KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:37 2014 Check: 00 .. Name: ENSP00000263274/1-919 Len: 972 Check: 5306 Weight: 1.00 Name: ENSBTAP00000031866/1-916 Len: 972 Check: 7309 Weight: 1.00 Name: ENSTTRP00000008300/1-923 Len: 972 Check: 4392 Weight: 1.00 Name: bmy_06442T0/1-905 Len: 972 Check: 1130 Weight: 1.00 Name: BACU002166/1-952 Len: 972 Check: 5239 Weight: 1.00 // 1 50 ENSP00000263274/1-919 MQRSIMSFFH PKKEGKAKKP EKEASNSSRE TEPPPKAALK EWNGVVSESD ENSBTAP00000031866/1-916 MQRSIMSFFQ PKKEGKAKKP EKETAKSIRE TESPPKVALK ERNRVVSEGD ENSTTRP00000008300/1-923 MQRSIMSFFQ PKKEGKVKKP EKEISNSTRE TESPPKVALK ERNRVVPEGD bmy_06442T0/1-905 MQRSIMSFFQ PTKEGKVKKP EKEISNSTRE TESPPKVALK ERNRVEPEGD BACU002166/1-952 MQRSIMSFFQ PTKEGKVKKP EKELSNSTRE TESPPKVALK ERNRVEPEGD 51 100 ENSP00000263274/1-919 SPVKRPGRKA ARVLGSEGE- EEDEALSPAK GQKPALDCSQ VSPPRPATSP ENSBTAP00000031866/1-916 SPVKRPGRKA TRVLGSEGEE EEEEAPTTPR SQKPASDSPQ ASPPSPVTLP ENSTTRP00000008300/1-923 SPVKRPGRKM ARVLGSEGED EEEEAPKPPK IQKRAPDSPQ VSAPSPGTPP bmy_06442T0/1-905 SPVKRPGRKV ARVLGSEGEE EEEEAPKPPK SQKPAPDSPQ VSPPSPGTPP BACU002166/1-952 SPVKRPGRKA ARVLGSEGEE EEEEAPKPPK SQKPAPDSPQ VSPPSPGTPP 101 150 ENSP00000263274/1-919 ENNASLSDTS PMDSSPSGIP KRRTARKQLP KRTIQEVLEE QSEDEDREAK ENSBTAP00000031866/1-916 ESSPSHSKPS PAVASPSGIP KRRTARKQLP KRTFQDVLKE QGEDKDPETK ENSTTRP00000008300/1-923 ESSPSHSSTS PTVVSPSGIP KRRTARKQLS KRTFQDVLQE QGKDEDGGTK bmy_06442T0/1-905 ESSPSHSSTS PTAVSPSGIP KRRTARKQLS KRTFQDVLQE QGKDEDGGAK BACU002166/1-952 ESSPSHPSTS PTAVSPSGIP KRRTARKQLS KRTFQDVLQE QGKDEDGGAK 151 200 ENSP00000263274/1-919 RKK-----EE EEEETPKESL TEAEVATEKE GEDGDQPTTP PKPLKTSKAE ENSBTAP00000031866/1-916 KKK------E EEAETPIESL PEPEGDDKEE VEGGDQPTTP PEPRKTS-TE ENSTTRP00000008300/1-923 KKRKKEEEEE EELETPTESL TEPEGGNKKE AEEGDQPRSP PEPLKTSKAK bmy_06442T0/1-905 KKK---EEEE EELEAPTESL TEPEGGKKKE AEEGDQPRSP PEPLKTS-TK BACU002166/1-952 KKK---EEEE EELETPTESL TEPEGGKKKE AEEGDQPRSP PEPLKTS-TK 201 250 ENSP00000263274/1-919 TPTESVSEPE VATKQELQEE EEQTKPPRRA PKTLSSFFTP RKPAVKKEVK ENSBTAP00000031866/1-916 SLTESVSEPG VTVKQEPQ-E DGQAQPPPKT PKTLSSFFSP RKPAVKKEAK ENSTTRP00000008300/1-923 PPTESVSEPK VAVKQGPQ-E DGQAKPPPKA PKTLSSFFSP RKPAIKQEAK bmy_06442T0/1-905 PPTESVSEPK VAVKQGPQ-E DGQAKPPPKA PKTLSSFFSP RKPAIKKEAK BACU002166/1-952 PPTESVSEPK VAVKQGPQ-E DGQAKPPSKA PKTLSSFFSP RKPAIKKEAK 251 300 ENSP00000263274/1-919 EEEPGAPGKE GAAEGPLDPS GYNPAKNNYH PVEDACWKPG QKVPYLAVAR ENSBTAP00000031866/1-916 EEGPGALRKD -EIKGHVDPA SYNPAKNNYH PIEDACWKAG QRVPYLAVAR ENSTTRP00000008300/1-923 EEGPSALRKD -ETKGHLDPS SYNPAKNNYH PVEDACWKVG QRVPYLAVAR bmy_06442T0/1-905 EEGPSALRKD -ETKG----- ---------- ---------- --VPYLAVAR BACU002166/1-952 EEGPSALRKD -ETKGHLDPS SYNPAKNNYH PVEDACWKVG QRVPYLAVAR 301 350 ENSP00000263274/1-919 TFEKIEEVSA ---------- ---RLRMVET LSNLLRSVVA LSPPDLLPVL ENSBTAP00000031866/1-916 AFEKIEEVSA ---------- ---RLRMVET LSNLLRSVVA LSPADLLPVL ENSTTRP00000008300/1-923 TFEKIEEVSA ---------- ---RLRMVET LSNLLRSVAA LSPADLLPIL bmy_06442T0/1-905 TFEKIEEVSA RWSHTPPRPV PSSRLRMVET LSNLLRSVAA LSPADLLPVL BACU002166/1-952 TFEKIEEVSA ---------- ---RLRMVET LSNLLRSVAA LSPADLLPVL 351 400 ENSP00000263274/1-919 YLSLNHLGPP QQGLELGVGD GVLLKAVAQA TGRQLESVRA EAAEKGDVGL ENSBTAP00000031866/1-916 YLSLNRLGPP QQGLELGIGE GILLKAVAQA TGRQLESVRA EVAEKGDVGL ENSTTRP00000008300/1-923 YLSLNRLGPP QQGLELGIGD GILLKAVAQA TGRQLESVRA EAAEKGDVGL bmy_06442T0/1-905 YLSLNRLGPP QQGLELGIGD GILLKXVAQA TGRQLESVRA EAAEKGDVGL BACU002166/1-952 YLSLNRLGPP QQGLELGIGD GILLKAVAQA TGRQLEAVRA EAAEKGDVGL 401 450 ENSP00000263274/1-919 VAENSRSTQR LMLPPPPLTA SGVFSKFRDI ARLTGSASTA KKIDIIKGLF ENSBTAP00000031866/1-916 VAESSRSTQR LVLPPPALTA AGVFAKFRDI AQLAGSASTT KKIDVIKGLF ENSTTRP00000008300/1-923 VAESSRSTQR LMLPPPALTA SGVFTKFRDI AQLAGSASTA KKMDVIKGLF bmy_06442T0/1-905 VAESSRSTQR LVLPPPALTA AGVFTKFRDI AQLAGSASTA KKMDVIKGLF BACU002166/1-952 VAESSRSTQR LVLPPPALTA AGVLTKFRDI AQLAGSASTA KKMDVIKGLF 451 500 ENSP00000263274/1-919 VACRHSEARF IARSLSGRLR LGLAEQSVLA ALSQAVSLTP PGQEFPPAMV ENSBTAP00000031866/1-916 VACRHSEARF IARALSGRLR LGLAEQSVLA ALAQAVSLTP PSQECPPAVV ENSTTRP00000008300/1-923 VACRHSEARF IARALSGRLR LGLAEQSVLA ALAQAVSLTP PGQEFPPAVV bmy_06442T0/1-905 VACRHSEARF IARALSGRLR LGLAEQSVLA ALAQAVSLTP PGQEFPPAVV BACU002166/1-952 VACRHSEARF IARALSGRLR LGLAEQSVLA ALAQAVSLTP PGQEFPPAVV 501 550 ENSP00000263274/1-919 DAGKGKTAEA RKTWLEEQGM ILKQTFCEVP DLDRIIPVLL EHGLERLPEH ENSBTAP00000031866/1-916 DAGKGKTAEA RKTWLEEQGM ILKQTFCEVP DLERIVPVLL EHGLERLPEH ENSTTRP00000008300/1-923 DAGKGKTAEA RKTWLEEQGM ILKQTFCEVP DLDRIVPVLL EHGVERLPEH bmy_06442T0/1-905 DAGKGKTAEA RKTWLEEQGM ILKQTFCEVP DLDRIVPVLL EHGLERLPEH BACU002166/1-952 DAGKGKTAEA RKTWLEEQGM ILKQTFCEVP DLDRIVPVLL EHGLERLREH 551 600 ENSP00000263274/1-919 CKLSPGIPLK PMLAHPTRGI SEVLKRFEEA AFTCEYKYDG QRAQIHALEG ENSBTAP00000031866/1-916 CRLSPGVPLK PMLAHPTRGV SEVLKRFEEA AFTCEYKYDG QRAQIHVLEG ENSTTRP00000008300/1-923 CRLSPXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXIHVLEG bmy_06442T0/1-905 CRLSPGVPLK PMLAHPTRGV SEVLRRFEEA AFTCEYKYDG QRAQIHVLEG BACU002166/1-952 CRLSPGVPLK PMLAHPTRGV SEVLRRFEEA AFTCEYKYDG QRAQIHVLEG 601 650 ENSP00000263274/1-919 GEVKIFSRNQ EDNTGKYPDI ISRIPKIKLP SVTSFILDTE AVAWDREKKQ ENSBTAP00000031866/1-916 GEVKIFSRNQ EDNTGRYPDI ISRIPKIKLP SVTSFILDTE AVAWDREKKQ ENSTTRP00000008300/1-923 GEVKIFSRNQ EDNTGRYPDI ISRIHKIKLP SVTSFILDAE AVAWDREKKQ bmy_06442T0/1-905 GEVKIFSRNQ EDNTGRYPDI ISRIHKIKLP SVTSFILDAE AVAWDREKKQ BACU002166/1-952 GEVKIFSRNQ EDNTGRYPDI ISRIHKIKLP SVTSFILDAE AVAWDREKKQ 651 700 ENSP00000263274/1-919 IQPFQVLTTR KRKEVDASEI QVQVCLYAFD LIYLNGESLV REPLSRRRQL ENSBTAP00000031866/1-916 IQPFQVLTTR KRKEVDAAEI QVQVCLYAFD LIYLNGKSLV REPLSRRRQL ENSTTRP00000008300/1-923 IQPFQVLTTR KRKEVDAAEI QVQVCLYAFD LIYLNGESLV REPLSRRRQL bmy_06442T0/1-905 IQPFQVLTTR KRKEVDAAEI QVQVCLYAFD LIYLNGESLV REPLSRRRQL BACU002166/1-952 IQPFQVLTTR KRKEVDAAEI QVQVCLYAFD LIYLNGESLV REPLSRRRQL 701 750 ENSP00000263274/1-919 LRENFVETEG EFVFATSLDT KDIEQIAEFL EQSVKDSCEG LMVKTLDVDA ENSBTAP00000031866/1-916 LRENFVETEG EFVFATSLDT KDTEQIAEFL EQSVKDSCEG LMVKTLDVDA ENSTTRP00000008300/1-923 LRENFVETEG EFVFATSLDT KDTDQIAEFL EQSVKDSCEG LMVKTLDVDA bmy_06442T0/1-905 LRENFVETEG EFVFATSLDT KDTDQIAEFL EQSVKDSCEG LMVKTLDVDA BACU002166/1-952 LRENFVETEG EFVFATSLDT KDTDQIAEFL EQSVKDSCEG LMVKTLDVDA 751 800 ENSP00000263274/1-919 TYEIAKRSHN WLKLKKDYLD GVGDTLDLVV IGAYLGRGKR AGRYGGFLLA ENSBTAP00000031866/1-916 TYEIAKRSHN WLKLKKDYLE GVGDTLDLVV IGAYLGKGKR AGRYGGFLLA ENSTTRP00000008300/1-923 TYEIAKRSHN WLKLKKDYLD GVGDTLDLVV IGAYLGRGKR AGRYGGFLLA bmy_06442T0/1-905 TYEIAKRSHN WLKLKKDYLD GVGDTLDLVV IGAYLGRGKR AGRYGGFLLA BACU002166/1-952 TYEIAKRSHN WLKLKKDYLD GVGDTLDLVV IGAYLGRGKR AGRYGGFLLA 801 850 ENSP00000263274/1-919 SYDEDSEELQ AICKLGTGFS DEELEEHHQS LKALVLPSPR PYVRIDGAVI ENSBTAP00000031866/1-916 SYDEESEEFQ AICKLGTGFS DEELEEHHQR LQALVLPTPR SYVRADGAVA ENSTTRP00000008300/1-923 AYDEESEELQ AICKLGTGFS DEELEEHHQT LQALVLPAPR SYVRADGAVA bmy_06442T0/1-905 AYDEESEELQ AICKLGTGFS DEELEEHHQS LQALVLPAPR SYVRAEGAVA BACU002166/1-952 AYDEESEELQ AICKLGTGFS DEELEEHHQS LQALVLPAPR SYVRADGAVA 851 900 ENSP00000263274/1-919 PDHWLDPSAV WEVKCADLSL SPIYPAA--- ---------- ---------- ENSBTAP00000031866/1-916 PDHWLDPSDV WEVKCADLSL SPIYPAA--- ---------- ---------- ENSTTRP00000008300/1-923 PDHWLDPSAV WEVKCADLSL SPIYPAA--- ---------- ---------- bmy_06442T0/1-905 PDHWLDPSAV WEVKCADLSL SPIYPAA--- ---------- ---------- BACU002166/1-952 PDHWLDPSAV WEVKCADLSL SPIYPAARGL VGNWGALEQT LRRNPSWEGG 901 950 ENSP00000263274/1-919 ---------- -RGLVDSDKG ISLRFPRFIR VREDKQPEQA TTSAQVACLY ENSBTAP00000031866/1-916 ---------- -RGLVDSEKG ISLRFPRFIR VREDKKPEQA TTSAQVAGLY ENSTTRP00000008300/1-923 ---------- -RGLVDSEKG ISLRFPRFIC VREDKKPEEA TTSAQVACLY bmy_06442T0/1-905 ---------- -RGLVDSEKG ISLRFPRFVC VREDKKPEEA TTSAQVACLY BACU002166/1-952 ETGGGDLGAH VRGLVDSEKG ISLRFPRFVC VREDKKPEEA TTSAQVACLY 951 1000 ENSP00000263274/1-919 RKQSQIQNQQ GEDSGSDPED TY ENSBTAP00000031866/1-916 KKQSQIQNQQ GAEPDSEQEE FY ENSTTRP00000008300/1-923 RKQSQIQNQQ GAEPDSDLED FY bmy_06442T0/1-905 RKQSQIQNQH GAEPDSDLED FY BACU002166/1-952 RKQSQIQNQH -AEPDSDLED FY