSP00000311336/1-1300 LPLNLYEQFH RVSNLFFLII IILQSIPDIS TLPWFSLSTP MVCLLFIRAT ENSBTAP00000031534/1-1284 LPLNLYEQFH RFSNLYFLLI ILLQGIPEIS TLPWFTLFAP LVCLLTIRAI bmy_15771T0/1-1311 LPLNLYEQFH RMSNLYFLLI IILQGIPEIS TLPWFTLFAP LVGLLTIRAT BACU006482/1-1393 LPLNLYEQFH RMSNLYFLLI IILQGIPEIS TLPWFTLFAP LVGLLTIRAT 201 250 ENSP00000311336/1-1300 RDLVDDMGRH KSDRAINNRP CQILMGKSFK QKKW------ -QDLCVGDVV ENSBTAP00000031534/1-1284 RDLVDDIGRH RSDKIVNNRP CQILMGKRRS EGPWNLGGGG NQDRXVGDLV bmy_15771T0/1-1311 RDLVDDIGRH RSDRNINNRP CQILMGKSFL ---------- ---------- BACU006482/1-1393 RDLVDDI--- ---------- ---------- ---------- ---------- 251 300 ENSP00000311336/1-1300 CLRKDNIVPA DMLLLASTEP SSLCYVETVD IDGETNLKFR QALMVTHKEL ENSBTAP00000031534/1-1284 CLHKDSIVPA DLVLLASTEP SSLCYVETAD IDGETNLKFR QAPMITHHEL bmy_15771T0/1-1311 ---------- ---------- ---------- ---------- ---------- BACU006482/1-1393 ---------A DLVLLASTEP SSLCYVETAD IDGETNLKFR QAPTITHHEL 301 350 ENSP00000311336/1-1300 ATIKKMASFQ GTVTCEAPNS RMHHFVGCLE WNDKKYSLDI GNLLLRGCRI ENSBTAP00000031534/1-1284 TSIRKIASFQ GKVVCEEPNS RMHHFVGCLE WKGKKYPLDS GNILLRGCKV bmy_15771T0/1-1311 ---------- ---------- ---------- WRKWK----- ---------- BACU006482/1-1393 TSIRKMASFQ GKVVCEEPNS RMHHFVGCLE WKGKKYPLDS GNILLRGCKI 351 400 ENSP00000311336/1-1300 RNTDTCYGLV IYA------- -GFDTKIMKN CGKIHLKRTK LDLLMNKLVV ENSBTAP00000031534/1-1284 RNTDTCYGLV VYADGMMGGG VGFDTKIMKN CGKIHLKRTK IDHLMNRLVV bmy_15771T0/1-1311 ---NLCVGDV VCL------- ---------- ---------- ---------- BACU006482/1-1393 RNTDTCYGLV IYA------- -GFDTKIMKN CGKIHLKRTK IDHLMNRLVV 401 450 ENSP00000311336/1-1300 VIFISVVLVC LVLAFGFGFS VKEFKDHHYY LSGVHGSSVA AESFFVFWSF ENSBTAP00000031534/1-1284 LIFVSMVVVS AVLTFGFWHK VKEFKANHHY VSAVHMRSVA MEAFFIFWGF bmy_15771T0/1-1311 ---------- ---------- ---------- ----HRDSIV PAD------- BACU006482/1-1393 LIFLSMVVIS AVLTLGFRYK VREFKAKHHY VSAQHVRSEA TQTFFIFWGF 451 500 ENSP00000311336/1-1300 LILLSVTIPM SMFIL-SEFI YLGNSVFIDW DVQMYYKPQD VPAKARSTSL ENSBTAP00000031534/1-1284 LILLSVLVPM AMFIIRAEFI YLGNSVFINW DEHMYYEPQD LPAKARSTSL bmy_15771T0/1-1311 LVLLASTEPS SLC------- ---------- ----YVETAD ID-------- BACU006482/1-1393 LVLLSVMVPV AMFIL-AEFI HLGNSIFINW DERMYYEPQD LPAKARSTSL 501 550 ENSP00000311336/1-1300 NDHLGQVEYI FSDKTGTLTQ NILTFNKCCI SGRVYGPDSE ATTRPKENPY ENSBTAP00000031534/1-1284 NDLLGQVEYI FSDKTGTLTQ NIMTFKKCCV NGVVYGPEVE AQRRPQENPF bmy_15771T0/1-1311 ----GQLSFL RSGQTQALHP ---------- ---------E KEGVEQEDPY BACU006482/1-1393 NDLLGQVEYI FSDKTGTLTQ NVMTFKKCCI NGVIYGSE-E EDTLLKEDPY 551 600 ENSP00000311336/1-1300 LWNKFADGKL LFHNAALLHL VRTNGDEAVR EFWRLLAICH TVMVRE---- ENSBTAP00000031534/1-1284 LWNEFADGKL LFCNAQLLQA VRANQDWRVR EFWRVLAVCH TVMVQT---- bmy_15771T0/1-1311 LWNKFADGKL RFRNAELLQA VRANQDRRVR EFWRVLAICH TVMLQEKNSS BACU006482/1-1393 LWNKFADGKL HFRNAELLQA VRANQDRRVR EFWRVLAICH TVMVQEKN-- 601 650 ENSP00000311336/1-1300 -SPRERP--- ----DQLLYQ AASPDEGALV TAARNFGYVF LSRTQDTVTI ENSBTAP00000031534/1-1284 -PPRPAPPWP ----DQLVYQ AASPDEEALV TAARNFGYVF LARTQDSITL bmy_15771T0/1-1311 QPPPPPPPHP APGPDQLLYQ AASPDEEALV TAARNFGYVF LARTQDSITV BACU006482/1-1393 ---------- ----NQLLYQ AASPDEEALV TAARNFGYVF LARTQNSITV 651 700 ENSP00000311336/1-1300 MELGEERVYQ VLAIMDFNST RKRMSVLVRK PEGAICLYTK GADTVIFERL ENSBTAP00000031534/1-1284 MELGEECVYQ VLAMMDFNSI RKRMSVLVRK PEGSIYLYTK GADTVIYERL bmy_15771T0/1-1311 MELGEERVYQ VLAMMDFNSV RKRMSVLVRN PEGSIYLYTK GADTVIYERL BACU006482/1-1393 MELGEERVYQ VLAMMDFNSV RKRMSVLVRN PEGSIYLYTK GADTVIYERL 701 750 ENSP00000311336/1-1300 HRRGAMEFAT EEALAAFAQE TLRTLCLAYR EVAEDIYEDW QQRHQEASLL ENSBTAP00000031534/1-1284 QKKGETEWAT EEALASFAKE TLRTLCLACK EVDEEVYEEW RQRHQEASIL bmy_15771T0/1-1311 QKKGLMECTT EEALASFAEQ TLRTLCVACK EVDEDTYEEW RQRHQEASIL BACU006482/1-1393 QKKGLMERTT EEALASFAEQ TLRTLCVACK EVDEDMYEEW RQRHQEASIL 751 800 ENSP00000311336/1-1300 LQNRAQALQ- ---------Q LLGATAIEDR LQDGVPETIK CLKKSNIKIW ENSBTAP00000031534/1-1284 LQNRAQALHQ VYEEMEQSLQ LLGATAIEDR LQDGVLETIK CLKQGNIKVW bmy_15771T0/1-1311 LQNRAHALHQ VYEEMEQNLQ LLGATAIEDR LQDGVLDTIK CLKQGNIKVW BACU006482/1-1393 LQNRAHALHQ VYEEMEQNLQ LLGATAIEDR LQDSVLDTIK CLKQGNIKVW 801 850 ENSP00000311336/1-1300 VLTGDKQETA VNIGFACELL SENMLILEEK EISRILETYW ENSNNL---- ENSBTAP00000031534/1-1284 VLTGDKQETA VNIGFACELL SENMIILEEK EIVRILEVYW ENNNNLQGGE bmy_15771T0/1-1311 VLTGDKQETA VNIGFACRLL SENMIILEEK EIVRILEVYW ESNNSLQGGK BACU006482/1-1393 VLTGDKQETA VNIGFACQLL SENMIILEEK EIVRILEVYW ESNNSLQGGK 851 900 ENSP00000311336/1-1300 ---LTRESLS QVKLALVING DFLDKLLVSL RKEPRALAQN VNMD--EAWQ ENSBTAP00000031534/1-1284 ----KKELPL QFKMALVING EFLDQLLLSL RKEPRAPVQN VNVDPLESWQ bmy_15771T0/1-1311 KGHLKKQLPL QVKMALVING EFLDQLLLSL RKEPRALVQN VSLDEEEPWQ BACU006482/1-1393 KGHLKKQLPL QVKMALVING EFLDQLLLSL RKEPRALVQN VSLDEEEPWQ 901 950 ENSP00000311336/1-1300 ELGQSRRDFL YARRLSLLCR RFGLPL---- AAPPAQDSRA RRSSEVLQER ENSBTAP00000031534/1-1284 EPGEERVDFL QARRLSLMWR TLGIQLRSSG LAPQHEDSKT LRSAEERRER bmy_15771T0/1-1311 EPREERADFL QARRLSLMWR VLGIQLRNTG LAPQDKGYKA LESAEVRRER BACU006482/1-1393 EPGEERADFL QARRLSLMWR VLGIQLWNTG LAPQDKGYKA LESTEVRRER 951 1000 ENSP00000311336/1-1300 AFVDLASKCQ AVICCRVTPK QKALIVALVK KYHQVVTLAI GDGANDINMI ENSBTAP00000031534/1-1284 AFVELASRCQ AVICCRVTPK QKALIVALVK KYQNVVTLAI GDGANDVNMI bmy_15771T0/1-1311 AFVELASQCQ AVICCRVTPK QKALIVALVK KYQDVVTLAI GDGANDVSMI BACU006482/1-1393 AFVELASRCQ AVICCRVTPK QKALIVALVK KYQDVVTLAI GDGANDVSMI 1001 1050 ENSP00000311336/1-1300 KTADVGVGLA GQEGMQAVQN SDFVLGQFCF LQRLLLVHGR WSYVRICKFL ENSBTAP00000031534/1-1284 KTADIGVGVA GQEGMQAVQN SDYVLAQFCF LRRLLLVHGR WSYMRVCKFL bmy_15771T0/1-1311 KTADIGVGLA GQEGMQAVQN SDYVLAQFCF LRRLLLVHGR WSYMRVCKFL BACU006482/1-1393 KTADIGVGLA GQEGMQAVQN SDYVLAQFCF LRRLLLVHGR WSYMRVCKFL 1051 1100 ENSP00000311336/1-1300 RYFFYKSMAS MMVQVWFACY NGFTGQPLYE GWFLALFNLL YSTLPVLYIG ENSBTAP00000031534/1-1284 RYFLYKTLAG MMVQIWFAFY SGFTAQPLYE GWFLALFNLL YSTLPVLYIG bmy_15771T0/1-1311 RYFIYKTLAS MMVQIWFAFY SGFTAQPLYE GWFLALFNLL YTTLPVLYVG BACU006482/1-1393 RYFIYKTLAS MMVQIWFAFY SGFTAQPLYE GWFLALFNLL YTTLPVLYIG 1101 1150 ENSP00000311336/1-1300 LFEQDVSAEQ SLEKPELYVV GQKDELFNYW VFVQAIAHGV TTSLVNFFMT ENSBTAP00000031534/1-1284 LFEQDVSAER SLELPELYIA GQKEELFNYW VILQAIAHGT ATSLVNFFMT bmy_15771T0/1-1311 LFEQDVSAER SLESPELYKA GQKDELFNYW VFLQAIAHGT ATSLVNFFMT BACU006482/1-1393 LFEQDVSAER SLELPELYMA GQKDELFNYW VFLQAIAHGT ATSLVNFFMT 1151 1200 ENSP00000311336/1-1300 LWISRDTAGP ASFSDHQSFA VVVALSCLLS ITMEVILIIK YWTALCVATI ENSBTAP00000031534/1-1284 LWVSQNSAGP VSLSDYQSFA VVVALSSLLS ITMEVILITR YWTVLSVLAI bmy_15771T0/1-1311 LWISRDSAGP VSFSDYQSFA VIVALSGLLS ITMEIILITK YWTVLSVLAI BACU006482/1-1393 LWISRDSAGP VSFSDYQSFA VIVALSGLLS ITMEIILITK YWTVLSVLAI 1201 1250 ENSP00000311336/1-1300 LLSLGFYAIM TTTTQSFWLF RVSPTTFPFL Y--------- ---------- ENSBTAP00000031534/1-1284 FLSLCFYVVM TSLTQSMWLF KHSPKNFPFL Y--------- ---------- bmy_15771T0/1-1311 FFSLGFHAVM TWLTQSIWLF KISPKTFPFL CEPPAGTGQW GGPLGLLGHT BACU006482/1-1393 FFSLGFYGVM TWLTQSIWLF KVSPKTFPFL X--------- ---------- 1251 1300 ENSP00000311336/1-1300 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031534/1-1284 ---------- ---------- ---------- ---------- ---------- bmy_15771T0/1-1311 GGGVCAQGMS VSFGNFHKGI PGVKGGEGDG VLGGEGHQAG PGEATPQAIH BACU006482/1-1393 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000311336/1-1300 -------ADL SVMSSPSILL VVLLSVSINT FPVLALRVIF PALKELRAKE ENSBTAP00000031534/1-1284 -------ADL NVLTQPPIML VILLNVSLNT LPMLAFRVIY QALKKPQRKE bmy_15771T0/1-1311 DPALSPDADL NVLSQPPILL VILLNVSLNT LPVLAFRIIY QALQKPGPKE BACU006482/1-1393 ---------- ---------- XXLLNVSLNT LPVLAFRIIY QALQKPGPKE 1351 1400 ENSP00000311336/1-1300 EKVEEGPSEE IFTMEPLPHV HRESRARRSS YAFSHREGYA NLITQGTILR ENSBTAP00000031534/1-1284 E-VEKVTSEE IIAVEPVPCI RRESPARRSS YAFSHREGYA DLITQGTILR bmy_15771T0/1-1311 E-EEKTTSEE IITVEPIPHV AREARTRRSS YAFSHREGYA DLITQGTILR BACU006482/1-1393 E-EEKTTSEE IITVEPIPHV LREARTRRSS YAFSHREGYA DLITQGTILR 1401 1450 ENSP00000311336/1-1300 RGPGVSSDIA SESLDPSDEE AAS------- ---------- ---------- ENSBTAP00000031534/1-1284 RSPGVNSDML VDHTMPPDE- PSG------- ---------- ---------- bmy_15771T0/1-1311 RSPGVNSDML VDHTRPPDEL PSGMEESSWY ARKMSFLGRN RRQHQGKVSS BACU006482/1-1393 RSPGVNSDML VDHTRPPDEL PSSMEDSSWY PRKMSFLGRN RRQHQGKVSS 1451 1500 ENSP00000311336/1-1300 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031534/1-1284 ---------- ---------- ---------- ---------- ---------- bmy_15771T0/1-1311 EDVQPAYEVS SSLPVDGQSS PYQESQHSLT KNRLSGSLQE KLPKRQERSL BACU006482/1-1393 EDVQPASEVS SSLPVDGQSS PYQESQHSLT KNRLSGSLQE KLPKRQERSL 1501 1550 ENSP00000311336/1-1300 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031534/1-1284 ---------- ---------- ---------- ---------- ---------- bmy_15771T0/1-1311 SYEPWPYTPE SLPPTKETPL SAEESQMTSS ESQMLPSSQL SLKSQSAHLQ BACU006482/1-1393 SYEPWPYTPE SLPPTKETPL SAEESQMTSS ESQMLPSSQL SLKSQSAHLQ 1551 1600 ENSP00000311336/1-1300 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031534/1-1284 ---------- ---------- ---------- ---------- ---------- bmy_15771T0/1-1311 EKTSLWKIRK LSWKNWPYTW QEEPGPPKEG MVPVSNSNLT ALMETPPPTA BACU006482/1-1393 EKTSLWKIWK LSWKNWPYTW QKEPGPPKEG TVPVSNSNLT ALMETPPPTA 1601 1650 ENSP00000311336/1-1300 ---------- ---------- ---------- ---------- ----SPKESQ ENSBTAP00000031534/1-1284 ---------- ---------- ---------- ---------- ----SMKESS bmy_15771T0/1-1311 RGSSTSEQPM EVEPSPVERQ PSPMEWLPGP SEGQTPPDLA ELPPSPEEQQ BACU006482/1-1393 RGSSTSEQPV EVEPSPVERQ PSPMECLPGP SKGQTPPDLA GLPPSPEEQQ