KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:36 2014 Check: 00 .. Name: ENSP00000322991/1-392 Len: 469 Check: 6861 Weight: 1.00 Name: ENSBTAP00000031858/1-393 Len: 469 Check: 9186 Weight: 1.00 Name: ENSTTRP00000001170/1-393 Len: 469 Check: 5958 Weight: 1.00 Name: bmy_06413T0/1-444 Len: 469 Check: 7531 Weight: 1.00 Name: BACU018463/1-386 Len: 469 Check: 3763 Weight: 1.00 // 1 50 ENSP00000322991/1-392 MAAAALGQIW ARKLLSVPWL LCGPRRYASS SFKAADLQLE MTQKPHKKPG ENSBTAP00000031858/1-393 MATAALRQIW IPRFLPVPWF LCGSRRYASS SFKAADLQLE MTQEPHKKPD ENSTTRP00000001170/1-393 MAAAALRQIW TRKFLPVPWL LCGLRRYDSS SFKAADLQLE MTQEPHKKPD bmy_06413T0/1-444 MAAAALRQ-- ---------- ---------- ---AADLQLE MTQEPHKKPD BACU018463/1-386 -------QIW TRKFLPVPWL LCGPRRYDSS SFKAADLQLE MTQEPHKKPD 51 100 ENSP00000322991/1-392 PGEPLVFGKT FTDHMLMVEW N-DKGWGQPR IQPFQNLTLH PASSSLHYSL ENSBTAP00000031858/1-393 PSQPLLFGKT FTDHMLMVEW NQEKGWGQPR IQPFQNLTLH PACSALHYSL ENSTTRP00000001170/1-393 PSKPLLFGKT FTDHMLMVEW NREKGWGQPR IQPFQNLTVH PACSALHYSL bmy_06413T0/1-444 PSKPLLFGKT FTDHMLMVEW NREKGWGQPR IQPFQNLTLH PACSALHYSL BACU018463/1-386 PSKPLLFGKT FTDHMLMVEW NREKGWGQPR IQPFQNLTLH PACSALHYSL 101 150 ENSP00000322991/1-392 QLFEGMKAFK GKDQQVRLFR PWLNMDRMLR SAMRLCLPSF DKLELLECIR ENSBTAP00000031858/1-393 QLFEGMKAFK GGDQRVRLFR PWLNMERMLR SALRLCLPSF DKIELLECIR ENSTTRP00000001170/1-393 QLFEGMKAFK GRDQCVRLFR PWLNMDRMLR SALRLCLPSF DKVELLQCIR bmy_06413T0/1-444 QLFEGMKAFK GRDQCVRLFR PWLNMDRMLR SALRLCLPSF DKVELLQCIR BACU018463/1-386 QLFEGMKAFK GRDQCVRLFR PWLNMDRMLR SALRLCLPGF DKVELLQCIR 151 200 ENSP00000322991/1-392 RLIEVDKDWV PDAAGTSLYV RPVLIGNEPS LGVSQPTRAL LFVILCPVGA ENSBTAP00000031858/1-393 RLVEVDQDWV PGSMGTSLYV RPVLIGNEPS LGVGHPTRAL LFVILSPVGA ENSTTRP00000001170/1-393 RLVEVDKDWV PDSSGTSLYV RPVLIGNEPS LGVGNPTRAL LFVILCPVGA bmy_06413T0/1-444 RLVEVDKAWV PDSSGTSLYV RPVLIGNEPS LGVGKPTRAL LFVILCPVGA BACU018463/1-386 RLVEVDKAWV PDSSGTSLYV RPVLIGNEPS LGVGKPTRAL LFVILCPVGA 201 250 ENSP00000322991/1-392 YFPGGSVTPV SLLADPAFIR AWVGGVGNYK LGGNYGPTVL VQQEALKRGC ENSBTAP00000031858/1-393 YFPGDALKPV SLLADPSFIR AWVGGVGNYK LGGNYGPTVL VQQEAQKKGC ENSTTRP00000001170/1-393 YFPGDALSPV SLLADPSFIR AWVGGVGDYK LGGNYGPTVF VQQEALKKGC bmy_06413T0/1-444 YFPGDALSPV SLLADPSFIR AWVGGVGDCK LGGNYGPTVF VQQEAQKKGC BACU018463/1-386 YFPGDALSPV SLLADPSFIR AWVGGVGDCK LGGNYGPTVF VQQEAQKKGC 251 300 ENSP00000322991/1-392 EQVLWLYGPD HQLTEVGTMN IFVYWTHEDG VLELVTPPLN GVILPGVVRQ ENSBTAP00000031858/1-393 EQVLWLYGPD HELTEVGTMN IFVFWTYEDG VLELVTPPLD GIILPGIVRQ ENSTTRP00000001170/1-393 EQVLWLYGPD HQLTEVGTMN IFIFWTHEDG ALELVTPPLD GVILPGVVRQ bmy_06413T0/1-444 EQVLWLYGPD HQLTEVGTMN IFVFWTHEDG ALELVTPPLD GVILPGVVRQ BACU018463/1-386 EQVLWLYGPD HQLTEVGTMN IFVFWTHEDG ALELVTPPLD GVILPGVVRQ 301 350 ENSP00000322991/1-392 SLLDMAQTWG EFRVVERTIT MKQLLRALEE GRVREVFGSG TACQVCPVHR ENSBTAP00000031858/1-393 SLLDLARTWG EFRVVERKIT MKEFLRALKD GRVREVFGSG TACQVCPVHQ ENSTTRP00000001170/1-393 SLLDLARTWG EFRVAERKIT MKEFLQALED GRVREVFGSG TACQVCPVHR bmy_06413T0/1-444 SLLDLARTWG EFRVAERKIT MKEFLQALED GRVREVFGSG TACQVCPVHR BACU018463/1-386 SLLDLARTWG EFRVAERKIT MKEFLQALED GRVREVFGSG TACQVCPVHR 351 400 ENSP00000322991/1-392 ILYKDRNLHI PTMENGPELI LRFQKELKEI QYGIRAHE-- WMF------- ENSBTAP00000031858/1-393 ILYQGKHFHI PTMENGPQLI LRFHKELKAI QYGSKAHE-- WML------- ENSTTRP00000001170/1-393 ILYQGKHLHI PTMENGPELI LRFHKELKAI QYGAKAHE-- WML------- bmy_06413T0/1-444 ILYQGKHLHI PTMENGPELI LRFHKELKAI QVRCTCWEMG WMLVPQRNSL BACU018463/1-386 ILYQGKHLHI PTMENGPELI LRFHKELKAI QYGTEAHE-- WML------- 401 450 ENSP00000322991/1-392 ---------- ---------- ----PV---- ---------- ---------- ENSBTAP00000031858/1-393 ---------- ---------- ----PV---- ---------- ---------- ENSTTRP00000001170/1-393 ---------- ---------- ----PV---- ---------- ---------- bmy_06413T0/1-444 WNKSPRVDAT CVMLRAVLDH STDPPTCSIQ SLLDLRLHTS DSPKVQYEIK BACU018463/1-386 ---------- ---------- ----PV---- ---------- ---------- 451 500 ENSP00000322991/1-392 ---------- --------- ENSBTAP00000031858/1-393 ---------- --------- ENSTTRP00000001170/1-393 ---------- --------- bmy_06413T0/1-444 GGGPGRLGFR CPHVTLPKP BACU018463/1-386 ---------- ---------