KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:30 2014 Check: 00 .. Name: ENSBTAP00000031749/1-249 Len: 275 Check: 9991 Weight: 1.00 Name: ENSP00000339207/1-266 Len: 275 Check: 1763 Weight: 1.00 Name: bmy_03721T0/1-227 Len: 275 Check: 282 Weight: 1.00 Name: BACU005435/1-78 Len: 275 Check: 5874 Weight: 1.00 Name: ENSTTRP00000005031/1-194 Len: 275 Check: 7353 Weight: 1.00 // 1 50 ENSBTAP00000031749/1-249 MAQEKMELDF EPDTSDGGTL RRSNSAPLIH GLSNWVGAFN PFTFKCVRNS ENSP00000339207/1-266 MAQEKMELDL EPDTSYGGTL RRSSSAPLIH GLSDLSQVFQ PYTLRTRRNS bmy_03721T0/1-227 MAQEKMELDF ESDTSDGVTL RRSNSAPLIH GLSDLSQVFQ PYTFRTRRNS BACU005435/1-78 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005031/1-194 ---------- ---------- ---------- ----WADKIQ MWHQRC---- 51 100 ENSBTAP00000031749/1-249 KSEETRHLPL LSTSPNRIPS SRLHQIKREE GMDIMNRETA HEREVQTAMQ ENSP00000339207/1-266 TTIMSRHSLL LSSSPNRIPS SRLHQIKREE GLDMVNRETA HEREMQTAMQ bmy_03721T0/1-227 TAIMSRHSLL LSSSPNRIPS SRLHQIKREE GMDMMNRETA HEREVQTAMQ BACU005435/1-78 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005031/1-194 ---------- ---------- ---------- -MDMMR--TA HE-EVQTAMQ 101 150 ENSBTAP00000031749/1-249 ISQSWDESLS LSDSDFDKQE KLYSPKRIDF TPVSPAPSPT RGFGKQCFSP ENSP00000339207/1-266 ISQSWDESLS LSDSDFDKPE KLYSPKRIDF TPVSPAPSPT RGFGK----- bmy_03721T0/1-227 ISQSWDESLS LSDSDFDKPE KLYSPKRIDF TPVSPAPSPT RGFGKQCFSP BACU005435/1-78 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005031/1-194 ISQSWDESLS LSDSDFDKPE KLYSPKRIDF TPVSPAPSPT RGFGK----- 151 200 ENSBTAP00000031749/1-249 SLQMFVSSSG LPPSPVPSPR RFS-TRSQSP IKCIRPSVLA PLKRKGEMET ENSP00000339207/1-266 ---MFVSSSG LPPSPVPSPR RFS-RRSQSP VKCIRPSVLG PLKRKGEMET bmy_03721T0/1-227 SLQMFVSSSG LPPSPVPSPR RFSSRRSQSP VKCIRPSVLG PLKRKGEMET BACU005435/1-78 ---------- ---------- ---------- ---------- -------MET ENSTTRP00000005031/1-194 ---MFVSSSG LPPSPVPSPR RFS-RRSQSP VKCIRPSVLG PLKRKGEMET 201 250 ENSBTAP00000031749/1-249 ESQPKRLFQG TTNMLSPEAA QLSDLSS--- ---------- --------WW ENSP00000339207/1-266 ESQPKRLFQG TTNMLSPDAA QLSDLSSCSD ILDGSSSSSG LSSDPLAKGS bmy_03721T0/1-227 ESQPKRLFQG TTTMLSPEAA QLSDLSS--- ---------- ---------- BACU005435/1-78 ESQPKRLFQG TTTMLSPEAA QLSDLSSCSD ILDGSSSSSG LSSDSLAKGS ENSTTRP00000005031/1-194 ESQPKRLFQG TTTMLSPEAA QLSDLSSCSD ILDGSSSRSG LSSDSLAKGS 251 300 ENSBTAP00000031749/1-249 CFQGEEIPAL TRCVEHLQMN E---- ENSP00000339207/1-266 ATAESPVACS NSCSSFILMD DLSPK bmy_03721T0/1-227 ---------- ---------- ----- BACU005435/1-78 TTAEAPVACS NSCSPFILMD DLSPK ENSTTRP00000005031/1-194 TTAEAPVACS NSCSPFILMD DLSPK