KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:35 2014 Check: 00 .. Name: ENSP00000438895/1-239 Len: 257 Check: 4420 Weight: 1.00 Name: ENSBTAP00000031847/1-240 Len: 257 Check: 6032 Weight: 1.00 Name: ENSTTRP00000003079/1-85 Len: 257 Check: 3896 Weight: 1.00 Name: bmy_15438T0/1-256 Len: 257 Check: 3285 Weight: 1.00 Name: BACU006633/1-240 Len: 257 Check: 7783 Weight: 1.00 // 1 50 ENSP00000438895/1-239 MGDLWLFLLL PLS--AFHGV KGCLECDPKF IEDVGSLLGN LIPSEVPGRT ENSBTAP00000031847/1-240 MGDLWLLLLL PLSLAAFHGV KGCLECDPKF IEEVKSLLGK LVPPEVPGRT ENSTTRP00000003079/1-85 ---------- ---------- ---------- ---------- ---------- bmy_15438T0/1-256 MGDLRLLLLL PLSLAAFHGV KGCLECDPKF IEDIKSLLVK LVPSEVPGRT BACU006633/1-240 MGDLRLLLLL PLSLAAFHGV KGCLECDPKF IEDIKSLLVK LVPSEVPGRT 51 100 ENSP00000438895/1-239 QLLERQIKEM IHLSFKVSHS DKRLRVLAVQ QVVKLRTWLK NEFYKLGNET ENSBTAP00000031847/1-240 HMLERQMKEM IRLSFKVSHR DKMLRVLAVQ KVVDLRTWLK IELDKLSKEK ENSTTRP00000003079/1-85 ---------- ---------- ---------- ----ITTW-- ---------- bmy_15438T0/1-256 HLLERQIKEM IRLSFKVSHR DKMLRVLAVQ KVVNLRTWLK NELYKLSNET BACU006633/1-240 HLLERQIKEM IRLSFKVSHR DKMLRVLAVQ KVVNLRTWLK NELYKLSNET 101 150 ENSP00000438895/1-239 WKGVFIYQGK LLDVCQNLES KLKELLKNFS EIACSEDCIV VEGPILDCWT ENSBTAP00000031847/1-240 WKGVFILQGR LLDIRKNLDS KLEKLLKKFS EVACSEDCVV TEGPILDCWT ENSTTRP00000003079/1-85 ---------- ---------- ---------- ---------- ---------- bmy_15438T0/1-256 WKGVLILQVK LLDVRQNLES KLKELLKNFS EVACSEDCVV TEGPILDCWT BACU006633/1-240 WKGVLILQVK LLDVRQNLES KLKELLKNFS EVACSEDCVV TEGPILDCWT 151 200 ENSP00000438895/1-239 CLRMTNRCFK GEYCGDEDPR KAENREIALF LILLATAVIL GSAVLL---- ENSBTAP00000031847/1-240 CLRITSRCFR GEYCEEDDPK KAESREIGLF LILLAEGVIL GGVLLL---- ENSTTRP00000003079/1-85 -------CFK GEYCAEDDPK KAENQEITLF LILLAEGVIL GGALLL---- bmy_15438T0/1-256 CLRITTQCFK GEYCAEDDPK KAENQEIALF LILLAEGVIL GGALLLWATN BACU006633/1-240 CLRITTRCFK GEYCAEDDPK KAENQEIALF LILLAEGVIL GGALLL---- 201 250 ENSP00000438895/1-239 ---------- --FHFCIFHR RKMKAIRRSL KEYVEKKLEE LMGKIDEKEE ENSBTAP00000031847/1-240 ---------- --FHFCISHQ RKMKAIRRSL KTYLEKKLEE LMGIKDEK-E ENSTTRP00000003079/1-85 ---------- --FHFCISHR RKMKAIRRSL KKYLERKLEI --GIMDEK-E bmy_15438T0/1-256 TEVGIILFLY SRFHFCISHR RKMKAIRRSL KKYLEKKLEE LMGIMDEK-E BACU006633/1-240 ---------- --FHFCISHR RKMKAIRRSL KKYLEKKLEE LMGIMDEK-E 251 300 ENSP00000438895/1-239 KDFRLRK ENSBTAP00000031847/1-240 KDFRGRE ENSTTRP00000003079/1-85 KDFGGRK bmy_15438T0/1-256 KDFGGRK BACU006633/1-240 KDFGGRK