KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:28 2014 Check: 00 .. Name: ENSP00000342924/1-835 Len: 851 Check: 238 Weight: 1.00 Name: ENSBTAP00000031555/1-838 Len: 851 Check: 3625 Weight: 1.00 Name: ENSTTRP00000016188/1-813 Len: 851 Check: 8987 Weight: 1.00 Name: bmy_22635T0/1-556 Len: 851 Check: 1154 Weight: 1.00 Name: BACU013302/1-732 Len: 851 Check: 8930 Weight: 1.00 // 1 50 ENSP00000342924/1-835 ------MAAP ILKDVVAYVE VWSSNGTENY SKTFTTQLVD MGAKVSKTFN ENSBTAP00000031555/1-838 MAAPGSLGGP VLKDVVAYVE VWSANGTENY SKTFRNQLVD MGAKVSKTFN ENSTTRP00000016188/1-813 ---------- ----VVAYVE VWSASGTENY SKTFTNQLAD MGAKVSKTFN bmy_22635T0/1-556 ---------- ---------- ---------- ---------- --MDVTKDIR BACU013302/1-732 ---------- ---------- ---------- ---------- MGAKVSKTFN 51 100 ENSP00000342924/1-835 KQVTHVIFKD GYQSTWDKAQ KRGVKLVSVL WVEKCRTAGA HIDESLFPAA ENSBTAP00000031555/1-838 KQVTHVVFKD GYQSTWEKAQ KRGVKLVSVL WVDKCRVAGV HIDESLFPAA ENSTTRP00000016188/1-813 KQVTHVVFKD GYQSTWAKAQ KRGVKLVSVL WVEKCRTAGV HIDESLFPAA bmy_22635T0/1-556 NVYGRVLFLS -----YTIAI R--YYFFYVL FVQ------- ---------- BACU013302/1-732 KQVTHVVFKD GYQSTWAKAR KRGVKLVSVL WVEKCRTAGV HIDESLFPAA 101 150 ENSP00000342924/1-835 NMNEHLSSLI KKKRKCMQPK DFNFKTPEND KRFQKKFEKM AKELQRQKTN ENSBTAP00000031555/1-838 NTNQHLPSLL KKKRKCMQPK DFIPRTPEND KRLQRKFEKM AKELQQQKTT ENSTTRP00000016188/1-813 NPNEHLPSLM KKKRKCMQPK DFMPKTPEND KRLQKKFEKM AKELQQQKTT bmy_22635T0/1-556 ---------- ---RKCMQPK DFIPKTPEND RRLQKKFEKM AKELQQQKTT BACU013302/1-732 NPSEHLPSLM KKKRKCMQPK DFIPKTPEND KRLQKKFEKM AKELQQQKTT 151 200 ENSP00000342924/1-835 LDDDVPILLF ESNGSLIYTP TIEINSRHHS AMEKRLQEMK EKRENLSPTS ENSBTAP00000031555/1-838 LGTNVPVLSF ESNGSLVYSP TGKVCRGHHS AMKKRLQEMK EKRENLSPTS ENSTTRP00000016188/1-813 VDNDVPVLLF ESNGSLVYSP TVKICSGHHS AVEKRLQEMK EKRENLSPTX bmy_22635T0/1-556 LGNDAPVLLF ESNGSLVYSP PVRICSGHHS AAGKRLQAMQ AKREDLSPTS BACU013302/1-732 LGNDAPVLLF EANGSLVYSP PVRICSGHHS AAGKRLQAVQ AEREDLFPTS 201 250 ENSP00000342924/1-835 SQMIQQSHDN PSNSLCEAPL NISRDTLCSD EYFAGGLHSS FDDLCGNSGC ENSBTAP00000031555/1-838 SQMIEQSDDN TVNLLHEASL NLSHDTLCSD NSLAGGLPVS ADDLCGGSAS ENSTTRP00000016188/1-813 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX DSFAGVLRLS FDDLCGSSGC bmy_22635T0/1-556 SQMVEKSDDN TVNSLCEASL NLSHDTLCSE DFFAGVLHLS FDDLCGSSGC BACU013302/1-732 SQMVEKSDDN TVNSLCEASL NLSHDTLCSE DFFAGVLHLS FDDLCGSSGC 251 300 ENSP00000342924/1-835 GNQERKLEGS INDIKSDVCI SSLVLKANNI HSSPSFTHLD KSSPQKFLSN ENSBTAP00000031555/1-838 GTQEGKLFEF ITERGSDVCA ASPVLQTGSV GPSAAPCPLD LLTPHRSTSS ENSTTRP00000016188/1-813 GTQQRRLGGF LDESKSAACA SSAVLKTRSV RPPASPGPLG QLTLHQPPGS bmy_22635T0/1-556 GTQQRKLGGF LDESKSAACA SSAVLKTSSV RLPASPGSLG QLTLHQSPGS BACU013302/1-732 GTQQRKLGGF LDESKSAACA SSAVLKTSSV RPPASPGSLG QLTLHQSPGS 301 350 ENSP00000342924/1-835 LSKEEINLQR NIAGKVVTPD QKQAAGMSQE TFEEKYRLSP TLSSTKGHLL ENSBTAP00000031555/1-838 PPKAETPQQS RAARGVVTPI SKPSKPVAQG SSDGKKRLSP VSSATKGRPG ENSTTRP00000016188/1-813 LSKGDTHRQR VAAGQVITPD VKPAREPAEG VFDEKRGLSA TPSVTNEPAG bmy_22635T0/1-556 LSKGDIHRQR GAAGRAITPD AKPAWEPARG VFDGKRGLSP MSSVTKEPPR BACU013302/1-732 LSKGDTHGQR GAAGRAVTPD AKPAWEPDRG VFDGKRGLSP TSSVTKEPPR 351 400 ENSP00000342924/1-835 IHSRPRSSSV KRKRVSHGSH SPPKEKCKRK RSTRRSIMPR LQLCRSEDRL ENSBTAP00000031555/1-838 GREQHMGSSA KRKKTPENSC PGLEERRKRR RSLGQRPAPR LRLWKAERGL ENSTTRP00000016188/1-813 GPSCPQSPSA TRRRVSANSS PPPEERLSKR RCLGWPPAPR LQL---ENSP bmy_22635T0/1-556 GPSCPQSSSA TRRRVSANSR PPPEERLRKR RSLGRPPAPR LQP---ENSP BACU013302/1-732 GPSCPQSSSA TGRRVSANSR PPPEERLRKR RSLGWPPAPR VQP---ENSP 401 450 ENSP00000342924/1-835 QHVAGPALEA LSCGESSYDD YFSPDNLKER YSENLPPESQ LPSSPAQLSC ENSBTAP00000031555/1-838 RSVRRPAVKS LALEEFSYDD YFSPDNLKER VSEGLL-GEQ LPSRPPALHC ENSTTRP00000016188/1-813 KCASSSAVET LGRGESSYDD YFSPDNLKER DSGSLLPGVQ PPAGPALLHC bmy_22635T0/1-556 KCASSSAVQT LGRGESSYDD YFSPNNLKER DLESLLPGVQ PPAGPALLHC BACU013302/1-732 KCVSRSAIET LGRGESSYDD YFSPNNLKER DSESLLPRVQ PPAGPALLHC 451 500 ENSP00000342924/1-835 -RSLSKKERT SIFEMSDFSC VGKKTRTVDI TNFTAKT--- ISSPRKTGNG ENSBTAP00000031555/1-838 QRSLSKTERT SLLDRADLSL IGRSPRPAVS TCSTAK---- ---PALSGAD ENSTTRP00000016188/1-813 MRSLSRRERT SLLERADFSC IGRSPRSAGG TDSTVKAGFR LQKPANYGAD bmy_22635T0/1-556 TRSLSRRERT SLLERADFSC IGRNPRSADG TDSTVKAGFR LQKPANYGAD BACU013302/1-732 TRSLSRRERT SLLERADFSC IGRNPRSADG TYSTVKAGFR LQKPANYGAD 501 550 ENSP00000342924/1-835 EG-RATSSCV TSAPEEALRC CRQA---GKE DACPEGNGFS YTIEDPALPK ENSBTAP00000031555/1-838 AGLGGGTSGG TSAADRTPGP CPRAEAQGGG DVRPAGGDAP QTRSQLIPQT ENSTTRP00000016188/1-813 PGLSSVTSKE TPAAEGTPGD CPRAEARGGG DARPGGSDSP HTLNGLTPQK bmy_22635T0/1-556 PGLSSVTSKE TPAAEGTPGD CPRAEAQRRG DACPGGSDSP HILDGLTPQK BACU013302/1-732 PGLSSVTSKE TPAAEGTPGD CPRAEAQRRG DARPGGSDSP HTLDGLTPQK 551 600 ENSP00000342924/1-835 GHDDDLTPLE GSLEEMKEAV GLKSTQNKGT TSKISNSSEG EAQSEHEPCF ENSBTAP00000031555/1-838 GPQGDRSPLK GSREETEEWT DPQSTQKEGA PPETTES--A AVHSEGKPSA ENSTTRP00000016188/1-813 GLRGDFTSLK GSNKEVRGWI DITSTQKGDT PSEMVNSPES EAQSDDKLNF bmy_22635T0/1-556 GRRGDFTPLK GSNKEMKGWI DVKSTQKEDT PSKMANSPEG EARSDYKLNC BACU013302/1-732 GRRGDFTPLK GSNKEMKGWI DIKSTQKEDT PSKMVNSPEG EALSDYKLNC 601 650 ENSP00000342924/1-835 IVDCNMETST EEKENLPGGY SGSVKNRPTR HDVLDDSCDG FKDLIKPHEE ENSBTAP00000031555/1-838 AGGYAEDRPA GARGAPAHGS SGSVKSGPTR HSVVASSRKG CQDLLRLREE ENSTTRP00000016188/1-813 VGDWDVEKSA EAMEELPRGC SESVKRGPAR HDVLDGSW-S FKDLVRPHEE bmy_22635T0/1-556 VGDCDVEKSA EAREELPRGC SESM------ -------CVS C--------- BACU013302/1-732 AGDCDVEKSA EAREELPRGC SESVKRGPTR HDVLDGSWEG FEDLIRPHEE 651 700 ENSP00000342924/1-835 LKKSGRGKKP TRTLVMTSMP SEKQNVVIQV VDKLKGFSIA PDVCETTTHV ENSBTAP00000031555/1-838 SGKKGRGQEP TRTLVMTSMP SEKYSVVIQV VNRLKGFSLA QEVCGSTTHV ENSTTRP00000016188/1-813 PRKREKGQKX XXXLVMTSMP SEKQNVVNQV VDKLKGFSLA GEACGCPTHV bmy_22635T0/1-556 ---------- YQSLHYRNMQ ---------- ---------- ---------- BACU013302/1-732 SRKREKGQKP TRTLVMTSMP SEYCGLWKWV IGFLRNRSNS QTT------- 701 750 ENSP00000342924/1-835 LSGKPLRTLN VLLGIARGCW VLSYDWVLWS LELGHWISEE PFELSHHFPA ENSBTAP00000031555/1-838 LAGKPRRTLS VLLGIARGCW ILSFEWVLWS LEMGHWISEE PFELSNYFPA ENSTTRP00000016188/1-813 LARKPRRTQN VLRGIASGCW ILSFERVLWS LEMGHWISEE PFEESDYFPA bmy_22635T0/1-556 ---------- ---------- ---------- ---------- ---------- BACU013302/1-732 ---------- ---------- --SLQLLLTH SAQGLGLREP PAAAVKETPI 751 800 ENSP00000342924/1-835 APLCRSECHL SAGPYRGTLF ADQPAMFVSP ASSPPVAKLC ELV--HLCGG ENSBTAP00000031555/1-838 APLCRQERLS SAGQYRGTLF ADQPTMFISP ASNPPRAKLG ELV--VLCGG ENSTTRP00000016188/1-813 APFCRQGRLS STRRYRGALF ADQPTVFITP ASGLLRAKLG ELV--VLCGV bmy_22635T0/1-556 ---------- ---------- ---------- ---------- ---------- BACU013302/1-732 NPW------- -------LLL TARPVVLGRS SEGRGGRRKG ALLYRHVCRL 801 850 ENSP00000342924/1-835 RVSQVPRQAS IVIGPYSGKK KATVKYLSEK WVLDSITQHK VCAPENYLLS ENSBTAP00000031555/1-838 RVTQVPRQAS IFIGPSPGRK KETVKYLSET WILDSISQHK VCASENHLLP ENSTTRP00000016188/1-813 WVTHVPRQAS ICIGPVPRKK AATVTYLSER WIL------- ---------- bmy_22635T0/1-556 ---------- ---------- ---------- ---------- ---------- BACU013302/1-732 WVLWFSREAS SFVRLSDA-- ---------- ---------- ---------- 851 900 ENSP00000342924/1-835 Q ENSBTAP00000031555/1-838 - ENSTTRP00000016188/1-813 - bmy_22635T0/1-556 - BACU013302/1-732 -