KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:39 2014 Check: 00 .. Name: ENSP00000386733/1-1386 Len: 1451 Check: 284 Weight: 1.00 Name: ENSBTAP00000031954/1-1383 Len: 1451 Check: 4422 Weight: 1.00 Name: BACU008311/1-1365 Len: 1451 Check: 555 Weight: 1.00 Name: bmy_16350T0/1-1371 Len: 1451 Check: 1062 Weight: 1.00 Name: ENSTTRP00000003343/1-1345 Len: 1451 Check: 1204 Weight: 1.00 // 1 50 ENSP00000386733/1-1386 MPEGAQGLSL SKPSPSLGCG RRGEVCDCGT VCETRTAPAA PTMASPRGSG ENSBTAP00000031954/1-1383 MPEGARGLGL SKPSPSL--G HRGEVCDCAA VCDTRTAPAT PAMTSPRGSG BACU008311/1-1365 MPEGARGLGL SKPSPSL--G RRGEVCDCAA VCETRTAPAT PAMASPRGSG bmy_16350T0/1-1371 MPEGARGLGL SKPSPSL--G RRGEVCDCAA VCETRTAPAT PAMASPRGSG ENSTTRP00000003343/1-1345 ---------- ---------- ---------- ---------- --MASPRGSG 51 100 ENSP00000386733/1-1386 SSTSLSTVGS EGDPAPGPTP ACSASRPEPL PGPPIRLHLS PVGIPGSARP ENSBTAP00000031954/1-1383 SSTSLSTVGS EGDPAPGPTP ACSASRPEPL PGPPIRLHLS PVGTPGSAKP BACU008311/1-1365 SSTSLSTVGS EGDPAPGPTP ACLASRPEPL PGPPIRLHLS PMGSPASAKP bmy_16350T0/1-1371 SSTSLSTVGS EGDPAPGPTP ACLASRPEPL PGPPIRLHLS PVGTPASAKP ENSTTRP00000003343/1-1345 SSTSLSTVGS EGDPAPGPTP ACLASRPEPL PGPPIRLHLS PVGTPASAKP 101 150 ENSP00000386733/1-1386 SRLERVAREI VETERAYVRD LRSIV--EDY ---------- -LGPLLDGGV ENSBTAP00000031954/1-1383 SRLERVAREI VETERAYVRD LRSIV--EDY ---------- -LGPLLDGGV BACU008311/1-1365 SRLERVAREI VETERAYVRD LRSIVESEDF DIYTLYCMNY PRSAVAPGGR bmy_16350T0/1-1371 SRLERVAREI VETERAYVRD LRSIV--EDY ---------- -LGPLLDGGV ENSTTRP00000003343/1-1345 SRLERVAREI VETERAYVRD LRSIV--EDY ---------- -LGPLLDGGV 151 200 ENSP00000386733/1-1386 LGLSVEQVGT LFANIEDIYE FSSELLEDLE NSSSAG---- -GIAECFVQR ENSBTAP00000031954/1-1383 LGLSAEQVGT LFANIEDIYE FSRELLEDLE GSSSAG---- -GIAECFVQR BACU008311/1-1365 LGEGQGPVHW PPGGASGERT L-DELGKAWG GTRSLETGPV LGAGSCWQ-- bmy_16350T0/1-1371 LGLSAEQVGT LFANIEDIYE FSSELLEDLE GSSSAG---- -GIAECFVQR ENSTTRP00000003343/1-1345 LGLSAEQVGT LFANIEDIYE FSSELLEDLE GSSSAG---- -GIAECFVQR 201 250 ENSP00000386733/1-1386 SEDFDIYTLY CMNYPSSLAL LRELSLSPPA ALWLQERQAQ LRHSLPLQSF ENSBTAP00000031954/1-1383 SEDFDIYTLY CMNYPSSLAL LRELSLSPPA AMWLQERQAQ LHHSLPLQSF BACU008311/1-1365 ------WGLA PADFTPCLCL FVSLRLCPCL YFALSLILVI LSSSVPL--- bmy_16350T0/1-1371 SEDFDIYTLY CMNYPSSLAL LRELSVSPPA ALWLQERQAQ LRHSLPLQSF ENSTTRP00000003343/1-1345 SEDFDIYTLY CMNYPSSLAL LRELSVSPPA ALWLQERQAQ LHHSLPLQSF 251 300 ENSP00000386733/1-1386 LLKPVQRILK YHLLLQELGK HWAEGPGTGG REMVEEAIVS MTAVAWYIND ENSBTAP00000031954/1-1383 LLKPVQRILK YHLLLQELGK HWAEGPDAGG REMVEEAIVS MTAVAWYIND BACU008311/1-1365 ---PLPGCLV --AAVQELGK HWVEGPDAAG REMVEEAIVS MTAVAWYIND bmy_16350T0/1-1371 LLKPVQRILK YHLLLQELGK HWVEGPDAGG REMVEEAIVS MTAVAWYIND ENSTTRP00000003343/1-1345 LLKPVQRILK YHLLLQELGK HWVEGPDAGG RELVEEAIVS MTAVAWYIND 301 350 ENSP00000386733/1-1386 MKRKQEHAAR LQEVQRRLGG WTGPELSAFG ELVLEGAFRG GGGGGPRLRG ENSBTAP00000031954/1-1383 MKRKQEHAAR LQEVQRRLGG WTGPDLSAFG ELVLEGAFRG GGGSGPRLRG BACU008311/1-1365 MKRKQEHAAR LQEVQRRLGG WTGPELSAFG ELVLEGAFRG GGGGGPRLRG bmy_16350T0/1-1371 MKRKQEHAAR LQEVQRRLGG WTGPELSAFG ELVLEGAFRG GGGGGPRLRG ENSTTRP00000003343/1-1345 MKRKQEHAAR LQEVQRRLGG WTGPELSAFG ELVLEGAFRG GGGGGPRLRG 351 400 ENSP00000386733/1-1386 GERLLFLFSR MLLVAKRRGL EYTYKGHIFC CNLSVSESPR DPLGFKVSDL ENSBTAP00000031954/1-1383 GERLLFLFSR MLLVAKRRGP EYTYKGHIFC CNLSVSENPR DPLGFKVSDL BACU008311/1-1365 GERLLFLFSR MLLVAKRRGP EYTYKGHIFC CNLSVSESPR DPLGFKVSDL bmy_16350T0/1-1371 GERLLFLFSR MLLVAKRRGP EYTYKGHIFC CNLSVSESPR DPLGFKVSDL ENSTTRP00000003343/1-1345 GERLLFLFSR MLLVAKRRGP EYTYKGHIFC CNLSVTESPR DPLGFKVSDL 401 450 ENSP00000386733/1-1386 TIPKHRHLLQ AKNQEEKRLW IHCLQRLFFE NHPASIPAKA KQVLLENSLH ENSBTAP00000031954/1-1383 TIPKHRHLLQ ARNQEEKRLW IHCLQRLFFE NHPASIPAKA KQVLLENSLH BACU008311/1-1365 TIPKHRHLLQ AKNQEEKRLW IHCLQRLFFE NHPASIPAKA KQVLLENSLH bmy_16350T0/1-1371 TIPKHRHLLQ AKNQEEKRLW IHCLQRLFFE NHPASIPAKA KQVLLENSLH ENSTTRP00000003343/1-1345 TIPKHRHLLQ AKXXXXXXXX XXXXXXXXXX XXXXXXXXXA KQVLLENSLH 451 500 ENSP00000386733/1-1386 CAPKSKPVLE PLTPPLGSPR PRDARSFTPG RRNTAPSPGP SVIRRGRRQS ENSBTAP00000031954/1-1383 CAPKSKPIPE PLTPPVGSPR PRDARSFTPG RRNTAPSPGP TATRRGRRQS BACU008311/1-1365 CAPKSKSIPE PLTPPLGSPR PRDARSFTPG RRNTAPSPGP ATTRRGRRQS bmy_16350T0/1-1371 CAPKSKSIPE PLTPPLGSPR PRDARSFTPG RRNTAPSPGP ATTRRGRRQS ENSTTRP00000003343/1-1345 CAPKSKSIPE PLTPPLGSPR PRDARSFTPG RRNTAPSPGP ATTRRGRRQS 501 550 ENSP00000386733/1-1386 EPVKDPYVMF PQNAKPGFKH AGSEGELYPP -ESQPPVSGS APPEDLEDAG ENSBTAP00000031954/1-1383 EPLKDLYVMF PHNTKPRLKH TGSAGELYPP LEPQPPGPTS GPPEDLEDTG BACU008311/1-1365 EPLKDPYVMF PQNAKPRLK- ---------- -CPLQ----- ---------- bmy_16350T0/1-1371 EPLKDPYVMF PQN------- ---------- -EPLPPVPAS EPPEDLEDTG ENSTTRP00000003343/1-1345 EPLKDPYVMF PQNAKPRLKH TGSEGELYPP LEPLPPVPAS EPPEDLEDTG 551 600 ENSP00000386733/1-1386 PPTLDPSGTS ITEEILELLN QRGLRDPG-- --PSTHDIPK FPGDSQVPGD ENSBTAP00000031954/1-1383 PPTLDPSGPS ITEEILELLN QRGLRDPG-- --PPPHDVPK FPGDSQVPGD BACU008311/1-1365 ---------- ---------- ---------- --PPPHDIAK FPGDSQVPGD bmy_16350T0/1-1371 PPTLDPSGTS ITEEILELLN QRGLRDPGCP LQPPPHDIPK FPGDSQVPGD ENSTTRP00000003343/1-1345 PPTLDPSGTS ITEEILELLN QRGLRDPG-- --PPPHDIPK FPGDSQVPGD 601 650 ENSP00000386733/1-1386 SETLTFQALP SRDSSEEEEE EEEGLEMDER GPSPLHVLEG LESSIAAEMP ENSBTAP00000031954/1-1383 SDTLTFQGLP SRDSSEEEEE EE--LDMDER EPSPLHVLEG LEGSSAAEIA BACU008311/1-1365 SDTLTFQALP SRDSSEEEEE EE--LDMDER GPSPLHILEG LESSSAAEMP bmy_16350T0/1-1371 SDTLTFQALP SRDSSEEEEE EE--LDMDER GPSPLHVLEG LESSSAAEMP ENSTTRP00000003343/1-1345 SDTLAFQALP SRDSSEEEEE EE--LDTDER GPSPLHVLEG LESSIAAEIP 651 700 ENSP00000386733/1-1386 SIPCLTKIPD VPNLPEIPSR CEIPEGSRLP SLSDISDVFE MPCLPAIPSV ENSBTAP00000031954/1-1383 DIPSLSKSPD RPSLPEMPSL SEIPQMPCLP SLSDISSVFE MPCLPAIPSV BACU008311/1-1365 DIPSLSKNPD VPNLPEIPSL SEIPQMPRLP SLSDVSSVFE MPCLPAIPSV bmy_16350T0/1-1371 DIPSLSKNPD VPNLPEIPSL SEIPQMPRLP SLSDISSVFE MPCLPAIPSV ENSTTRP00000003343/1-1345 DIPSLSKSPD VPNLPEIPSL SEIPQMPRLP SLSDISSVFE MPCLPAIPSV 701 750 ENSP00000386733/1-1386 PNTPSL-SST PTLSCDSWLQ GPLQEPAEAP ATRRELFSGS NPGKLGEPPS ENSBTAP00000031954/1-1383 PDIPSLPSAA PQLPCDSWLQ GPPQELDETL ATRRELFPGS TSGKLGEPSS BACU008311/1-1365 PDIPSL-SNA PTLPCDSWLQ GPLQEPDEAL AARRELFPGS SSGKLGEPSS bmy_16350T0/1-1371 PDIPSL-SNA PTLPCDSWLQ GPLQEPDEAL ATRRELFPGS GSGKLGXPSS ENSTTRP00000003343/1-1345 PDIPSL-SNA PTLPCDSWLQ GPLQEPDEAL ATRRELFPGS SSGKLGEPSS 751 800 ENSP00000386733/1-1386 GGKAGPEEDE EGVSFTDFQP QDVTQHQGFP DELAFRSCSE IRSAWQALEQ ENSBTAP00000031954/1-1383 EDRAGREED- EGGSFPEFQP PDVTQDQGFS HELEFRSCSE IRSAWQALEQ BACU008311/1-1365 ESRAGQEED- EGVSYPDFQP RDVTQDQGFP DELEFRSCSE IRSAWRALEQ bmy_16350T0/1-1371 ESRAGQEED- EGVSYPDFQP RDVTRDQGFP DELEFRSCSE IRSAWRALEQ ENSTTRP00000003343/1-1345 ESRAGQEEG- EGVSYPAFQP RDVTQGQEFP DELEFRPCSE IRSAWRALEQ 801 850 ENSP00000386733/1-1386 GQLARPGFPE PLLILEDSDL --GGDSGSGK AGAPSSERTA SRVRELARLY ENSBTAP00000031954/1-1383 GQLARPGFPE PLLILEDSDL SGGGGSGGGK AGVPTSERSA SRVRELARLY BACU008311/1-1365 GQLARPGFPE PLVILEDSDL --SGGSGSGK AGAPTSERSA SRVRELARLY bmy_16350T0/1-1371 GQLARPGFPE PLVILEDSDL --SGGSGSGK AGAPTSERSA SRVRELARLY ENSTTRP00000003343/1-1345 GQPARPGFPE PLLILEDSDL --SGGSGSGK AGAPTSERSA SRVRELARLY 851 900 ENSP00000386733/1-1386 SERIQQMQRA ETRASANAPR RRPRVLAQPQ PSPCLPQEQA EPGLLPAFGH ENSBTAP00000031954/1-1383 SERIQHMQRA ETRASANAPR RRPRALAQPQ LLPGLSQEQA EPGPLPAFGH BACU008311/1-1365 SERIQQMQRA ETRASANAPR RRPRALAQPQ LLPCLPREQA EPGPLPAFGH bmy_16350T0/1-1371 SERIQQMQRA ETRASANAPR RRPRALAQPQ LLPCLPREQA EPGPLPAFGH ENSTTRP00000003343/1-1345 SERIQQMQRA ETRASANAPR RRPRALAQPQ LLPCLPREQA EPGPLPAFGH 901 950 ENSP00000386733/1-1386 VLVCELAFPL TCAQESVPLG PAVWVQAAIP LSKQGGSPDG QGLHVSNLPK ENSBTAP00000031954/1-1383 VLVCELAFPL TCAQESVPLS PAARVQAATP LTKQGGCQDS QGLHVSSLPE BACU008311/1-1365 VLVCELAFPL TCAQESVPLS PAARVQAATA VTKQGGCLDG QGLNVSSLPE bmy_16350T0/1-1371 VLVCELAFPL TCAQESVPLS PAARVQAATA VTKQGGCLDG QGLNVSSLPE ENSTTRP00000003343/1-1345 VLVCELAFSL TCAQESVPLS PAAQVQAATA VTKQRGCLDG QRLNVSSLPE 951 1000 ENSP00000386733/1-1386 QDLPGIHVSA ATLLPEQGGS RHVQAPAATP LPKQEGPLHL QVPALTTFSD ENSBTAP00000031954/1-1383 QDHLSLQVPA ATPLPEQGSL WNTQIPATTP LLEQEDPPDS QAAAVTISPD BACU008311/1-1365 QDHLGIQVPA ATPLPEQGGL WNIRIPNTTP LPKQEGPLNS QLPAITTLPD bmy_16350T0/1-1371 QDHLGIQVPA ATPLPEQGGL WNIRIPATTP LPKQEGPRNS QLPAITTLPD ENSTTRP00000003343/1-1345 QHHLGIQVPA ATPLPEQGGL WNIRIPATTP LPKQEDPPNG QMPAITTLPD 1001 1050 ENSP00000386733/1-1386 Q-GHPEIQVP ATTPLPEHRS HMVIPAPSTA FCPEQGHCAD IHVPTTPALP ENSBTAP00000031954/1-1383 Q-GHLEIQAP AATPLQEHRD HVDTQVPSST STLEQGGHVD VQLPTNPASA BACU008311/1-1365 QEGHPEIQVP AATPLPEHRG HVDIPVPSTT SFPEQGCHVD IQVPITPALP bmy_16350T0/1-1371 QEGHPEIQVP AATPLPEHRG HVDIPVPSTT SFPEQGCHVD IQVPITPALP ENSTTRP00000003343/1-1345 QEGHPEIQVP AATPLPEHRG HVDIPVPSTT SFPEQGCHVD IQVPITPALP 1051 1100 ENSP00000386733/1-1386 KE-ICSDFTV SVTTPVPKQE GHLDSESPTN IPLTKQGGSR DVQGPDPVCS ENSBTAP00000031954/1-1383 KRGSSSDVMV SATSPAPKQE GCWDSQSPTN TPVTKPGGSR DVQSPATACG BACU008311/1-1365 KQGSCSDVMV LAATPTSKRE GHLDSQSPTN TPLTKQGDSR DVQFPATACG bmy_16350T0/1-1371 KQGSCSDVLV LATTPTSKRE GHLDSQSPTN TPLTKQGDSR DVQFPATACG ENSTTRP00000003343/1-1345 KRGSCSDVMA LAATPTPKRE GHLDSQSSTN TPLTKQGDSR AVQSPATACG 1101 1150 ENSP00000386733/1-1386 QPIQPLSWHG SSLDPQGPGD TLPPLPCHLP DLQIPGTSPL PAHGSHLDHR ENSBTAP00000031954/1-1383 PAVDPLLIHR SSLDPQMPAD TPLPLQRDLP DIQVPGTSPL PVHGGHLDRQ BACU008311/1-1365 QAVDPLLIHR SSLDPQIPAD TPLPLQHDLP DIQVPGTSLL PAHGGHLDHQ bmy_16350T0/1-1371 QAVDPLLIHR SSLDPQIPAD TPLPLQHDLP DIQVPGTSPL PAHGGHLDHQ ENSTTRP00000003343/1-1345 QAVDPLLIHR SSLDPQIPAD TPVPLQHDLP DIQVPGTSPL PAPGGHLDHQ 1151 1200 ENSP00000386733/1-1386 IPANAPLSLS QELPDTQVPA TTPLPLPQVL T--DIWVQAL PTSPKQGSLP ENSBTAP00000031954/1-1383 IPANAPLSLP QDPPDFQVPA AKPLPQTAGL TDADTQVQAL PPLPQQGGLR BACU008311/1-1365 TPANTLPSLP QDLPHFQVPA ATPFPQPQGL T--DTQVQAL PPLPQQGGLP bmy_16350T0/1-1371 TPANTLPSLP QDLPHFQVPA ATPFPQPQGL T--DTQVQAL PPLPQQGGLP ENSTTRP00000003343/1-1345 TPANTLPSLP RDLPHFQVPA AVPSPQPQGL T--DTQVQAL PPLPQQGGLP 1201 1250 ENSP00000386733/1-1386 DIQGPAAAPP LPEPSLTDTQ VQKLT----- ---------- ---------- ENSBTAP00000031954/1-1383 DTQGRAAAPW LQEQSLTDLQ VQKLT----- ---------- ---------- BACU008311/1-1365 DVQGPAAAPP LEEQSLTDLQ VHKLTPLLEQ KSLTNDHVPA AAPLLEEQSL bmy_16350T0/1-1371 DIQGPAAAPL LEEQSLTDLQ VQKLT----- ---------- ---------- ENSTTRP00000003343/1-1345 DIQGPAAAPL LEEQSLTDLQ GQKLT----- ---------- ---------- 1251 1300 ENSP00000386733/1-1386 ---------P SLEQKSLIDA HVPAATPLPE RGGSLDIQGL SPTPVQTTMV ENSBTAP00000031954/1-1383 ---------P LLEQKGLTND QVPAAMPLPK QGGPTDTQDP LPTPVQTTVL BACU008311/1-1365 TDLQVHKLTP LLEQKSLTND HVPAAPPLPE RGGPRDIQGL LPTRVQTTVV bmy_16350T0/1-1371 ---------P LLEQKSLTND HVPAAPPLPE RGGPRDIQGL LPTRVQTTVV ENSTTRP00000003343/1-1345 ---------P LLEQKSLTND HVPAAPPLPE QGGPRDIQGL LPTRVQTTVV 1301 1350 ENSP00000386733/1-1386 LSKPGGSLAS HVARLESSDL TPPHSPPPSS RQLLGPNAAA LSRYLAASYI ENSBTAP00000031954/1-1383 LAKQGGPSVS HAARSESSDL TPPHSPPPPT RKLLGPNAAA LSRYLAASYI BACU008311/1-1365 LSKQGGHVVS HVARSESSDL SPSHSPPLAT RQLLGSNAAA LSRYLAASYI bmy_16350T0/1-1371 LSKQGGHAVS HVARSESSDL SPPHSPPLAT RQLLGSNAAA LSRYLAASYI ENSTTRP00000003343/1-1345 LSKQGGHAVS HVARSESSDL SPPHSPPLTT RQLLGSNAAA LSRYLAASYI 1351 1400 ENSP00000386733/1-1386 SQSLARRQGP GGGAPAASRG SW-SSAPTSR ASSPPPQPQP PPPPARRLSY ENSBTAP00000031954/1-1383 SQSLARRQGP GGEGPPASWG PWSSSAPTSR EPQPPP---- --PPARRLSY BACU008311/1-1365 SQSLARRQGP GGEAPPAARG PWSSSAPTSR APSPPPQPQP PAPPARRLSY bmy_16350T0/1-1371 SQSLARRQGP GGEAPPASRG PWSSSAPTSR APSPPPQPQP PAPPARRLSY ENSTTRP00000003343/1-1345 SQSLARRQGP GGEAPPASRG PWPSSAPTSR APSPPPQPQP PAPPARRLSY 1401 1450 ENSP00000386733/1-1386 ATTVNIHVGG GGRLRPAKAQ VRLNHPALLA STQESMGLHR AQGAPDAPFH ENSBTAP00000031954/1-1383 ATTVNIHVGG GGRLRPAKAQ VRLNHPALLA TPQESVSLRR AQGGPDAPFH BACU008311/1-1365 ATTVNIHVGG GGRLQPAKAQ VRLNRPALLA TPQESVGLRR AQGAPDAPFH bmy_16350T0/1-1371 ATTVNIHVGG GGRLQPAKAQ VRLNHPALLA TPQESVGLRR AQGAPDAPFH ENSTTRP00000003343/1-1345 ATTVNIHVGG GGRLQPAKAQ VRLNHPALLA TPQESVGLRR AQGAPDAPFH 1451 1500 ENSP00000386733/1-1386 M ENSBTAP00000031954/1-1383 M BACU008311/1-1365 M bmy_16350T0/1-1371 M ENSTTRP00000003343/1-1345 M