KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:40 2014 Check: 00 .. Name: bmy_16353T0/1-327 Len: 509 Check: 3083 Weight: 1.00 Name: ENSP00000318115/1-456 Len: 509 Check: 3712 Weight: 1.00 Name: ENSBTAP00000031959/1-355 Len: 509 Check: 4869 Weight: 1.00 Name: BACU008308/1-406 Len: 509 Check: 5154 Weight: 1.00 Name: ENSTTRP00000003352/1-437 Len: 509 Check: 1686 Weight: 1.00 // 1 50 bmy_16353T0/1-327 ---------- ---------- ---------- ---------- ---------- ENSP00000318115/1-456 MASALSLGNK CDPFLRCVLC RGGGALQGPR GRGPDDFESQ LSPPGSARRL ENSBTAP00000031959/1-355 ---------- ---------- ---------- ---------- ---------- BACU008308/1-406 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003352/1-437 RASASPRSSG C----RRTWG VGGGTPSGAR GRGAS----- ---------V 51 100 bmy_16353T0/1-327 ---------- ---------- ---------- ---------- ---------- ENSP00000318115/1-456 VRSKRACGNP PDAFGLSRAS VHPPLPRVSI GCSSGPGRAK RERVGGAAWR ENSBTAP00000031959/1-355 ---------- ---------- ---------- ---------- ---------- BACU008308/1-406 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003352/1-437 SQLVGARGSA PAALCLSRAP VHPPLSCTSI GRGPGPGRRE G---GGVAWR 101 150 bmy_16353T0/1-327 ---MAASAAP FLRLRSGLRQ GTRGLCARLA TPPPRAPD-- ---------- ENSP00000318115/1-456 QRKMAASAAV FSRLRSGLRL GSRGLCTRLA TPPRRAPDQA AEIGSRGSTK ENSBTAP00000031959/1-355 ---MAASAAV FLRLRSGLRQ GARGLCARLA TPPPRAPDQA AEIGSRAGTK BACU008308/1-406 ---MAASAAP FLRLRSGLRQ GAWGLCARFA TPPPRAPDQA TEIGSRAGIK ENSTTRP00000003352/1-437 QRKMAASAAP FLRLRSGLRQ GARGLCARLA TPPPRAPDQA TEIGSRAGAK 151 200 bmy_16353T0/1-327 ---QGPL--- ----PTLARA LEIPFLGVMG ------FCLC HPKPSIFLST ENSP00000318115/1-456 A--QGPQQQP GSEGPSYAKK VALWLAGLLG AGGTVSVVYI FGNNPVDENG ENSBTAP00000031959/1-355 AQTQGPQQQR SSEGPSYAKK VALWLAGLLG AGGTVSVIYI FGNNAVDENG BACU008308/1-406 AQAQGPQQQR NSEGPSYAKK VALWLAGLLG AGGTASVIYI FGNNSVDENG ENSTTRP00000003352/1-437 AQTQGPQQQR NSEGPSYAKK VALWLAGLLG AGGTVSVIYI FGNNSVDENG 201 250 bmy_16353T0/1-327 SQIPDEFDND PILVQQLRRT YKYFKDYRQM IIEPTSPCLL PDPLREPYYQ ENSP00000318115/1-456 AKIPDEFDND PILVQQLRRT YKYFKDYRQM IIEPTSPCLL PDPLQEPYYQ ENSBTAP00000031959/1-355 AKIPDEFDND PILVQQLRRT YKYFKDYRQM IIEPTSPCLL PDPLREPYYQ BACU008308/1-406 AKIPDEFDND PILVQQLRRT YKYFKDYRQM IIEPTSPCLL PDPLREPYYQ ENSTTRP00000003352/1-437 AKIPDEFDND PILVQQLRRT YKYFKDYRQM IIEPTSPCLL PDPLREPYYQ 251 300 bmy_16353T0/1-327 PPYTLVLELT GVLLHPEWSL ATGWRFKKRP GIETLFQQLA PLYEIVIFTS ENSP00000318115/1-456 PPYTLVLELT GVLLHPEWSL ATGWRFKKRP GIETLFQQLA PLYEIVIFTS ENSBTAP00000031959/1-355 PPYTLVLELT GVLLHPEWSL ATGWRFKKRP GIETLFQQLA PLYEIVIFTS BACU008308/1-406 PPYTLVLELT GVLLHPEWSL ATGWRFKKRP GIETLFQQLA PLYEIVIFTS ENSTTRP00000003352/1-437 PPYTLVLELT GVLLHPEWSL ATGWRFKKRP GIETLFQQLA PLYEIVIFTS 301 350 bmy_16353T0/1-327 ETGMTAFPLI DSVDPHGFIS YRLFRDATRY MDGHHVK--- ---------- ENSP00000318115/1-456 ETGMTAFPLI DSVDPHGFIS YRLFRDATRY MDGHHVK--- ---------- ENSBTAP00000031959/1-355 ETGMTAFPLI DSVDPHGFIS YRLFRDATRY MDGHHVK--- ---------- BACU008308/1-406 ETGMTAFPLI DSVDPHGFIS YRLFRDATRY MDGHHVKVPC GGAMVGRWDL ENSTTRP00000003352/1-437 ETGMTAFPLI DSVDPHGFIS YRLFRDATRY MDGHHVK--- ---------- 351 400 bmy_16353T0/1-327 ---------- ---------- ---------- --------DI SCLNRDPARV ENSP00000318115/1-456 ---------- ---------- ---------- --------DI SCLNRDPARV ENSBTAP00000031959/1-355 ---------- ---------- ---------- --------DI SCLNRDPARV BACU008308/1-406 GEGWYFPKER GPSSDTSLNL FLVEKQPAAS GSAPGLILDI SCLNRDPARV ENSTTRP00000003352/1-437 ---------- ---------- ---------- --------DI SCLNRDPARV 401 450 bmy_16353T0/1-327 VVVDCKKEAF RLQPYNGVAL RPWNGNSDDR VLLDLSAFLK TIALNGVEDV ENSP00000318115/1-456 VVVDCKKEAF RLQPYNGVAL RPWDGNSDDR VLLDLSAFLK TIALNGVEDV ENSBTAP00000031959/1-355 VVVDCKKEAF RLQPYNGVAL RPWDGNSDDR VLLDLSAFLK TIALNGVEDV BACU008308/1-406 VVVDCKKEAF RLQPYNGVAL RPWNGNSDDR VLLDLSAFLK TIALNGVEDV ENSTTRP00000003352/1-437 VVVDCKKEAF RLQPYNGVAL RPWNGNSDDR VLLDLSAFLK TIALNGVEDV 451 500 bmy_16353T0/1-327 RTVLEHYALE EDPLEAFKQR QSRLEQEEQQ RLAELSKSSK QNLFFGSLTS ENSP00000318115/1-456 RTVLEHYALE DDPLAAFKQR QSRLEQEEQQ RLAELSKSNK QNLFLGSLTS ENSBTAP00000031959/1-355 RTVLEHYALE EDPLEAFKQR QSRLEQEEQQ RLAELSKSSK QNLFFSSLTS BACU008308/1-406 RTVLEHYALE EDPLEAFKQR QSRLEQEEQQ RLAELSKSSK QNLFFGSLTS ENSTTRP00000003352/1-437 RTVLEHYALE EDPLEAFKQR QSRLEQEEQQ RLAELSKSSK QNLFFGSLTS 501 550 bmy_16353T0/1-327 RLWPRSKQP ENSP00000318115/1-456 RLWPRSKQP ENSBTAP00000031959/1-355 RLWPRSKQP BACU008308/1-406 RLWPRSKQP ENSTTRP00000003352/1-437 RLWPRSKQP