KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:41 2014 Check: 00 .. Name: ENSTTRP00000014082/1-764 Len: 773 Check: 793 Weight: 1.00 Name: bmy_16129T0/1-547 Len: 773 Check: 3808 Weight: 1.00 Name: BACU017823/1-771 Len: 773 Check: 8486 Weight: 1.00 Name: ENSP00000231706/1-771 Len: 773 Check: 7772 Weight: 1.00 Name: ENSBTAP00000031960/1-771 Len: 773 Check: 1568 Weight: 1.00 // 1 50 ENSTTRP00000014082/1-764 MSGFLASLDP RRVQWGAAWY AMHSXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16129T0/1-547 ------MVNH QKFSSSPEIY H--------- ---------- ---------- BACU017823/1-771 MSGFLASLDP RRVQWGAAWY AMHSRILRTK PVESMLEGTG ATTAHGTKLA ENSP00000231706/1-771 MSGFFTSLDP RRVQWGAAWY AMHSRILRTK PVESMLEGTG TTTAHGTKLA ENSBTAP00000031960/1-771 MSGFLTSLDP RRVQWGAAWY AMHSRILRTK PVESMLEGTG ATTAHGTKLA 51 100 ENSTTRP00000014082/1-764 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16129T0/1-547 ---------- ----PC---- ---------- ---------- ---------- BACU017823/1-771 QVLTTVDLIS LGVGSCVGTG MYVVSGLVAK EMAGPGVIVS FIIAAVASIL ENSP00000231706/1-771 QVLTTVDLIS LGVGSCVGTG MYVVSGLVAK EMAGPGVIVS FIIAAVASIL ENSBTAP00000031960/1-771 QVLTTMDLIS LGVGSCVGTG MYVVSGLVAK EMAGPGVIVS FIIAAVASIL 101 150 ENSTTRP00000014082/1-764 XXVCYAEFGV RVPKTTGSAY TYSYVTVGEF VAFFIGWNLI LEYLIGTAAG bmy_16129T0/1-547 --VCYAEFGV RVPKTTGSAY TYSYVTVGEF VAFFIGWNLI LEYLIGTAAG BACU017823/1-771 SGVCYAEFGV RVPKTTGSAY TYSYVTVGEF VAFFIGWNLI LEYLIGTAAG ENSP00000231706/1-771 SGVCYAEFGV RVPKTTGSAY TYSYVTVGEF VAFFIGWNLI LEYLIGTAAG ENSBTAP00000031960/1-771 SGVCYAEFGV RVPKTTGSAY TYSYVTVGEF VAFFIGWNLI LEYLIGTAAG 151 200 ENSTTRP00000014082/1-764 ASALSSMFDS LANHTVSRRM ADSVGTLNGL GKGKQSYR-- --LLAVIAVI bmy_16129T0/1-547 ASALSSMFDS LANHTVSRRM ADSVGTLNGL GKGKQSYPDL LALVIAVIVT BACU017823/1-771 ASALSSMFDS LANHTVSRRM AESVGTLNGL GKGKQSYPDL LALVIAVIVT ENSP00000231706/1-771 ASALSSMFDS LANHTISRWM ADSVGTLNGL GKGEESYPDL LALLIAVIVT ENSBTAP00000031960/1-771 ASALSSMFDS LANHTISRWM VDSVGTLNGL GKGEQSYPDL LALVIAIIVT 201 250 ENSTTRP00000014082/1-764 VIVALG--RS VGFNNVLNVL NLAVWVFIMI AGCFFINGKY WSEGQFLPHG bmy_16129T0/1-547 IIVALGVKNS VGFNNVLNVL NLAVWVFIMI AGFFFINGKY WAEGQFLPHG BACU017823/1-771 IIVALGVKNS VGFNNVLNVL NLAVWVFIMI AGCFFINGKY WAEGQFLPHG ENSP00000231706/1-771 IIVALGVKNS IGFNNVLNVL NLAVWVFIMI AGLFFINGKY WAEGQFLPHG ENSBTAP00000031960/1-771 IIVALGVKNS VGFNNVLNVL NLAVWVFIMI AGFFFINGKY WAEGQFLPYG 251 300 ENSTTRP00000014082/1-764 WSGVLQGAAT CFYAFIGFDI IATTGEEAKN PNTSIPYAIT ASLVICLTAY bmy_16129T0/1-547 WSGVLQGAAT CFYAFIGFDI IATTGEEAKN PNTSIPYAIT ASLVICLTAY BACU017823/1-771 WSGVLQGAAT CFYAFIGFDI IATTGEEAKN PNTSIPYAIT ASLVICLTAY ENSP00000231706/1-771 WSGVLQGAAT CFYAFIGFDI IATTGEEAKN PNTSIPYAIT ASLVICLTAY ENSBTAP00000031960/1-771 WSGVLQGAAT CFYAFIGFDI IATTGEEAKN PNTSIPYAIT ASLVICLTAY 301 350 ENSTTRP00000014082/1-764 VSVSMILTLM VPYYAIDTES PLMEMFVARG FYAAKFIVAI GSVAGLTVSL bmy_16129T0/1-547 VSE------- ---------- PNPGVGIAAV FKAVN----- ---PELTVN- BACU017823/1-771 VSVSMILTLM VPYYAIDTES PLMEMFVARG FYAAKFIVAI GSVAGLTVSL ENSP00000231706/1-771 VSVSVILTLM VPYYTIDTES PLMEMFVAHG FYAAKFVVAI GSVAGLTVSL ENSBTAP00000031960/1-771 VSVSMILTLM VPYDTIDTES PLMEMFVARG FYAAKFVVAI GSVAGLTVSL 351 400 ENSTTRP00000014082/1-764 LGSLFPMPRI IYAMAGDGLL FRFLAHVSSY TETPVVACIV SGFLAALLSL bmy_16129T0/1-547 --PLLAPP-- ---------- FRFLAHVSSY TETPVVACIV SGFLAALLSL BACU017823/1-771 LGSLFPMPRV IYAMAGDGLL FRFLAHVSSY TETPVVACIV SGFLAALLSL ENSP00000231706/1-771 LGSLFPMPRV IYAMAGDGLL FRFLAHVSSY TETPVVACIV SGFLAALLAL ENSBTAP00000031960/1-771 LGSLFPMPRV IYAMAGDGLL FRFLAHVSSY TETPVVACIV SGFLAALLSL 401 450 ENSTTRP00000014082/1-764 LVSLRDLIEM MSIGTLLAYT LVSVCVLLLR YQPESDIDGF VKFLSQEHT- bmy_16129T0/1-547 LVSLRDLIEM MSIGTLLAYT LVSVCVLLLR YQPESDIDGF VKFLSQEHTK BACU017823/1-771 LVSLRDLIEM MSIGTLLAYT LVSVCVLLLR YQPESDIDGF VKFLSQEHTK ENSP00000231706/1-771 LVSLRDLIEM MSIGTLLAYT LVSVCVLLLR YQPESDIDGF VKFLSEEHTK ENSBTAP00000031960/1-771 LVSLRDLIEM MSIGTLLAYT LVSVCVLLLR YQPESDIDGF VKFLSEEHTK 451 500 ENSTTRP00000014082/1-764 KKEGILADCE KEVGSPVSEG EEFSGPATNT CGAKNLPSLG DNEMLIGKSD bmy_16129T0/1-547 KKEGILAECE KEVCSPVSEG EEFSGPATNT CGAKNLPSLG DNEMLIGKSD BACU017823/1-771 KKEGILAECE KEVCSPVSEG EEFSGPATNT CGAKNLPSLG DNEMLIGKSD ENSP00000231706/1-771 KKEGILADCE KEACSPVSEG DEFSGPATNT CGAKNLPSLG DNEMLIGKSD ENSBTAP00000031960/1-771 KKEGILADCE KEVCSPVSEG EEFSGPATNT CGAKNLPSLG DNEMLIGKSD 501 550 ENSTTRP00000014082/1-764 KSTYNVNHPN YGTVDMTTGI EADETENIYL IKLKKLIGPR YYTMRIRLGL bmy_16129T0/1-547 KSTYNVNHPN YGTVDXTTGI EADETENIYL IKLKKLIGPR YYTMRIRLGL BACU017823/1-771 KSTYNVNHPN YGTVDVTTGI EADETENIYL IKLKKLIGPR YYTMRIRLGL ENSP00000231706/1-771 KSTYNVNHPN YGTVDMTTGI EADESENIYL IKLKKLIGPH YYTMRIRLGL ENSBTAP00000031960/1-771 KSTYNVNHPN YGTVDMTTGI EADESENIYL IKLKKLIGPR YYTMRIQLGL 551 600 ENSTTRP00000014082/1-764 PGKMDRPTAA TGHTVTICVL LLFILMFIFC SFIIFGSDYI SKQSWWAILL bmy_16129T0/1-547 PGKMDRPTAA TGHTATICVL LLFVLMFIFC SFIIFGSDYI SEQSWWAVLL BACU017823/1-771 PGKMDRPTAA TGHTATICVL LLFVLMFIFC SFIIFGSDYI SEQSWWAVLL ENSP00000231706/1-771 PGKMDRPTAA TGHTVTICVL LLFILMFIFC SFIIFGSDYI SEQSWWAILL ENSBTAP00000031960/1-771 PGKMDRPTAA TGHTVTICVL LLFILMFVFC SFIIFGSDYI SEQSWWAILL 601 650 ENSTTRP00000014082/1-764 VILMVLLISI LVFVILQQPE NPKKLPYMAP CLPFVPAFAM LVNIYLMLKL bmy_16129T0/1-547 VILMVLLISI LVFVILQQPE NPKKLPYMAP CLPFVPAFAM LVNIYLMLKL BACU017823/1-771 VILMVLLISI LVFVILQQPE NPKKLPYMAP CLPFVPAFAM LVNIYLMLKL ENSP00000231706/1-771 VVLMVLLIST LVFVILQQPE NPKKLPYMAP CLPFVPAFAM LVNIYLMLKL ENSBTAP00000031960/1-771 VVLMVLLISA LVFVILQQPE NPKKLPYMAP CLPFVPAFAM LVNIYLMLKL 651 700 ENSTTRP00000014082/1-764 STITWIRFAV WCFVGMLIYF GYGIXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16129T0/1-547 STITWIRFAV WCFVG----- ---------- ---------- ---------- BACU017823/1-771 STITWIRFAV WCFVGMLIYF GYGI--WNST LEISAREEAL HQSTYQRYDV ENSP00000231706/1-771 STITWIRFAV WCFVGLLIYF GYGI--WNST LEISAREEAL HQSTYQRYDV ENSBTAP00000031960/1-771 STITWIRFAV WCFVGMLIYF GYGI--WNST LEISAREEAL HQSTYQRYDV 701 750 ENSTTRP00000014082/1-764 XXXXXXXXXX XXXXEGESQE NWGGSAEDKG F-YQQMSDAQ ANTQTSSKAK bmy_16129T0/1-547 ---------- ---------- ---------- ---------- ---------- BACU017823/1-771 DDPFSVEEGF SYATEGESQE NWGGPAEDKG FYYQQMSDAQ ANTQMSSKAK ENSP00000231706/1-771 DDPFSVEEGF SYATEGESQE DWGGPTEDKG FYYQQMSDAK ANGRTSSKAK ENSBTAP00000031960/1-771 DDPFSVEEGF SYATEGESQE NWGGPAEDKG FYYQQMSDTQ PNTRTSSKAK 751 800 ENSTTRP00000014082/1-764 SKSKHKQNSE A-IANDELDY SPE bmy_16129T0/1-547 ---------- -----KQLPL KP- BACU017823/1-771 SKSKHKQNSE ALIANDELDY SPE ENSP00000231706/1-771 SKSKHKQNSE ALIANDELDY SPE ENSBTAP00000031960/1-771 SKSKHKQNSE ALIANDELDY SPE