KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:32 2014 Check: 00 .. Name: ENSP00000471896/1-452 Len: 488 Check: 2049 Weight: 1.00 Name: ENSTTRP00000005218/1-438 Len: 488 Check: 9030 Weight: 1.00 Name: ENSBTAP00000031815/1-417 Len: 488 Check: 6458 Weight: 1.00 Name: bmy_06371T0/1-457 Len: 488 Check: 3692 Weight: 1.00 Name: BACU011071/1-419 Len: 488 Check: 8911 Weight: 1.00 // 1 50 ENSP00000471896/1-452 MGTPKPRILP WLVSQLDLGQ LEGVAWVNKS RTRFRIPWKH GLRQDAQQED ENSTTRP00000005218/1-438 MGTQKPRILP WLVSQLDQGQ LEGVAWLDES RTRFRIPWKH GLRQDAQLED ENSBTAP00000031815/1-417 MGTQKPRILP WLISQLDRGE LEGVAWLGES RTRFRIPWKH GLRQDAQQED bmy_06371T0/1-457 MGTQKPRILP WLVSQLDQGQ LEGVAWLDES RTRFRIPWKH GLRQDAQLED BACU011071/1-419 MGTQKPRILP WLVSQLDQGQ LEGVAWLDES RTRFRIPWKH GLRQDAQQED 51 100 ENSP00000471896/1-452 FGIFQAWAEA TGAYVPGRDK PDLPTWKRNF RSALNRKEGL RLAEDRSKDP ENSTTRP00000005218/1-438 FGIFQAWAEA SGAYTPGKDK PDLPTWKRNF RSALNRKEAL RLAEDHSKDP ENSBTAP00000031815/1-417 FGIFQAWAVA SGAYTPGKDK PDLPTWKRNF RSALNRKEVL RLAEDHSKDS bmy_06371T0/1-457 FGIFQAWAEA SGAYTPGKDK PDLPTWKRNF RSALNRKEAL RLAEDHSKDP BACU011071/1-419 FGIFQAWAEA SGAYTPGKDK PDLPTWKRNF RSALNRKEAL RLAEDHSKDP 101 150 ENSP00000471896/1-452 HDPHKIYEFV NSGVGDFSQP DTSPDTNGGG STSDTQEDIL DELLGNMVLA ENSTTRP00000005218/1-438 HNPHKIYEFV TSGVGNLAEA DTSLDTNGRC STSDIQEDIL EKLLSDMDLA ENSBTAP00000031815/1-417 QDPHKIYEFV NSGVRDIPEP DTSQD-NGRH NTSDTQEDTL EKLLSDMDLS bmy_06371T0/1-457 HDPHKIYEFV TSGVGDLSEP DTSLDTNGRY STSDIQEDIL EKLLSDMDLA BACU011071/1-419 HDPHKIYEFV TSGVGDLSEP DTSLDTSGRY STSDIQEDIL EKLLSDMDLA 151 200 ENSP00000471896/1-452 PLPDPGPPSL AVAPEPCPQP LRSPSLDNPT PFPNLGPSEN PLKRLLVPGE ENSTTRP00000005218/1-438 P--DGGPSSL TMAPENPPQL LLGPNLDVPA PCPMPGPPEN PLKQLLVSGE ENSBTAP00000031815/1-417 P---GGPSNL TMASEKPPQF LQSPDSDIPA LCPNSGLSEN PLKQLLANEE bmy_06371T0/1-457 P--DGGPPSL TMAPENPPQL LLSPNLDVPA PCPKPGPPEN PLKQLLVSEE BACU011071/1-419 P--DGGPSSL TMAPENPPQL LLSPNLDVPA PCPKPGPPEN PLKQLLVSEE 201 250 ENSP00000471896/1-452 EWEFEVTAFY RGRQVFQQTI SCPEGLRLVG SEVGDRTLPG WPVTLPDPGM ENSTTRP00000005218/1-438 EWEFEVTVFY RGCQVFQQTV FCPGGLRLVG SEAGDRTLPG QPIRLPDPAA ENSBTAP00000031815/1-417 DWEFEVTAFY RGCQVFQQTV FCPGGLRLVG SEAGDRMLPG QPIRLPDPAT bmy_06371T0/1-457 EWEFEVTVFY RGCQVFQQTV FCPGGLRLVG SEAGDRTLPG QPIRLPDPAA BACU011071/1-419 DWEFEVTVFY RGCQVFQQTV FCPGGLRLVG SEAGDRTLPG QPIRLPDPAA 251 300 ENSP00000471896/1-452 SLTDRGVMSY VRHVLSCLGG GLALWRAGQW LWAQRLGHCH TYWAVSEELL ENSTTRP00000005218/1-438 SLTDRGVTDY VQRVLSCLGG GLALWRAGQW LWAQRLGHCR VYWAVGEELL ENSBTAP00000031815/1-417 SLTDKSVTDY VQRVLSCLGG GLALWRAGQW LCAQRLGHCH VYWAIGEELL bmy_06371T0/1-457 SLTDRGVTGY VQRVLSCLGG GLALWRAGQW LCAQRLGHCH VYWAVGEELL BACU011071/1-419 SLTDRGVTGY VQRVLSCLGG GLALWRAGQW LCAQRLGHCH VYWAVGEELL 301 350 ENSP00000471896/1-452 PNSGHGPDGE -VPKDK---- ---------- ---EGGVFDL GPFIVGSW-- ENSTTRP00000005218/1-438 PNSGHRPDGE -VPKDR---- ---------- ---EGGVFNM GPFIAGSW-- ENSBTAP00000031815/1-417 PSCGHKPDGE -VPKDR---- ---------- ---EGGVFNL GPFI------ bmy_06371T0/1-457 PSSGHRPDGS WAPRSDCLHR RKQTLTTLHS LVLRGAVMAP GPTMDQEARD BACU011071/1-419 PNSGHRPDGE -VPKDR---- ---------- ---EGGVFNM GPFI------ 351 400 ENSP00000471896/1-452 ----APRSDY LHGRKRTLTT LCPLVLCGGV MAPGPAVDQE ARDGQG---- ENSTTRP00000005218/1-438 ----APRSDC LHRRKQTLTT LHPLVLRGAV MAPGPTMDQE ARDGQG---- ENSBTAP00000031815/1-417 ----TDLITF IEGSRRSPLY TLWFCVGQSW PQDQPWIKRL VMVK------ bmy_06371T0/1-457 GQVPSEKLQL LRVSASTSSS SGASGVPPTA SPPKPILRSP NHVEVGGLQV BACU011071/1-419 ----ADLIAF IEGSRRSPRY TLWFCVGQSW PQDQPWIKRL VMVK------ 401 450 ENSP00000471896/1-452 --------CA HVPQGLGRNG PGRGCLLPGE YCGPAHFQQP PTLPHLRPVQ ENSTTRP00000005218/1-438 --------CP HVPQSPARHG TGRGCLLPGE HCGPSHFQ-P PTLPHLRPVQ ENSBTAP00000031815/1-417 ----VVPMCL RVLVDIARQG ---------- --GASSLENT VDL-HISNSD bmy_06371T0/1-457 LAGWVVPMCL RALLDMARVG ---------- --GASSLENT VDL-HISNSH BACU011071/1-419 ----VVPMCL RALLDMARVG ---------- --GASSLENT VDL-HISNSH 451 500 ENSP00000471896/1-452 GLPAGLGGGH GFPGPWGELS PRSSWCASNP PVPHHLNQ ENSTTRP00000005218/1-438 GLPPGPGRGH GLLGHWGGLS PN-------- ---FHLDQ ENSBTAP00000031815/1-417 PLSLTPDQYM ACLQDLAE-- ---------- ----DMDF bmy_06371T0/1-457 PLSLTSDQYK AYLQDLVE-- ---------- ----DMDF BACU011071/1-419 PLSLTSDQYK AYLQDLVE-- ---------- ----DMDF