KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:41 2014 Check: 00 .. Name: BACU008333/1-783 Len: 952 Check: 5033 Weight: 1.00 Name: bmy_16327T0/1-471 Len: 952 Check: 1301 Weight: 1.00 Name: ENSP00000221419/1-589 Len: 952 Check: 5689 Weight: 1.00 Name: ENSBTAP00000031993/1-588 Len: 952 Check: 4133 Weight: 1.00 Name: ENSTTRP00000011176/1-579 Len: 952 Check: 573 Weight: 1.00 // 1 50 BACU008333/1-783 MRRRTSPARA LWAVV----- ---------- ---------- --GGGH---- bmy_16327T0/1-471 LPPPKLPSVC SLF------- ---------- ---------- --DLGR---- ENSP00000221419/1-589 MSRRLLPRAE KRRRRLEQRQ QPDEQRRRSG AMVKMAAAGG GGGGGRYYGG ENSBTAP00000031993/1-588 MSRRLLPRAE KRRRRLEQRQ QPDEQRRRSG AMVKMAAAGG GGGGGRYYGG ENSTTRP00000011176/1-579 MSRRLLPRAX XXXXXXXXXX XXXXXXRRSG A-VKMAPSGG GDDVGSYYGG 51 100 BACU008333/1-783 ---------R VSGEW----- ---------- ---------E NYDDPHKTPA bmy_16327T0/1-471 -------PAR LAAEL----- ---------- ---------E NYDDPHKTPA ENSP00000221419/1-589 GSEGGRAPKR LKTDNAGDQH GGGGGGGGGA GAAGGGGGGE NYDDPHKTPA ENSBTAP00000031993/1-588 GSEGGRAPKR LKTDNAGDQH GGGGGGGGGA GAA-GGGGGE NYDDPHKTPA ENSTTRP00000011176/1-579 GSEGGRAPKR LKTDNAGDQH -GGGGGGGGA GAA-GGGGGE NYDDPHKTPA 101 150 BACU008333/1-783 SPVVHIRGLI DGVVEADLVE ALQEFGPISY VVVMPKKRQA LVEFEDVLGA bmy_16327T0/1-471 SPVVHIRGLI DGVVEADLVE ALQEFGPISY VVVMPKKRQA LVEFEDVLGA ENSP00000221419/1-589 SPVVHIRGLI DGVVEADLVE ALQEFGPISY VVVMPKKRQA LVEFEDVLGA ENSBTAP00000031993/1-588 SPVVHIRGLI DGVVEADLVE ALQEFGPISY VVVMPKKRQA LVEFEDVLGA ENSTTRP00000011176/1-579 SPVVHIRGLI DGVVEADLVE ALQEFGPISY VVVMPKKRQA LVEFEDVLGA 151 200 BACU008333/1-783 CNAVNYAADN QIYIAGHPAF VNYSTSQKIS RPGDSDDSRS VNSVLLFTIL bmy_16327T0/1-471 CNAVNYAADN QIYIAGHPAF VNYSTSQKIS RPGDSDDSRS VNSVLLFTIL ENSP00000221419/1-589 CNAVNYAADN QIYIAGHPAF VNYSTSQKIS RPGDSDDSRS VNSVLLFTIL ENSBTAP00000031993/1-588 CNAVNYAADN QIYIAGHPAF VNYSTSQKIS RPGDSDDSRS VNSVLLFTIL ENSTTRP00000011176/1-579 CNAVNYAADN QIYIAGHPAF VNYSTSQKIS RPGDSDDSRS VNSVLLFTIL 201 250 BACU008333/1-783 NPIYSITT-- ---------- ---------- ---------- ---------- bmy_16327T0/1-471 NPIYSITTDV LYTICNPCGP VQRIVIFRKN GVQAMVEYPL LGNGCSLRWE ENSP00000221419/1-589 NPIYSITTDV LYTICNPCGP VQRIVIFRKN GVQAMVE--- ---------- ENSBTAP00000031993/1-588 NPIYSITTDV LYTICNPCGP VQRIVIFRKN GVQAMVE--- ---------- ENSTTRP00000011176/1-579 NPIYSITTDV LYTICNPCGP VQRIVIFRKN GVQAMVE--- ---------- 251 300 BACU008333/1-783 ---------- ---------- ------SAQR AKASLNGADI YSGCCTLKIE bmy_16327T0/1-471 LTGLALFREL LGXDFPLTVL TFDSVQSAQR AKASLNGADI YSGCCTLKIE ENSP00000221419/1-589 ---------- ---------- -FDSVQSAQR AKASLNGADI YSGCCTLKIE ENSBTAP00000031993/1-588 ---------- ---------- -FDSVQSAQR AKASLNGADI YSGCCTLKIE ENSTTRP00000011176/1-579 ---------- ---------- -FDSVQSAQR AKASLNGADI YSGCCTLKIE 301 350 BACU008333/1-783 YAKPTRLNVF KNDQDTWDYT NPNLSGQGDP GSNPNKRQRQ PPLLGDHPAE bmy_16327T0/1-471 YAKPTRLNVF KNDQDTWDYT NPNLSGQGDP GSNPNKRQRQ PPLLGDHPAE ENSP00000221419/1-589 YAKPTRLNVF KNDQDTWDYT NPNLSGQGDP GSNPNKRQRQ PPLLGDHPAE ENSBTAP00000031993/1-588 YAKPTRLNVF KNDQDTWDYT NPNLSGQGDP GSNPNKRQRQ PPLLGDHPAE ENSTTRP00000011176/1-579 YAKPTRLNVF KNDQDTWDYT NPNLSGQGDP GSNPNKRQRQ PPLLGDHPAE 351 400 BACU008333/1-783 YG-------- ---------- ---------- ---------G PHGGYHSHYH bmy_16327T0/1-471 YGEGRGFPSV DSRGSCAPAR RPTRKFSPVL PLFPSHPPGG PHGGYHSHYH ENSP00000221419/1-589 YG-------- ---------- ---------- ---------G PHGGYHSHYH ENSBTAP00000031993/1-588 YG-------- ---------- ---------- ---------G PHGGYHSHYH ENSTTRP00000011176/1-579 YG-------- ---------- ---------- ---------G PHGGYHSHYH 401 450 BACU008333/1-783 DEGYGPPPPH YEGRRMGPPV GGHRRGPSPY GPPYGPPPPP PPPPEYGPHA bmy_16327T0/1-471 DEGYGPPPPH YEGRRMGPPV GGHRRGPSRY GPQYGHPPPP PPPPEYGPHA ENSP00000221419/1-589 DEGYGPPPPH YEGRRMGPPV GGHRRGPSRY GPQYGHPPPP PPPPEYGPHA ENSBTAP00000031993/1-588 DEGYGPPPPH YEGRRMGPPV GGHRRGPSRY GPQYGHPPPP PPPPEYGPHA ENSTTRP00000011176/1-579 DEGYGPPPPH YEGRRMGPPV GGHRRGPSRY GPQYGHPPPP PPPPEYGPHA 451 500 BACU008333/1-783 DSPVLMVYGL DQSKMNCDRV FNVFCLYGNV EKVKFMKSKP GAAMVEMADG bmy_16327T0/1-471 DSPVLMVYGL DQSKMNCDRV FNVFCLYGNV EKVKFMKSKP GAAMVEMADG ENSP00000221419/1-589 DSPVLMVYGL DQSKMNCDRV FNVFCLYGNV EKVKFMKSKP GAAMVEMADG ENSBTAP00000031993/1-588 DSPVLMVYGL DQSKMNCDRV FNVFCLYGNV EKVKFMKSKP GAAMVEMADG ENSTTRP00000011176/1-579 DSPVLMVYGL DQSKMNCDRV FNVFCLYGNV E-VKFMSM-P GR--VEMAD- 501 550 BACU008333/1-783 YAVDRAITHL NNNFMFGQKL NVCVSKQPAI MPGQSYGLED GSCSYKDFSE bmy_16327T0/1-471 YAVDRAITHL NNNFMFGQKL NVCVSKQPAI MPGQS----- ---------- ENSP00000221419/1-589 YAVDRAITHL NNNFMFGQKL NVCVSKQPAI MPGQSYGLED GSCSYKDFSE ENSBTAP00000031993/1-588 YAVDRAITHL NNNFMFGQKL NVCVSKQPAI MPGQSYGLED GSCSYKDFSE ENSTTRP00000011176/1-579 YAV-RAITHL -TNFMFGQKL NVCVSKQPAI MPGQSYGLED GSCSYKDFSE 551 600 BACU008333/1-783 SRNNRFSTPE QAAKNRIQHP SNVLHFFNAP LEVTEENFFE ICDELGVKRP bmy_16327T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSP00000221419/1-589 SRNNRFSTPE QAAKNRIQHP SNVLHFFNAP LEVTEENFFE ICDELGVKRP ENSBTAP00000031993/1-588 SRNNRFSTPE QAAKNRIQHP SNVLHFFNAP LEVTEENFFE ICDELGVKRP ENSTTRP00000011176/1-579 SRNNRFSTPE QAAKNRIQHP SNVLHFFNAP LEVTEENFFE ICDELGVKRP 601 650 BACU008333/1-783 SSVKVFSGKS ERSSSGLLEW ESKSDALETL GFLNHYQMKN PRLTARTNLG bmy_16327T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSP00000221419/1-589 SSVKVFSGKS ERSSSGLLEW ESKSDALETL GFLNHYQMKN P--------- ENSBTAP00000031993/1-588 SSVKVFSGKS ERSSSGLLEW ESKSDALETL GFLNHYQMKN P--------- ENSTTRP00000011176/1-579 SSVKVFSGKS ERSSSGLLEW ESKSDALETL GFLNHYQMKN P--------- 651 700 BACU008333/1-783 LSLNLHPMSS FAQDEASKAA PEEAPGHSYE SLRVTSAQKH ILHVQLNRPE bmy_16327T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSP00000221419/1-589 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031993/1-588 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011176/1-579 ---------- ---------- ---------- ---------- ---------- 701 750 BACU008333/1-783 KRNAMNKAFW SEMVVCFNKI AEDSDCRAVV ISGAGKMFTS GIDFVDMASG bmy_16327T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSP00000221419/1-589 -----NGPYP YTLKLCFSTA QHAS------ ---------- ---------- ENSBTAP00000031993/1-588 -----NGPYP YTLKLCFSTA QHAS------ ---------- ---------- ENSTTRP00000011176/1-579 -----NGPYP YTLKLCFSTA QHAS------ ---------- ---------- 751 800 BACU008333/1-783 LLQPAGDDVA RISWHLHSLL SRYQETFSVI EKCPKPVIGA IHGGCIGAGV bmy_16327T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSP00000221419/1-589 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031993/1-588 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011176/1-579 ---------- ---------- ---------- ---------- ---------- 801 850 BACU008333/1-783 DLITACDIRY CTQDASFQVK EVDLGLAADV GTLQRLPRVI GNQSLVNELA bmy_16327T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSP00000221419/1-589 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031993/1-588 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011176/1-579 ---------- ---------- ---------- ---------- ---------- 851 900 BACU008333/1-783 FTARKMMADE ALESGLVSRV FPDKEVMLDA AFALAAEISS KSPVAVQSTK bmy_16327T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSP00000221419/1-589 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031993/1-588 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011176/1-579 ---------- ---------- ---------- ---------- ---------- 901 950 BACU008333/1-783 INLLYSRDHS VTDSLNFMKS WNMSMLQTED VVKSLQALME KKELKTITFS bmy_16327T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSP00000221419/1-589 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000031993/1-588 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011176/1-579 ---------- ---------- ---------- ---------- ---------- 951 1000 BACU008333/1-783 KL bmy_16327T0/1-471 -- ENSP00000221419/1-589 -- ENSBTAP00000031993/1-588 -- ENSTTRP00000011176/1-579 --